Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_39165 Sequoiadendron giganteum HOM05D003913 ORTHO05D004803 1.9e-133 479.9 407 100.0
Zm00001eb362180 Zea mays HOM05D003913 ORTHO05D004803 8.3e-49 198.7 394 56.9
Oeu053831.1 Olea europaea HOM05D003913 ORTHO05D004803 3.9e-46 189.9 388 63.4
AagrBONN_evm.TU.Sc2ySwM_368.376 Anthoceros agrestis HOM05D003913 ORTHO05D004803 4.3e-45 186.4 407 61.7
Sed0012824 Sechium edule HOM05D003913 ORTHO05D004803 5.6e-45 186.0 387 55.6
Lalb_Chr20g0121511 Lupinus albus HOM05D003913 ORTHO05D004803 1.2e-44 184.9 389 39.6
Zm00001eb139680 Zea mays HOM05D003913 ORTHO05D004803 3.6e-44 183.3 395 63.5
Lj5g0008809 Lotus japonicus HOM05D003913 ORTHO05D004803 8.1e-44 182.2 385 35.6
BcaB03g15621 Brassica carinata HOM05D003913 ORTHO05D004803 6.8e-43 179.1 397 58.9
AL2G31420 Arabidopsis lyrata HOM05D003913 ORTHO05D004803 1.5e-42 177.9 395 60.8
BcaC08g46615 Brassica carinata HOM05D003913 ORTHO05D004803 2.0e-42 177.6 392 60.5
LjContig00222g0022410 Lotus japonicus HOM05D003913 ORTHO05D004803 2.6e-42 177.2 389 38.6
BcaC08g45753 Brassica carinata HOM05D003913 ORTHO05D004803 3.4e-42 176.8 400 62.0
CiPaw.15G007000 Carya illinoinensis HOM05D003913 ORTHO05D004803 5.8e-42 176.0 386 60.1
AT1G71840 Arabidopsis thaliana HOM05D003913 ORTHO05D004803 9.9e-42 175.3 395 63.3
Aa31LG4G8790 Aethionema arabicum HOM05D003913 ORTHO05D004803 1.3e-41 174.9 408 60.3
Cc11_g02860 Coffea canephora HOM05D003913 ORTHO05D004803 1.3e-41 174.9 384 63.3
Nn3g16733 Nelumbo nucifera HOM05D003913 ORTHO05D004803 1.3e-41 174.9 385 66.0
C06p45910 Brassica napus HOM05D003913 ORTHO05D004803 2.9e-41 173.7 384 60.9
Glyma.20G173100 Glycine max HOM05D003913 ORTHO05D004803 2.9e-41 173.7 382 45.0
SalBow7G2889 Salvia bowleyana HOM05D003913 ORTHO05D004803 2.9e-41 173.7 393 57.0
THA.LOC104826775 Tarenaya hassleriana HOM05D003913 ORTHO05D004803 2.9e-41 173.7 391 62.4
Thhalv10018505m.g Eutrema salsugineum HOM05D003913 ORTHO05D004803 3.8e-41 173.3 386 62.2
BolC6t38638H Brassica oleracea HOM05D003913 ORTHO05D004803 4.9e-41 172.9 410 45.1
Os03g0685600 Oryza sativa ssp. japonica HOM05D003913 ORTHO05D004803 4.9e-41 172.9 393 56.7
arahy.Tifrunner.gnm1.ann1.0Z7T57 Arachis hypogaea HOM05D003913 ORTHO05D004803 6.4e-41 172.6 378 34.9
arahy.Tifrunner.gnm1.ann1.F1WV5B Arachis hypogaea HOM05D003913 ORTHO05D004803 8.4e-41 172.2 378 34.7
HPP92_008098 Vanilla planifolia HOM05D003913 ORTHO05D004803 1.1e-40 171.8 387 65.6
CARHR290910 Cardamine hirsuta HOM05D003913 ORTHO05D004803 1.4e-40 171.4 388 54.9
Dinv13071 Davidia involucrata HOM05D003913 ORTHO05D004803 3.2e-40 170.2 385 38.4
Sp5g26870 Schrenkiella parvula HOM05D003913 ORTHO05D004803 3.2e-40 170.2 398 59.5
SpUn0020_0100 Schrenkiella parvula HOM05D003913 ORTHO05D004803 3.2e-40 170.2 398 59.5
BraA07t30691Z Brassica rapa HOM05D003913 ORTHO05D004803 7.1e-40 169.1 410 53.4
