Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_39181 Sequoiadendron giganteum HOM05D005414 ORTHO05D006844 5.8e-68 260.8 131 100.0
Ciclev10002272m.g Citrus clementina HOM05D005414 ORTHO05D006844 9.0e-37 157.1 105 68.6
GSVIVG01013697001 Vitis vinifera HOM05D005414 ORTHO05D006844 8.4e-35 150.6 108 64.8
Atru.chr13.1979 Acer truncatum HOM05D005414 ORTHO05D006844 1.1e-34 150.2 110 67.3
Nn5g28873 Nelumbo nucifera HOM05D005414 ORTHO05D000799 1.9e-34 149.4 106 67.9
MBI04_g42207_MAGBIO Magnolia biondii HOM05D005414 ORTHO05D006844 7.1e-34 147.5 106 67.0
Phvul.007G085100 Phaseolus vulgaris HOM05D005414 ORTHO05D006844 7.1e-34 147.5 113 62.8
Pp3c21_15140 Physcomitrium patens HOM05D005414 ORTHO05D006844 2.1e-33 146.0 116 60.3
Duzib041G0057 Durio zibethinus HOM05D005414 ORTHO05D006844 3.5e-33 145.2 112 58.9
SalBow7G3693 Salvia bowleyana HOM05D005414 ORTHO05D006844 4.6e-33 144.8 106 66.0
Actinidia17760 Actinidia chinensis HOM05D005414 ORTHO05D006844 6.0e-33 144.4 105 65.7
Potri.002G062600 Populus trichocarpa HOM05D005414 ORTHO05D006844 6.0e-33 144.4 105 64.8
Eucgr.F02672 Eucalyptus grandis HOM05D005414 ORTHO05D006844 7.9e-33 144.1 106 60.4
Aqoxy5G02011 Aquilegia oxysepala HOM05D005414 ORTHO05D006844 1.0e-32 143.7 108 60.2
PGR042G0638 Punica granatum HOM05D005414 ORTHO05D006844 1.0e-32 143.7 108 61.1
CSS0029717 Camellia sinensis var. sinensis HOM05D005414 ORTHO05D006844 1.7e-32 142.9 105 64.8
CSS0025663 Camellia sinensis var. sinensis HOM05D005414 ORTHO05D006844 2.3e-32 142.5 105 63.8
TAR628G0132 Trochodendron aralioides HOM05D005414 ORTHO05D000799 3.0e-32 142.1 109 62.4
Sabra05G0151200 Salix brachista HOM05D005414 ORTHO05D006844 5.1e-32 141.4 105 61.9
Sc26g0002600 Simmondsia chinensis HOM05D005414 ORTHO05D006844 5.1e-32 141.4 115 56.5
PSO210G6322 Papaver somniferum HOM05D005414 ORTHO05D006844 6.6e-32 141.0 125 54.4
Rhsim06G0093200 Rhododendron simsii HOM05D005414 ORTHO05D006844 6.6e-32 141.0 113 57.5
CiPaw.16G007400 Carya illinoinensis HOM05D005414 ORTHO05D006844 8.7e-32 140.6 106 65.1
FvH4_2g12810 Fragaria vesca HOM05D005414 ORTHO05D006844 8.7e-32 140.6 107 62.6
FAN24G1739 Fragaria x ananassa HOM05D005414 ORTHO05D006844 8.7e-32 140.6 107 62.6
RcHm_v2.0_Chr6g0273701 Rosa chinensis HOM05D005414 ORTHO05D006844 8.7e-32 140.6 107 59.8
FAN27G1467 Fragaria x ananassa HOM05D005414 ORTHO05D006844 1.1e-31 140.2 107 61.7
Solyc04g072031.1 Solanum lycopersicum HOM05D005414 ORTHO05D006844 1.5e-31 139.8 124 52.4
Solyc04g072050.4 Solanum lycopersicum HOM05D005414 ORTHO05D006844 1.5e-31 139.8 124 52.4
Sopen04g028220 Solanum pennellii HOM05D005414 ORTHO05D006844 1.5e-31 139.8 124 52.4
VMungo0720G1060 Vigna mungo HOM05D005414 ORTHO05D006844 1.5e-31 139.8 107 61.7
CAN.G564.21 Capsicum annuum HOM05D005414 ORTHO05D006844 1.9e-31 139.4 125 51.2
