Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_39255 Sequoiadendron giganteum HOM05D003774 ORTHO05D009174 7.0e-124 447.2 211 100.0
ATR0320G028 Amborella trichopoda HOM05D003774 ORTHO05D009174 3.3e-65 252.3 172 66.3
TAR624G0812 Trochodendron aralioides HOM05D003774 ORTHO05D009174 1.6e-64 250.0 176 64.8
MBI09_g10676_MAGBIO Magnolia biondii HOM05D003774 ORTHO05D009174 8.1e-64 247.7 172 62.8
PGR042G3286 Punica granatum HOM05D003774 ORTHO05D009174 6.4e-61 238.0 174 60.3
Rhsim11G0052900 Rhododendron simsii HOM05D003774 ORTHO05D009174 6.4e-61 238.0 173 60.7
Manes.02G198600 Manihot esculenta HOM05D003774 ORTHO05D009174 1.9e-60 236.5 173 60.7
CANSAT25G3020 Cannabis sativa HOM05D003774 ORTHO05D009174 4.6e-59 231.9 177 59.3
Prupe.1G555600 Prunus persica HOM05D003774 ORTHO05D009174 1.0e-58 230.7 175 58.9
Potri.019G079000 Populus trichocarpa HOM05D003774 ORTHO05D009174 1.8e-58 229.9 173 60.1
Thecc.08G192500 Theobroma cacao HOM05D003774 ORTHO05D009174 3.9e-58 228.8 175 58.9
Atru.chr13.2367 Acer truncatum HOM05D003774 ORTHO05D009174 6.7e-58 228.0 175 58.3
AT1G35420 Arabidopsis thaliana HOM05D003774 ORTHO05D009174 6.7e-58 228.0 173 57.8
Sabra13G0091200 Salix brachista HOM05D003774 ORTHO05D009174 6.7e-58 228.0 173 59.0
PSO017G5271 Papaver somniferum HOM05D003774 ORTHO05D009174 8.7e-58 227.6 173 57.8
PSO170G6059 Papaver somniferum HOM05D003774 ORTHO05D009174 8.7e-58 227.6 173 57.8
DCAR_003529 Daucus carota HOM05D003774 ORTHO05D009174 1.5e-57 226.9 173 59.0
FAN18G3876 Fragaria x ananassa HOM05D003402 ORTHO05D003939 1.5e-57 226.9 173 59.0
Ciclev10001943m.g Citrus clementina HOM05D003774 ORTHO05D009174 3.3e-57 225.7 175 58.3
RcHm_v2.0_Chr7g0227151 Rosa chinensis HOM05D003774 ORTHO05D009174 3.3e-57 225.7 173 59.5
FvH4_5g31620 Fragaria vesca HOM05D003774 ORTHO05D009174 4.3e-57 225.3 173 59.0
FAN22G1282 Fragaria x ananassa HOM05D003774 ORTHO05D009174 4.3e-57 225.3 173 59.0
Nn1g08406 Nelumbo nucifera HOM05D003774 ORTHO05D009174 1.3e-56 223.8 177 55.9
QL02p014374 Quercus lobata HOM05D003774 ORTHO05D009174 1.3e-56 223.8 175 58.3
CiPaw.07G235700 Carya illinoinensis HOM05D003774 ORTHO05D009174 2.1e-56 223.0 177 58.2
TWI59G1355 Tripterygium wilfordii HOM05D003774 ORTHO05D009174 3.7e-56 222.2 176 56.8
AL1G50230 Arabidopsis lyrata HOM05D003774 ORTHO05D009174 4.8e-56 221.9 173 56.1
Carub.0001s3302 Capsella rubella HOM05D003774 ORTHO05D009174 8.1e-56 221.1 173 56.1
Sp1g30140 Schrenkiella parvula HOM05D003774 ORTHO05D009174 8.1e-56 221.1 173 55.5
CARHR034180 Cardamine hirsuta HOM05D003774 ORTHO05D009174 1.1e-55 220.7 173 56.1
Cfa012969 Carpinus fangiana HOM05D003774 ORTHO05D009174 1.1e-55 220.7 173 57.2
GSVIVG01026084001 Vitis vinifera HOM05D003774 ORTHO05D009174 1.1e-55 220.7 175 56.0
COL.COLO4_24651 Corchorus olitorius HOM05D003774 ORTHO05D009174 1.4e-55 220.3 173 58.4
Haze_21313 Corylus avellana HOM05D003774 ORTHO05D009174 1.4e-55 220.3 172 58.1
Actinidia29410 Actinidia chinensis HOM05D003774 ORTHO05D009174 3.1e-55 219.2 174 59.2