CDE08G0059 Ceratophyllum demersum HOM05D003913 ORTHO05D004803 2.1e-39 167.5 384 63.5
Ca_30575_v3 Cicer arietinum L. HOM05D003913 ORTHO05D004803 2.1e-39 167.5 393 36.9
SMO347G0114 Selaginella moellendorffii HOM05D003913 ORTHO05D004803 2.1e-39 167.5 402 43.8
Phvul.011G104600 Phaseolus vulgaris HOM05D003913 ORTHO05D004803 7.8e-39 165.6 387 50.4
ATR0001G003 Amborella trichopoda HOM05D003913 ORTHO05D004803 1.7e-38 164.5 340 48.8
A07p30560 Brassica napus HOM05D003913 ORTHO05D004803 1.7e-38 164.5 424 39.4
ECA232G2276 Erigeron canadensis HOM05D003913 ORTHO05D004803 1.7e-38 164.5 385 65.2
C06p35320 Brassica napus HOM05D003913 ORTHO05D004803 3.0e-38 163.7 424 52.1
CsaV3_6G002750 Cucumis sativus L. HOM05D003913 ORTHO05D004803 5.1e-38 162.9 387 57.9
BolC6t39643H Brassica oleracea HOM05D003913 ORTHO05D004803 1.1e-37 161.8 395 58.5
Dinv44716 Davidia involucrata HOM05D003913 ORTHO05D004803 1.1e-37 161.8 385 40.5
HanXRQChr11g0320411 Helianthus annuus HOM05D003913 ORTHO05D004803 1.9e-37 161.0 385 65.2
PGR031G2719 Punica granatum HOM05D003913 ORTHO05D004803 1.9e-37 161.0 385 57.4
GSVIVG01015205001 Vitis vinifera HOM05D003913 ORTHO05D004803 2.5e-37 160.6 387 50.4
VMungo1080G1176 Vigna mungo HOM05D003913 ORTHO05D004803 3.3e-37 160.2 387 45.5
ClCG08G002560 Citrullus lanatus HOM05D003913 ORTHO05D004803 4.3e-37 159.8 387 57.4
Gorai.006G187200 Gossypium raimondii HOM05D003913 ORTHO05D004803 4.3e-37 159.8 392 34.4
Gohir.D09G165400 Gossypium hirsutum HOM05D003913 ORTHO05D004803 9.6e-37 158.7 392 34.2
Migut.J01123 Erythranthe guttata HOM05D003913 ORTHO05D004803 1.3e-36 158.3 388 38.9
Nitab4.5_0002890g0020 Nicotiana tabacum HOM05D003913 ORTHO05D004803 2.1e-36 157.5 346 37.0
MD02G1272000 Malus domestica HOM05D003913 ORTHO05D004803 2.8e-36 157.1 387 57.6
BraA07t31364Z Brassica rapa HOM05D003913 ORTHO05D004803 3.6e-36 156.8 386 59.3
MELO3C024997.2 Cucumis melo HOM05D003913 ORTHO05D004803 3.6e-36 156.8 387 56.8
TWI12G0147 Tripterygium wilfordii HOM05D003913 ORTHO05D004803 3.6e-36 156.8 385 61.8
Pp3c14_20020 Physcomitrium patens HOM05D003913 ORTHO05D004803 6.2e-36 156.0 401 55.4
Potri.019G087200 Populus trichocarpa HOM05D003913 ORTHO05D004803 8.1e-36 155.6 392 55.1
Gohir.A09G169700 Gossypium hirsutum HOM05D003913 ORTHO05D004803 2.4e-35 154.1 393 38.7
CSS0047372 Camellia sinensis var. sinensis HOM05D003913 ORTHO05D004803 4.0e-35 153.3 393 62.3
Hund19608 Selenicereus undatus HOM05D003913 ORTHO05D004803 4.0e-35 153.3 427 57.1
A07p37990 Brassica napus HOM05D003913 ORTHO05D004803 5.3e-35 152.9 396 53.0
Psat6g188560 Pisum sativum HOM05D000168 ORTHO05D004803 5.3e-35 152.9 369 29.0
Gohir.D06G113300 Gossypium hirsutum HOM05D003913 ORTHO05D004803 9.0e-35 152.1 393 37.2
Gorai.010G129100 Gossypium raimondii HOM05D003913 ORTHO05D004803 9.0e-35 152.1 393 36.9
Lsat_1_v5_gn_9_43060 Lactuca sativa HOM05D003913 ORTHO05D004803 9.0e-35 152.1 385 63.1