Gohir.A06G116400 Gossypium hirsutum HOM05D005414 ORTHO05D006844 1.9e-31 139.4 107 61.7
Gorai.010G131400 Gossypium raimondii HOM05D005414 ORTHO05D006844 1.9e-31 139.4 107 61.7
Medtr1g097430 Medicago truncatula HOM05D005414 ORTHO05D006844 1.9e-31 139.4 107 60.7
Peaxi162Scf00226g00114 Petunia axillaris HOM05D005414 ORTHO05D006844 1.9e-31 139.4 108 59.3
Glyma.20G171300 Glycine max HOM05D005414 ORTHO05D006844 2.5e-31 139.0 106 62.3
TPR.G17052 Trifolium pratense HOM05D005414 ORTHO05D006844 4.3e-31 138.3 107 60.7
Phvul.007G085000 Phaseolus vulgaris HOM05D005414 ORTHO05D006844 7.4e-31 137.5 107 63.6
Psat6g189560 Pisum sativum HOM05D005414 ORTHO05D006844 9.6e-31 137.1 106 61.3
Potri.005G198600 Populus trichocarpa HOM05D005414 ORTHO05D006844 9.6e-31 137.1 105 61.0
Thecc.08G163500 Theobroma cacao HOM05D005414 ORTHO05D006844 9.6e-31 137.1 106 60.4
AagrBONN_evm.TU.Sc2ySwM_228.1176 Anthoceros agrestis HOM05D005414 ORTHO05D006844 1.3e-30 136.7 125 51.2
PSO170G2436 Papaver somniferum HOM05D005414 ORTHO05D006844 1.3e-30 136.7 124 54.8
SGA_v2.0_scaffold188G40302 Striga asiatica HOM05D005414 ORTHO05D006844 1.3e-30 136.7 113 60.2
Cc10_g06420 Coffea canephora HOM05D005414 ORTHO05D006844 1.6e-30 136.3 104 60.6
Hma1.2p1_2282F.1_g318850 Hydrangea macrophylla HOM05D005414 ORTHO05D006844 1.6e-30 136.3 115 57.4
Prupe.8G044100 Prunus persica HOM05D005414 ORTHO05D006844 2.1e-30 136.0 108 60.2
Zm00001eb385480 Zea mays HOM05D005414 ORTHO05D006844 2.1e-30 136.0 106 62.3
Gohir.D06G114900 Gossypium hirsutum HOM05D005414 ORTHO05D006844 3.6e-30 135.2 112 59.8
PGSC0003DMG400031145 Solanum tuberosum HOM05D005414 ORTHO05D006844 4.8e-30 134.8 104 58.7
MD10G1038100 Malus domestica HOM05D005414 ORTHO05D006844 6.2e-30 134.4 107 58.9
ATR1120G143 Amborella trichopoda HOM05D005414 ORTHO05D006844 8.1e-30 134.0 107 61.7
unitig_32.g11168 Utricularia gibba HOM05D005414 ORTHO05D006844 1.1e-29 133.7 111 59.5
arahy.Tifrunner.gnm1.ann1.X1PAW1 Arachis hypogaea HOM05D005414 ORTHO05D006844 1.4e-29 133.3 117 57.3
Os06g0581300 Oryza sativa ssp. japonica HOM05D005414 ORTHO05D006844 1.4e-29 133.3 110 57.3
DCAR_009609 Daucus carota HOM05D005414 ORTHO05D006844 1.8e-29 132.9 104 58.7
Lj5g0014662 Lotus japonicus HOM05D005414 ORTHO05D006844 2.4e-29 132.5 107 60.7
arahy.Tifrunner.gnm1.ann1.66PYZ2 Arachis hypogaea HOM05D005414 ORTHO05D006844 4.0e-29 131.7 117 57.3
Mapoly0067s0091 Marchantia polymorpha HOM05D005414 ORTHO05D006844 4.0e-29 131.7 124 50.0
MSTRG.24938 Avicennia marina HOM05D005414 ORTHO05D006844 5.3e-29 131.3 115 56.5
vmacro21198 Vaccinium macrocarpon HOM05D005414 ORTHO05D006844 5.3e-29 131.3 112 53.6
HPP92_008789 Vanilla planifolia HOM05D005414 ORTHO05D006844 5.3e-29 131.3 111 58.6
Lalb_Chr02g0141631 Lupinus albus HOM05D005414 ORTHO05D006844 9.0e-29 130.6 108 57.4
