Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_39026 Sequoiadendron giganteum HOM05D006086 ORTHO05D007396 1.7e-34 148.7 70 100.0
SEGI_00264 Sequoiadendron giganteum HOM05D006086 ORTHO05D007396 2.6e-11 71.6 64 56.2
Cc03_g03710 Coffea canephora HOM05D006086 ORTHO05D007396 3.2e-09 64.7 44 68.2
HanXRQChr15g0492031 Helianthus annuus HOM05D006086 ORTHO05D007396 3.2e-09 64.7 46 63.0
Lsat_1_v5_gn_7_65621 Lactuca sativa HOM05D006086 ORTHO05D007396 4.2e-09 64.3 58 55.2
EL10Ac3g06420 Beta vulgaris HOM05D006086 ORTHO05D007396 5.5e-09 63.9 55 56.4
TAR636G0808 Trochodendron aralioides HOM05D006086 ORTHO05D007396 1.2e-08 62.8 37 75.7
ECA240G3083 Erigeron canadensis HOM05D006086 ORTHO05D007396 1.6e-08 62.4 46 60.9
MD16G1192800 Malus domestica HOM05D006086 ORTHO05D007396 1.6e-08 62.4 52 61.5
DCAR_030633 Daucus carota HOM05D006086 ORTHO05D007396 2.1e-08 62.0 37 75.7
Dinv44531 Davidia involucrata HOM05D006086 ORTHO05D007396 2.7e-08 61.6 45 64.4
Hma1.2p1_3079F.1_g332420 Hydrangea macrophylla HOM05D006086 ORTHO05D007396 2.7e-08 61.6 37 75.7
Zm00001eb107360 Zea mays HOM05D006086 ORTHO05D007396 3.6e-08 61.2 48 58.3
Glyma.01G238500 Glycine max HOM05D006086 ORTHO05D007396 6.1e-08 60.5 44 61.4
ATR0737G002 Amborella trichopoda HOM05D006086 ORTHO05D007396 8.0e-08 60.1 58 53.4
DCAR_027212 Daucus carota HOM05D006086 ORTHO05D007396 8.0e-08 60.1 62 53.2
Glyma.11G005000 Glycine max HOM05D006086 ORTHO05D007396 8.0e-08 60.1 44 59.1
Oeu011629.1 Olea europaea HOM05D006086 ORTHO05D007396 8.0e-08 60.1 37 73.0
Oeu023395.1 Olea europaea HOM05D006086 ORTHO05D007396 8.0e-08 60.1 37 73.0
SalBow2G3603 Salvia bowleyana HOM05D006086 ORTHO05D007396 8.0e-08 60.1 53 60.4
FvH4_4g15440 Fragaria vesca HOM05D006086 ORTHO05D007396 1.0e-07 59.7 48 60.4
FAN12G3621 Fragaria x ananassa HOM05D006086 ORTHO05D007396 1.0e-07 59.7 48 60.4
FAN17G2927 Fragaria x ananassa HOM05D006086 ORTHO05D007396 1.0e-07 59.7 48 60.4
FAN22G1306 Fragaria x ananassa HOM05D006086 ORTHO05D007396 1.0e-07 59.7 48 60.4
Lalb_Chr05g0210971 Lupinus albus HOM05D006086 ORTHO05D007396 1.0e-07 59.7 37 70.3
RcHm_v2.0_Chr4g0416351 Rosa chinensis HOM05D006086 ORTHO05D007396 1.0e-07 59.7 48 60.4
GSVIVG01017965001 Vitis vinifera HOM05D006086 ORTHO05D007396 1.0e-07 59.7 44 61.4
Potri.010G088200 Populus trichocarpa HOM05D006086 ORTHO05D007396 1.4e-07 59.3 45 60.0
Thecc.04G230800 Theobroma cacao HOM05D006086 ORTHO05D007396 1.4e-07 59.3 45 60.0
Carub.0003s2258 Capsella rubella HOM05D006086 ORTHO05D007396 2.3e-07 58.5 44 61.4