Prupe.8G049100 Prunus persica HOM05D003913 ORTHO05D004803 1.2e-34 151.8 391 54.7
Sed0004416 Sechium edule HOM05D003913 ORTHO05D004803 1.5e-34 151.4 387 56.1
Manes.02G188000 Manihot esculenta HOM05D003913 ORTHO05D004803 2.0e-34 151.0 389 55.8
Mapoly0155s0005 Marchantia polymorpha HOM05D003913 ORTHO05D004803 2.0e-34 151.0 395 34.4
MD07G1041000 Malus domestica HOM05D003913 ORTHO05D004803 5.8e-34 149.4 387 55.0
Aqoxy1G00206 Aquilegia oxysepala HOM05D003913 ORTHO05D004803 9.9e-34 148.7 382 55.8
unitig_747.g21315 Utricularia gibba HOM05D003913 ORTHO05D004803 1.3e-33 148.3 385 37.4
RcHm_v2.0_Chr7g0210071 Rosa chinensis HOM05D003913 ORTHO05D004803 2.9e-33 147.1 384 55.2
FAN04G3257 Fragaria x ananassa HOM05D003913 ORTHO05D004803 4.9e-33 146.4 420 49.5
FvH4_2g12470 Fragaria vesca HOM05D003913 ORTHO05D004803 1.1e-32 145.2 389 61.7
FAN24G0738 Fragaria x ananassa HOM05D003913 ORTHO05D004803 1.1e-32 145.2 389 62.5
RcHm_v2.0_Chr6g0272901 Rosa chinensis HOM05D003913 ORTHO05D004803 1.1e-32 145.2 385 61.8
TWI75G1061 Tripterygium wilfordii HOM05D003913 ORTHO05D004803 1.9e-32 144.4 385 61.3
VMungo0720G0336 Vigna mungo HOM05D003913 ORTHO05D004803 1.9e-32 144.4 389 45.8
FvH4_5g22350 Fragaria vesca HOM05D003913 ORTHO05D004803 2.4e-32 144.1 384 54.9
FAN18G2025 Fragaria x ananassa HOM05D003913 ORTHO05D004803 2.4e-32 144.1 384 54.9
FAN18G2798 Fragaria x ananassa HOM05D003913 ORTHO05D004803 2.4e-32 144.1 384 54.9
FAN08G0696 Fragaria x ananassa HOM05D003913 ORTHO05D004803 3.2e-32 143.7 386 54.7
Oeu053830.1 Olea europaea HOM05D003913 ORTHO05D004803 4.2e-32 143.3 388 59.8
Potri.013G116900 Populus trichocarpa HOM05D003913 ORTHO05D004803 1.6e-31 141.4 401 51.1
arahy.Tifrunner.gnm1.ann1.A7TGXU Arachis hypogaea HOM05D003913 ORTHO05D004803 2.1e-31 141.0 414 30.9
Ciclev10008663m.g Citrus clementina HOM05D003913 ORTHO05D004803 2.7e-31 140.6 389 54.0
Gohir.A06G109200 Gossypium hirsutum HOM05D003913 ORTHO05D004803 2.7e-31 140.6 364 34.6
Rhsim04G0038100 Rhododendron simsii HOM05D003913 ORTHO05D004803 2.7e-31 140.6 406 59.4
MBI10_g42737_MAGBIO Magnolia biondii HOM05D003913 ORTHO05D004803 4.6e-31 139.8 340 66.5
TAR625G1217 Trochodendron aralioides HOM05D003913 ORTHO05D004803 4.6e-31 139.8 385 60.3
AUR62017935 Chenopodium quinoa HOM05D003913 ORTHO05D004803 7.8e-31 139.0 394 58.6
MSTRG.9615 Avicennia marina HOM05D003913 ORTHO05D004803 2.3e-30 137.5 347 56.8
ECA236G4407 Erigeron canadensis HOM05D003913 ORTHO05D004803 2.3e-30 137.5 379 30.3
EL10Ac5g10958 Beta vulgaris HOM05D003913 ORTHO05D004803 3.0e-30 137.1 390 26.9
TPR.G30584 Trifolium pratense HOM05D003913 ORTHO05D004803 3.9e-30 136.7 402 34.3
Nitab4.5_0000366g0190 Nicotiana tabacum HOM05D003913 ORTHO05D004803 6.6e-30 136.0 389 54.5
PSO675G8150 Papaver somniferum HOM05D003913 ORTHO05D004803 8.7e-30 135.6 398 60.6
Actinidia29569 Actinidia chinensis HOM05D003913 ORTHO05D004803 1.9e-29 134.4 387 54.5