CDE05G3275 Ceratophyllum demersum HOM05D005414 ORTHO05D006844 1.2e-28 130.2 104 56.7
HanXRQChr05g0144171 Helianthus annuus HOM05D005414 ORTHO05D006844 1.2e-28 130.2 115 53.9
Migut.C00158 Erythranthe guttata HOM05D005414 ORTHO05D006844 5.8e-28 127.9 106 57.5
Glyma.20G171400 Glycine max HOM05D005414 ORTHO05D006844 5.8e-28 127.9 106 58.5
Oeu061453.3 Olea europaea HOM05D005414 ORTHO05D006844 5.8e-28 127.9 121 51.2
Sabra02G0050500 Salix brachista HOM05D005414 ORTHO05D006844 5.8e-28 127.9 105 60.0
ECA232G1443 Erigeron canadensis HOM05D005414 ORTHO05D006844 1.7e-27 126.3 115 54.8
CDE05G1245 Ceratophyllum demersum HOM05D005414 ORTHO05D006844 2.2e-27 125.9 118 51.7
CANSAT25G0738 Cannabis sativa HOM05D005414 ORTHO05D006844 8.4e-27 124.0 113 57.5
Sopen04g028200 Solanum pennellii HOM05D005414 ORTHO05D006844 1.4e-26 123.2 124 47.6
Hund26672 Selenicereus undatus HOM05D005414 ORTHO05D006844 2.4e-26 122.5 111 54.1
THA.LOC104809748 Tarenaya hassleriana HOM05D005414 ORTHO05D006844 5.5e-26 121.3 110 54.5
Manes.18G096200 Manihot esculenta HOM05D005414 ORTHO05D006844 1.2e-25 120.2 112 53.6
Sed0023257 Sechium edule HOM05D005414 ORTHO05D006844 1.6e-25 119.8 126 49.2
BcaNung07190 Brassica carinata HOM05D005414 ORTHO05D006844 6.0e-25 117.9 108 54.6
BcaNung07397 Brassica carinata HOM05D005414 ORTHO05D006844 6.0e-25 117.9 108 54.6
A09p41990 Brassica napus HOM05D005414 ORTHO05D006844 6.0e-25 117.9 108 54.6
C05p21870 Brassica napus HOM05D005414 ORTHO05D006844 6.0e-25 117.9 108 54.6
BolC5t30882H Brassica oleracea HOM05D005414 ORTHO05D006844 6.0e-25 117.9 108 54.6
BraA09t39686Z Brassica rapa HOM05D005414 ORTHO05D006844 6.0e-25 117.9 108 54.6
Nitab4.5_0001000g0190 Nicotiana tabacum HOM05D005414 ORTHO05D006844 7.9e-25 117.5 112 49.1
EL10Ac1g01628 Beta vulgaris HOM05D005414 ORTHO05D006844 1.0e-24 117.1 143 43.4
CsaV3_6G004870 Cucumis sativus L. HOM05D005414 ORTHO05D006844 1.0e-24 117.1 112 52.7
Nitab4.5_0007691g0020 Nicotiana tabacum HOM05D005414 ORTHO05D006844 1.0e-24 117.1 112 49.1
SMO331G0045 Selaginella moellendorffii HOM05D005414 ORTHO05D006844 1.3e-24 116.7 105 51.4
Aa31LG7G6700 Aethionema arabicum HOM05D005414 ORTHO05D006844 1.8e-24 116.3 110 50.9
Lsat_1_v5_gn_9_42481 Lactuca sativa HOM05D005414 ORTHO05D006844 2.3e-24 115.9 104 53.8
MELO3C030042.2 Cucumis melo HOM05D005414 ORTHO05D006844 3.0e-24 115.5 108 49.1
CBR_g58808 Chara braunii HOM05D005414 ORTHO05D006844 5.1e-24 114.8 116 49.1
QL02p036452 Quercus lobata HOM05D005414 ORTHO05D006844 6.7e-24 114.4 105 54.3
QL02p036925 Quercus lobata HOM05D005414 ORTHO05D006844 6.7e-24 114.4 105 54.3
Sp1g20260 Schrenkiella parvula HOM05D005414 ORTHO05D006844 8.7e-24 114.0 108 51.9
TWI60G0913 Tripterygium wilfordii HOM05D005414 ORTHO05D006844 8.7e-24 114.0 82 63.4