Oeu031234.1 Olea europaea HOM05D006086 ORTHO05D007396 2.3e-07 58.5 37 67.6
BraA01t03396Z Brassica rapa HOM05D006086 ORTHO05D007396 3.0e-07 58.2 37 70.3
CiPaw.01G165300 Carya illinoinensis HOM05D006086 ORTHO05D007396 3.0e-07 58.2 45 57.8
Migut.G00335 Erythranthe guttata HOM05D006086 ORTHO05D007396 4.0e-07 57.8 37 67.6
MD02G1003000 Malus domestica HOM05D006086 ORTHO05D007396 4.0e-07 57.8 55 52.7
Phvul.002G045900 Phaseolus vulgaris HOM05D006086 ORTHO05D007396 4.0e-07 57.8 53 54.7
SEGI_12043 Sequoiadendron giganteum HOM05D006086 ORTHO05D007396 4.0e-07 57.8 67 40.3
MD15G1146200 Malus domestica HOM05D006086 ORTHO05D007396 5.2e-07 57.4 44 59.1
Prupe.1G012900 Prunus persica HOM05D006086 ORTHO05D007396 5.2e-07 57.4 57 54.4
CSS0045022 Camellia sinensis var. sinensis HOM05D006086 ORTHO05D007396 6.7e-07 57.0 45 62.2
Manes.15G028500 Manihot esculenta HOM05D006086 ORTHO05D007396 6.7e-07 57.0 45 57.8
Atru.ctg752_3.89 Acer truncatum HOM05D006086 ORTHO05D007396 8.8e-07 56.6 49 57.1
Lj5g0007110 Lotus japonicus HOM05D006086 ORTHO05D007396 8.8e-07 56.6 41 61.0
Potri.008G152200 Populus trichocarpa HOM05D006086 ORTHO05D007396 8.8e-07 56.6 44 59.1
A01p32670 Brassica napus HOM05D006086 ORTHO05D007396 1.2e-06 56.2 37 67.6
C01p41850 Brassica napus HOM05D006086 ORTHO05D007396 1.2e-06 56.2 37 67.6
BolC1t04139H Brassica oleracea HOM05D006086 ORTHO05D007396 1.2e-06 56.2 37 67.6
TAR633G0013 Trochodendron aralioides HOM05D006086 ORTHO05D007396 1.2e-06 56.2 37 67.6
GSVIVG01021842001 Vitis vinifera HOM05D006086 ORTHO05D007396 1.2e-06 56.2 45 55.6
arahy.Tifrunner.gnm1.ann1.NA8V5S Arachis hypogaea HOM05D006086 ORTHO05D007396 1.5e-06 55.8 54 51.9
CARHR098310 Cardamine hirsuta HOM05D006086 ORTHO05D007396 1.5e-06 55.8 37 70.3
Glyma.03G155400 Glycine max HOM05D006086 ORTHO05D007396 1.5e-06 55.8 58 51.7
Glyma.10G248500 Glycine max HOM05D006086 ORTHO05D007396 1.5e-06 55.8 37 67.6
Glyma.19G157600 Glycine max HOM05D006086 ORTHO05D007396 1.5e-06 55.8 58 51.7
Glyma.20G145600 Glycine max HOM05D006086 ORTHO05D007396 1.5e-06 55.8 37 67.6
Nn1g02292 Nelumbo nucifera HOM05D006086 ORTHO05D007396 1.5e-06 55.8 44 56.8
Prupe.7G268200 Prunus persica HOM05D006086 ORTHO05D007396 1.5e-06 55.8 47 57.4
AL3G36690 Arabidopsis lyrata HOM05D006086 ORTHO05D007396 2.0e-06 55.5 44 59.1
arahy.Tifrunner.gnm1.ann1.K13GF2 Arachis hypogaea HOM05D006086 ORTHO05D007396 2.0e-06 55.5 54 51.9
A05p26350 Brassica napus HOM05D006086 ORTHO05D007396 2.0e-06 55.5 37 67.6
BraA05t21510Z Brassica rapa HOM05D006086 ORTHO05D007396 2.0e-06 55.5 37 67.6