Cfa018220 Carpinus fangiana HOM05D003913 ORTHO05D004803 3.3e-29 133.7 341 66.3
PGSC0003DMG400028735 Solanum tuberosum HOM05D003913 ORTHO05D004803 3.3e-29 133.7 389 54.2
Lj2C196T3 Lonicera japonica HOM05D003913 ORTHO05D004803 9.6e-29 132.1 390 33.1
GSVIVG01001592001 Vitis vinifera HOM05D003913 ORTHO05D004803 9.6e-29 132.1 385 60.3
EL10Ac6g15251 Beta vulgaris HOM05D003913 ORTHO05D004803 1.3e-28 131.7 391 62.4
Medtr1g097140 Medicago truncatula HOM05D003913 ORTHO05D004803 1.6e-28 131.3 401 25.7
Hma1.2p1_0276F.1_g111300 Hydrangea macrophylla HOM05D003913 ORTHO05D004803 2.1e-28 131.0 319 68.7
Carub.0002s1860 Capsella rubella HOM05D003913 ORTHO05D004803 4.8e-28 129.8 396 59.8
Aa31LG7G6630 Aethionema arabicum HOM05D003913 ORTHO05D004803 6.2e-28 129.4 395 27.1
EL10Ac9g21859 Beta vulgaris HOM05D003913 ORTHO05D004803 6.2e-28 129.4 330 33.3
Duzib211G0424 Durio zibethinus HOM05D003913 ORTHO05D004803 1.1e-27 128.6 391 39.6
Lj4A109T49 Lonicera japonica HOM05D003913 ORTHO05D004803 2.4e-27 127.5 385 57.1
CANSAT25G1043 Cannabis sativa HOM05D003913 ORTHO05D004803 5.3e-27 126.3 391 53.7
PSO541G3150 Papaver somniferum HOM05D003913 ORTHO05D004803 5.3e-27 126.3 361 56.8
Migut.D01748 Erythranthe guttata HOM05D003913 ORTHO05D004803 9.0e-27 125.6 342 65.2
Solyc07g008860.3 Solanum lycopersicum HOM05D003913 ORTHO05D004803 1.5e-26 124.8 389 53.5
Nitab4.5_0002890g0010 Nicotiana tabacum HOM05D003913 ORTHO05D004803 2.0e-26 124.4 327 34.6
Migut.I00088 Erythranthe guttata HOM05D003913 ORTHO05D004803 2.6e-26 124.0 396 38.6
Ah.03g146560 Amaranthus hybridus HOM05D003913 ORTHO05D004803 3.4e-26 123.6 118 56.8
FAN20G2057 Fragaria x ananassa HOM05D003913 ORTHO05D004803 3.4e-26 123.6 318 51.3
Sabra13G0099000 Salix brachista HOM05D003913 ORTHO05D004803 4.5e-26 123.2 387 53.7
Sopen07g004790 Solanum pennellii HOM05D003913 ORTHO05D004803 5.8e-26 122.9 389 53.2
Atru.chr13.1880 Acer truncatum HOM05D003913 ORTHO05D004803 7.6e-26 122.5 385 54.3
DCAR_000644 Daucus carota HOM05D003913 ORTHO05D004803 7.6e-26 122.5 117 59.0
Sc16g0003970 Simmondsia chinensis HOM05D003913 ORTHO05D004803 7.6e-26 122.5 338 65.1
Sabra19G0101300 Salix brachista HOM05D003913 ORTHO05D004803 9.9e-26 122.1 398 58.5
COL.COLO4_03395 Corchorus olitorius HOM05D003913 ORTHO05D004803 6.4e-25 119.4 114 56.1
DCAR_004603 Daucus carota HOM05D000366 ORTHO05D000437 1.9e-24 117.9 109 55.0
QL02p034830 Quercus lobata HOM05D003913 ORTHO05D004803 1.9e-24 117.9 102 60.8
SGA_v2.0_scaffold114G31919 Striga asiatica HOM05D003913 ORTHO05D004803 1.9e-24 117.9 341 55.4
Thecc.08G198300 Theobroma cacao HOM05D003913 ORTHO05D004803 1.9e-24 117.9 114 53.5
AUR62003626 Chenopodium quinoa HOM05D003913 ORTHO05D004803 5.4e-24 116.3 112 53.6
SMO367G0065 Selaginella moellendorffii HOM05D003913 ORTHO05D004803 9.3e-24 115.5 347 25.9
Sabra19G0097800 Salix brachista HOM05D003913 ORTHO05D004803 1.2e-23 115.2 398 58.0