Thhalv10008541m.g Eutrema salsugineum HOM05D005414 ORTHO05D006844 2.5e-23 112.5 108 50.9
AT1G22750 Arabidopsis thaliana HOM05D005414 ORTHO05D006844 5.6e-23 111.3 114 50.9
Carub.0001s2226 Capsella rubella HOM05D005414 ORTHO05D006844 5.6e-23 111.3 108 52.8
CARHR023110 Cardamine hirsuta HOM05D005414 ORTHO05D006844 5.6e-23 111.3 108 49.1
FAN15G1775 Fragaria x ananassa HOM05D005414 ORTHO05D006844 9.6e-23 110.5 142 45.1
AL1G36290 Arabidopsis lyrata HOM05D005414 ORTHO05D006844 1.3e-22 110.2 108 51.9
ClCG08G007190 Citrullus lanatus HOM05D005414 ORTHO05D006844 1.6e-22 109.8 108 47.2
CAN.G564.22 Capsicum annuum HOM05D005414 ORTHO05D006844 3.7e-22 108.6 109 46.8
Lsat_1_v5_gn_4_170780 Lactuca sativa HOM05D005414 ORTHO05D006844 1.2e-20 103.6 115 46.1
Cpa.g.sc26.122 Carica papaya HOM05D005414 ORTHO05D006844 1.0e-19 100.5 105 46.7
Lsat_1_v5_gn_9_42501 Lactuca sativa HOM05D005414 ORTHO05D006844 2.2e-19 99.4 115 42.6
MELO3C019962.2 Cucumis melo HOM05D005414 ORTHO05D006844 4.9e-19 98.2 112 43.8
CsaV3_6G004860 Cucumis sativus L. HOM05D005414 ORTHO05D006844 1.9e-18 96.3 111 42.3
ECA232G0081 Erigeron canadensis HOM05D005414 ORTHO05D006844 7.9e-17 90.9 101 42.6
HanXRQChr11g0320151 Helianthus annuus HOM05D005414 ORTHO05D006844 1.8e-16 89.7 116 38.8
ECA232G3911 Erigeron canadensis HOM05D005414 ORTHO05D006844 5.1e-16 88.2 104 40.4
HanXRQChr07g0196141 Helianthus annuus HOM05D005414 ORTHO05D006844 1.1e-15 87.0 110 42.7
HanXRQChr11g0320141 Helianthus annuus HOM05D005414 ORTHO05D006844 1.3e-14 83.6 104 38.5
HanXRQChr11g0320131 Helianthus annuus HOM05D005414 ORTHO05D006844 2.1e-14 82.8 104 35.6
HanXRQChr11g0320121 Helianthus annuus HOM05D005414 ORTHO05D006844 4.8e-14 81.6 108 34.3
HanXRQChr15g0484961 Helianthus annuus HOM05D005414 ORTHO05D006844 3.1e-13 79.0 105 42.9
HanXRQChr15g0485041 Helianthus annuus HOM05D005414 ORTHO05D006844 4.1e-13 78.6 113 35.4
Sed0017348 Sechium edule HOM05D005414 ORTHO05D006844 6.9e-13 77.8 112 42.0
Lsat_1_v5_gn_1_83841 Lactuca sativa HOM05D005414 ORTHO05D006844 1.3e-11 73.6 104 39.4
AUR62032103 Chenopodium quinoa HOM05D005414 ORTHO05D006844 2.2e-11 72.8 54 63.0
HanXRQChr15g0484681 Helianthus annuus HOM05D005414 ORTHO05D006844 5.0e-11 71.6 104 36.5
Lsat_1_v5_gn_1_117841 Lactuca sativa HOM05D001315 ORTHO05D004199 4.2e-10 68.6 75 41.3
Lsat_1_v5_gn_1_20800 Lactuca sativa HOM05D000069 ORTHO05D006844 4.2e-10 68.6 89 39.3
Lsat_1_v5_gn_2_41300 Lactuca sativa HOM05D005414 ORTHO05D006844 9.3e-10 67.4 109 37.6
ECA233G0443 Erigeron canadensis HOM05D005414 ORTHO05D006844 3.9e-08 62.0 72 37.5
HanXRQChr11g0320081 Helianthus annuus HOM05D005414 ORTHO05D006844 5.7e-07 58.2 61 37.7
Lsat_1_v5_gn_1_83961 Lactuca sativa HOM05D005414 ORTHO05D006844 1.6e-06 56.6 78 38.5


User provided reference genes

Program Settings