BcaB07g33408 Brassica carinata HOM05D003774 ORTHO05D009174 5.3e-55 218.4 173 53.8
Eucgr.F02990 Eucalyptus grandis HOM05D003774 ORTHO05D009174 5.3e-55 218.4 173 56.1
MD08G1217800 Malus domestica HOM05D003774 ORTHO05D009174 6.9e-55 218.0 178 55.6
CDE08G0174 Ceratophyllum demersum HOM05D003774 ORTHO05D009174 9.0e-55 217.6 174 55.2
Gohir.A13G119000 Gossypium hirsutum HOM05D003774 ORTHO05D009174 9.0e-55 217.6 175 57.1
Thhalv10001825m.g Eutrema salsugineum HOM05D003774 ORTHO05D009174 1.2e-54 217.2 174 53.4
Lj3g0005610 Lotus japonicus HOM05D003774 ORTHO05D009174 1.2e-54 217.2 173 54.9
Zm00001eb348780 Zea mays HOM05D003774 ORTHO05D009174 1.2e-54 217.2 174 54.6
Medtr3g005060 Medicago truncatula HOM05D003774 ORTHO05D009174 1.5e-54 216.9 173 53.2
THA.LOC104816521 Tarenaya hassleriana HOM05D003774 ORTHO05D009174 1.5e-54 216.9 173 54.9
Gohir.D13G122800 Gossypium hirsutum HOM05D003774 ORTHO05D009174 2.6e-54 216.1 175 57.1
Gorai.013G137800 Gossypium raimondii HOM05D003774 ORTHO05D009174 2.6e-54 216.1 175 57.1
Lsat_1_v5_gn_1_25820 Lactuca sativa HOM05D003774 ORTHO05D009174 2.6e-54 216.1 173 56.6
Ah.05g178580 Amaranthus hybridus HOM05D003774 ORTHO05D009174 3.4e-54 215.7 174 56.3
Aqoxy5G02648 Aquilegia oxysepala HOM05D003774 ORTHO05D009174 3.4e-54 215.7 177 55.9
AUR62004600 Chenopodium quinoa HOM05D003774 ORTHO05D009174 1.0e-53 214.2 174 54.6
Nitab4.5_0001463g0050 Nicotiana tabacum HOM05D003774 ORTHO05D009174 1.0e-53 214.2 172 55.2
Oeu013896.2 Olea europaea HOM05D003774 ORTHO05D009174 1.0e-53 214.2 172 53.5
Nitab4.5_0005616g0010 Nicotiana tabacum HOM05D003774 ORTHO05D009174 2.9e-53 212.6 172 54.1
Aa31LG6G8720 Aethionema arabicum HOM05D003774 ORTHO05D009174 4.9e-53 211.8 173 53.8
MSTRG.22470 Avicennia marina HOM05D003774 ORTHO05D009174 1.4e-52 210.3 172 51.7
Cc10_g09600 Coffea canephora HOM05D003774 ORTHO05D009174 1.4e-52 210.3 168 54.8
AagrBONN_evm.TU.Sc2ySwM_228.1693 Anthoceros agrestis HOM05D003774 ORTHO05D009174 1.9e-52 209.9 176 53.4
Phvul.005G000200 Phaseolus vulgaris HOM05D003774 ORTHO05D009174 1.9e-52 209.9 173 54.9
AUR62023544 Chenopodium quinoa HOM05D003774 ORTHO05D009174 2.5e-52 209.5 174 54.0
TPR.G25492 Trifolium pratense HOM05D003774 ORTHO05D009174 3.2e-52 209.1 173 50.9
PGSC0003DMG402025647 Solanum tuberosum HOM05D003774 ORTHO05D009174 4.2e-52 208.8 172 53.5
HPP92_011955 Vanilla planifolia HOM05D003774 ORTHO05D009174 7.1e-52 208.0 173 54.3
Glyma.06G325100 Glycine max HOM05D003774 ORTHO05D009174 1.2e-51 207.2 174 54.0
Psat1g003280 Pisum sativum HOM05D003774 ORTHO05D009174 1.6e-51 206.8 173 50.9
A09p31810 Brassica napus HOM05D003774 ORTHO05D009174 2.7e-51 206.1 173 51.4
C06p11130 Brassica napus HOM05D003774 ORTHO05D009174 2.7e-51 206.1 173 51.4
BraA09t38720Z Brassica rapa HOM05D003774 ORTHO05D009174 2.7e-51 206.1 173 51.4
BcaC08g43731 Brassica carinata HOM05D003774 ORTHO05D009174 3.5e-51 205.7 173 51.4
BolC6t36236H Brassica oleracea HOM05D003774 ORTHO05D009174 3.5e-51 205.7 173 51.4
VMungo1080G0925 Vigna mungo HOM05D003774 ORTHO05D009174 3.5e-51 205.7 173 54.9