COL.COLO4_13734 Corchorus olitorius HOM05D003913 ORTHO05D004803 1.6e-23 114.8 334 35.0
Actinidia33168 Actinidia chinensis HOM05D003898 ORTHO05D004642 2.1e-23 114.4 110 52.7
Peaxi162Scf01838g00003 Petunia axillaris HOM05D000173 ORTHO05D000316 2.1e-23 114.4 114 54.4
SMO343G0013 Selaginella moellendorffii HOM05D003913 ORTHO05D004803 3.5e-23 113.6 116 44.8
TAR381G0993 Trochodendron aralioides HOM05D003913 ORTHO05D004803 3.5e-23 113.6 107 56.1
MBI10_g41322_MAGBIO Magnolia biondii HOM05D003913 ORTHO05D004803 6.0e-23 112.8 114 53.5
AUR62001664 Chenopodium quinoa HOM05D003913 ORTHO05D004803 3.9e-22 110.2 341 25.5
Eucgr.E02330 Eucalyptus grandis HOM05D003913 ORTHO05D004803 5.1e-22 109.8 114 49.1
AUR62024845 Chenopodium quinoa HOM05D003913 ORTHO05D004803 6.7e-22 109.4 393 25.2
CANSAT11G1897 Cannabis sativa HOM05D003913 ORTHO05D004803 8.7e-22 109.0 105 56.2
CBR_g49506 Chara braunii HOM05D003913 ORTHO05D004803 1.1e-21 108.6 394 56.6
Cpa.g.sc2399.1 Carica papaya HOM05D003913 ORTHO05D004803 1.5e-21 108.2 108 55.6
Rhsim06G0087400 Rhododendron simsii HOM05D003913 ORTHO05D004803 1.3e-20 105.1 479 50.1
Glyma.10G218600 Glycine max HOM05D003913 ORTHO05D004803 2.1e-20 104.4 114 48.2
Psat6g019720 Pisum sativum HOM05D003913 ORTHO05D004803 6.2e-20 102.8 114 49.1
CARHR124080 Cardamine hirsuta HOM05D003913 ORTHO05D004803 1.4e-19 101.7 376 25.0
Psat6g021120 Pisum sativum HOM05D003913 ORTHO05D004803 5.3e-19 99.8 119 39.5
Cre12.g487200 Chlamydomonas reinhardtii HOM05D003913 ORTHO05D004803 1.2e-18 98.6 417 26.6
Glyma.10G218500 Glycine max HOM05D003913 ORTHO05D004803 1.5e-18 98.2 121 36.4
Glyma.09G057500 Glycine max HOM05D003913 ORTHO05D004803 2.2e-17 94.4 124 37.9
Haze_17883 Corylus avellana HOM05D003913 ORTHO05D004803 1.2e-15 88.6 111 47.7
Hma1.2p1_0276F.1_g111310 Hydrangea macrophylla HOM05D003913 ORTHO05D004803 7.9e-15 85.9 122 41.8
BolC6t38649H Brassica oleracea HOM05D003913 ORTHO05D004803 7.4e-13 79.3 111 37.8
PSO455G0073 Papaver somniferum HOM05D003913 ORTHO05D004803 1.3e-12 78.6 66 59.1
Medtr7g079470 Medicago truncatula HOM05D003913 ORTHO05D004803 8.2e-12 75.9 67 53.7
vmacro21210 Vaccinium macrocarpon HOM05D003913 ORTHO05D004803 8.2e-12 75.9 139 40.3
Lj4C56G20 Lonicera japonica HOM05D003913 ORTHO05D004803 2.4e-11 74.3 61 57.4
Medtr7g111550 Medicago truncatula HOM05D003913 ORTHO05D004803 2.4e-11 74.3 103 34.0
MCO10G384 Micromonas commoda HOM05D003913 ORTHO05D004803 3.1e-11 73.9 377 36.6
Thecc.09G236800 Theobroma cacao HOM05D003913 ORTHO05D004803 6.9e-11 72.8 53 60.4
SHI13909 Sapria himalayana HOM05D003913 ORTHO05D004803 1.0e-09 68.9 96 46.9
A02p17440 Brassica napus HOM05D003913 ORTHO05D004803 2.3e-06 57.8 43 60.5
Cpa.g.sc66.118 Carica papaya HOM05D003913 ORTHO05D004411 3.9e-06 57.0 68 42.6
Glyma.17G173200 Glycine max HOM05D003913 ORTHO05D004803 3.9e-06 57.0 40 57.5


User provided reference genes

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