Lalb_Chr23g0273411 Lupinus albus HOM05D006086 ORTHO05D007396 2.0e-06 55.5 38 63.2
Os07g0572400 Oryza sativa ssp. japonica HOM05D006086 ORTHO05D007396 2.6e-06 55.1 39 61.5
Gohir.A09G215300 Gossypium hirsutum HOM05D006086 ORTHO05D007396 3.3e-06 54.7 45 55.6
Gohir.D09G217800 Gossypium hirsutum HOM05D006086 ORTHO05D007396 3.3e-06 54.7 45 55.6
Lj1g0005264 Lotus japonicus HOM05D006086 ORTHO05D007396 3.3e-06 54.7 58 50.0
Medtr1g104520 Medicago truncatula HOM05D006086 ORTHO05D007396 3.3e-06 54.7 34 67.6
Phvul.007G056800 Phaseolus vulgaris HOM05D006086 ORTHO05D007396 3.3e-06 54.7 36 66.7
Potri.005G211000 Populus trichocarpa HOM05D006086 ORTHO05D007396 3.3e-06 54.7 37 62.2
Thecc.05G288200 Theobroma cacao HOM05D006086 ORTHO05D007396 3.3e-06 54.7 44 59.1
arahy.Tifrunner.gnm1.ann1.GC569L Arachis hypogaea HOM05D006086 ORTHO05D007396 4.4e-06 54.3 27 85.2
arahy.Tifrunner.gnm1.ann1.I5363L Arachis hypogaea HOM05D006086 ORTHO05D007396 4.4e-06 54.3 27 85.2
MD13G1192200 Malus domestica HOM05D006086 ORTHO05D007396 4.4e-06 54.3 58 53.4
Sed0021654 Sechium edule HOM05D006086 ORTHO05D007396 4.4e-06 54.3 49 57.1
BolC3t17520H Brassica oleracea HOM05D006086 ORTHO05D007396 5.7e-06 53.9 44 54.5
CsaV3_3G013360 Cucumis sativus L. HOM05D006086 ORTHO05D007396 5.7e-06 53.9 47 57.4
Gorai.006G238700 Gossypium raimondii HOM05D006086 ORTHO05D007396 5.7e-06 53.9 38 63.2
Nn4g26304 Nelumbo nucifera HOM05D006086 ORTHO05D007396 5.7e-06 53.9 43 55.8
BraA03t13422Z Brassica rapa HOM05D006086 ORTHO05D007396 7.5e-06 53.5 37 67.6
Gohir.A11G255000 Gossypium hirsutum HOM05D006086 ORTHO05D007396 7.5e-06 53.5 44 59.1
Gohir.D11G264700 Gossypium hirsutum HOM05D006086 ORTHO05D007396 7.5e-06 53.5 44 59.1
Gorai.007G284800 Gossypium raimondii HOM05D006086 ORTHO05D007396 7.5e-06 53.5 44 59.1
Oeu034961.1 Olea europaea HOM05D006086 ORTHO05D007396 7.5e-06 53.5 38 60.5
Os01g0778500 Oryza sativa ssp. japonica HOM05D006086 ORTHO05D007396 7.5e-06 53.5 47 55.3
Psat4g210480 Pisum sativum HOM05D006086 ORTHO05D007396 7.5e-06 53.5 67 40.3
HPP92_015928 Vanilla planifolia HOM05D006086 ORTHO05D007396 7.5e-06 53.5 37 64.9
Gohir.A02G031700 Gossypium hirsutum HOM05D006086 ORTHO05D007396 9.7e-06 53.1 45 53.3
Gohir.D02G038400 Gossypium hirsutum HOM05D006086 ORTHO05D007396 9.7e-06 53.1 45 53.3
Gorai.005G042300 Gossypium raimondii HOM05D006086 ORTHO05D007396 9.7e-06 53.1 45 53.3
Sed0006679 Sechium edule HOM05D006086 ORTHO05D007396 9.7e-06 53.1 40 65.0
Zm00001eb151540 Zea mays HOM05D006086 ORTHO05D007396 9.7e-06 53.1 53 52.8


User provided reference genes

Program Settings