Sopen11g022610 Solanum pennellii HOM05D003774 ORTHO05D009174 4.6e-51 205.3 172 51.2
HPP92_011935 Vanilla planifolia HOM05D003774 ORTHO05D009174 4.6e-51 205.3 173 53.8
EL10Ac1g00136 Beta vulgaris HOM05D003774 ORTHO05D009174 1.0e-50 204.1 173 54.9
Migut.N03372 Erythranthe guttata HOM05D003774 ORTHO05D009174 1.5e-49 200.3 174 50.6
ECA247G3883 Erigeron canadensis HOM05D003774 ORTHO05D009174 1.9e-49 199.9 173 52.6
HanXRQChr02g0036581 Helianthus annuus HOM05D003774 ORTHO05D009174 2.5e-49 199.5 173 53.8
PGSC0003DMG401025647 Solanum tuberosum HOM05D003774 ORTHO05D009174 2.5e-49 199.5 166 53.0
Solyc11g027840.2 Solanum lycopersicum HOM05D003774 ORTHO05D009174 3.3e-49 199.1 168 50.6
BcaNung06721 Brassica carinata HOM05D003774 ORTHO05D009174 3.1e-47 192.6 165 52.1
SalBow6G0569 Salvia bowleyana HOM05D003774 ORTHO05D009174 2.0e-46 189.9 172 48.8
Cpa.g.sc66.2 Carica papaya HOM05D003774 ORTHO05D009174 2.6e-46 189.5 143 60.8
ClCG08G000170 Citrullus lanatus HOM05D003774 ORTHO05D009174 7.6e-46 188.0 173 51.4
SalBow6G5656 Salvia bowleyana HOM05D003774 ORTHO05D009174 2.2e-45 186.4 172 48.3
Mapoly0002s0135 Marchantia polymorpha HOM05D003774 ORTHO05D009174 1.1e-44 184.1 176 49.4
MELO3C022228.2 Cucumis melo HOM05D003774 ORTHO05D009174 4.2e-44 182.2 172 51.7
CsaV3_5G040550 Cucumis sativus L. HOM05D003774 ORTHO05D009174 1.6e-43 180.3 173 52.0
Glyma.04G256500 Glycine max HOM05D003774 ORTHO05D009174 1.0e-42 177.6 148 53.4
Duzib211G0171 Durio zibethinus HOM05D003774 ORTHO05D009174 6.7e-42 174.9 175 49.1
CSS0003364 Camellia sinensis var. sinensis HOM05D003774 ORTHO05D009174 4.1e-39 165.6 118 60.2
CSS0038880 Camellia sinensis var. sinensis HOM05D003774 ORTHO05D009174 6.9e-39 164.9 121 59.5
FAN04G1660 Fragaria x ananassa HOM05D003774 ORTHO05D009174 4.5e-38 162.2 129 57.4
SGA_v2.0_scaffold25G11034 Striga asiatica HOM05D003774 ORTHO05D009174 1.4e-36 157.1 133 51.1
CDE02G0175 Ceratophyllum demersum HOM05D003774 ORTHO05D009174 7.2e-36 154.8 175 42.3
CSS0038100 Camellia sinensis var. sinensis HOM05D003774 ORTHO05D009174 8.8e-34 147.9 121 54.5
Pp3c10_21530 Physcomitrium patens HOM05D003774 ORTHO05D009174 2.5e-28 129.8 193 38.3
Dinv19855 Davidia involucrata HOM05D003774 ORTHO05D009174 5.9e-22 108.6 77 59.7
Sc09g0006790 Simmondsia chinensis HOM05D003774 ORTHO05D009174 7.2e-20 101.7 77 57.1
CBR_g29932 Chara braunii HOM05D003774 ORTHO05D009174 3.0e-18 96.3 154 35.1
Medtr1g052490 Medicago truncatula HOM05D003774 ORTHO05D009174 4.0e-18 95.9 105 40.0
TAR636G2860 Trochodendron aralioides HOM05D003774 ORTHO05D009174 6.7e-18 95.1 80 53.8
Hund12209 Selenicereus undatus HOM05D001214 ORTHO05D001029 7.0e-15 85.1 177 28.8
DCAR_012171 Daucus carota HOM05D001214 ORTHO05D001029 7.2e-12 75.1 178 25.8
GSVIVG01011089001 Vitis vinifera HOM05D001214 ORTHO05D001029 3.6e-11 72.8 179 28.5
Migut.N02152 Erythranthe guttata HOM05D001214 ORTHO05D001029 1.0e-10 71.2 178 28.7
Potri.013G105634 Populus trichocarpa HOM05D003774 ORTHO05D009174 1.4e-10 70.9 149 32.9
vmacro08258 Vaccinium macrocarpon HOM05D001214 ORTHO05D001029 2.3e-10 70.1 172 28.5
arahy.Tifrunner.gnm1.ann1.CECC7V Arachis hypogaea HOM05D001214 ORTHO05D001029 3.0e-10 69.7 179 29.6
arahy.Tifrunner.gnm1.ann1.EGQH3V Arachis hypogaea HOM05D001214 ORTHO05D001029 3.0e-10 69.7 179 30.2
Eucgr.K03402 Eucalyptus grandis HOM05D001214 ORTHO05D001029 5.2e-10 68.9 179 27.4
Gohir.D10G171200 Gossypium hirsutum HOM05D001214 ORTHO05D001029 8.8e-10 68.2 177 27.1
Gorai.011G191300 Gossypium raimondii HOM05D001214 ORTHO05D001029 8.8e-10 68.2 177 27.1
FvH4_2g23960 Fragaria vesca HOM05D001214 ORTHO05D001029 1.2e-09 67.8 178 27.0
FAN20G1162 Fragaria x ananassa HOM05D001214 ORTHO05D001029 1.2e-09 67.8 174 27.6
SGA_v2.0_scaffold107G30791 Striga asiatica HOM05D001214 ORTHO05D001029 1.2e-09 67.8 176 26.7
Lj4g0017809 Lotus japonicus HOM05D001214 ORTHO05D001029 2.0e-09 67.0 179 29.1
MSTRG.12571 Avicennia marina HOM05D001214 ORTHO05D001029 2.6e-09 66.6 181 28.2
Phvul.005G151000 Phaseolus vulgaris HOM05D001214 ORTHO05D001029 2.6e-09 66.6 177 26.0
Eucgr.K03401 Eucalyptus grandis HOM05D001214 ORTHO05D001029 3.4e-09 66.2 186 26.9
Oeu029300.1 Olea europaea HOM05D001214 ORTHO05D001029 3.4e-09 66.2 177 28.2
TWI12G0478 Tripterygium wilfordii HOM05D001214 ORTHO05D001029 4.4e-09 65.9 178 25.3
FAN27G1302 Fragaria x ananassa HOM05D001214 ORTHO05D001029 7.5e-09 65.1 174 26.4
Peaxi162Scf00980g00014 Petunia axillaris HOM05D001214 ORTHO05D001029 9.8e-09 64.7 180 25.6
Pp3c16_5740 Physcomitrium patens HOM05D004677 ORTHO05D005746 1.3e-08 64.3 192 33.9
FvH4_4g14311 Fragaria vesca HOM05D001214 ORTHO05D001029 1.7e-08 63.9 182 26.9
FAN17G1990 Fragaria x ananassa HOM05D001214 ORTHO05D001029 1.7e-08 63.9 182 27.5
VMungo1080G0938 Vigna mungo HOM05D001214 ORTHO05D001029 1.7e-08 63.9 177 25.4
Zm00001eb287550 Zea mays HOM05D001214 ORTHO05D001029 1.7e-08 63.9 177 24.9
FAN22G1292 Fragaria x ananassa HOM05D001214 ORTHO05D001029 2.8e-08 63.2 182 26.9
RcHm_v2.0_Chr4g0418701 Rosa chinensis HOM05D001214 ORTHO05D001029 2.8e-08 63.2 181 26.5
RcHm_v2.0_Chr6g0291621 Rosa chinensis HOM05D001214 ORTHO05D001029 2.8e-08 63.2 176 26.1
Cpa.g.sc16.40 Carica papaya HOM05D001214 ORTHO05D001029 3.7e-08 62.8 179 26.3
MBI17_g11990_MAGBIO Magnolia biondii HOM05D001214 ORTHO05D001029 6.3e-08 62.0 179 27.9
FAN24G0215 Fragaria x ananassa HOM05D001214 ORTHO05D001029 8.3e-08 61.6 169 27.2
VMungo1080G1062 Vigna mungo HOM05D001214 ORTHO05D001029 8.3e-08 61.6 177 23.7
MD16G1181900 Malus domestica HOM05D001214 ORTHO05D001029 1.1e-07 61.2 177 25.4
Manes.13G068200 Manihot esculenta HOM05D004677 ORTHO05D005746 1.1e-07 61.2 194 31.4
Rhsim04G0208300 Rhododendron simsii HOM05D001214 ORTHO05D001029 1.4e-07 60.8 172 25.0
TWI73G0613 Tripterygium wilfordii HOM05D001214 ORTHO05D001029 1.4e-07 60.8 178 24.7
Gohir.A10G165100 Gossypium hirsutum HOM05D001214 ORTHO05D001029 1.8e-07 60.5 179 26.3
RcHm_v2.0_Chr6g0291611 Rosa chinensis HOM05D001214 ORTHO05D001029 7.0e-07 58.5 136 27.9


User provided reference genes

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