Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_38974 Sequoiadendron giganteum HOM05D003511 ORTHO05D004403 9.9e-266 919.5 433 100.0
Prupe.8G137300 Prunus persica HOM05D003511 ORTHO05D004403 5.0e-161 571.6 371 69.0
Nn5g30453 Nelumbo nucifera HOM05D003511 ORTHO05D004403 6.6e-161 571.2 371 69.0
Aqoxy6G02835 Aquilegia oxysepala HOM05D003511 ORTHO05D004403 1.6e-159 566.6 376 66.8
Dinv42203 Davidia involucrata HOM05D003511 ORTHO05D004403 1.6e-159 566.6 374 67.4
Hma1.2p1_1518F.1_g288460 Hydrangea macrophylla HOM05D003511 ORTHO05D004403 1.6e-159 566.6 371 68.5
Hma1.2p1_1518F.1_g288470 Hydrangea macrophylla HOM05D003511 ORTHO05D004403 2.1e-159 566.2 371 67.7
Potri.001G299000 Populus trichocarpa HOM05D003511 ORTHO05D004403 8.0e-159 564.3 374 67.9
GSVIVG01037900001 Vitis vinifera HOM05D003511 ORTHO05D004403 1.4e-158 563.5 374 66.8
Thecc.02G110900 Theobroma cacao HOM05D003511 ORTHO05D004403 1.8e-158 563.1 374 67.6
QL11p032729 Quercus lobata HOM05D003511 ORTHO05D004403 8.9e-158 560.8 374 67.1
Duzib052G0193 Durio zibethinus HOM05D003511 ORTHO05D004403 1.2e-157 560.5 374 67.1
Cfa004603 Carpinus fangiana HOM05D003511 ORTHO05D004403 3.4e-157 558.9 374 67.1
Manes.10G075800 Manihot esculenta HOM05D003511 ORTHO05D004403 9.8e-157 557.4 374 66.6
RcHm_v2.0_Chr6g0254541 Rosa chinensis HOM05D003511 ORTHO05D004403 1.7e-156 556.6 374 66.3
Lj5A215G58 Lonicera japonica HOM05D003511 ORTHO05D004403 2.9e-156 555.8 375 66.4
CiPaw.05G013100 Carya illinoinensis HOM05D003511 ORTHO05D004403 3.7e-156 555.4 374 66.3
Ciclev10027816m.g Citrus clementina HOM05D003511 ORTHO05D004403 3.7e-156 555.4 374 65.0
DCAR_001655 Daucus carota HOM05D003511 ORTHO05D004403 3.7e-156 555.4 369 67.2
FAN27G0709 Fragaria x ananassa HOM05D003511 ORTHO05D004403 6.4e-156 554.7 401 62.8
FAN15G2851 Fragaria x ananassa HOM05D003511 ORTHO05D004403 1.4e-155 553.5 401 62.8
FAN20G1862 Fragaria x ananassa HOM05D003511 ORTHO05D004403 2.4e-155 552.7 401 62.8
Gorai.008G022200 Gossypium raimondii HOM05D003511 ORTHO05D004403 2.4e-155 552.7 374 66.3
Actinidia34394 Actinidia chinensis HOM05D003511 ORTHO05D004403 3.2e-155 552.4 375 66.7
Gohir.D12G021900 Gossypium hirsutum HOM05D003511 ORTHO05D004403 3.2e-155 552.4 374 66.3
Ciclev10027838m.g Citrus clementina HOM05D003511 ORTHO05D004403 4.1e-155 552.0 371 67.4
Gohir.A12G021400 Gossypium hirsutum HOM05D003511 ORTHO05D004403 4.1e-155 552.0 374 66.3
Sabra09G0072200 Salix brachista HOM05D003511 ORTHO05D004403 4.1e-155 552.0 374 65.5
TWI79G1106 Tripterygium wilfordii HOM05D003511 ORTHO05D004403 5.4e-155 551.6 374 65.2
Potri.009G093900 Populus trichocarpa HOM05D003511 ORTHO05D004403 7.0e-155 551.2 374 65.5
Atru.chr5.2454 Acer truncatum HOM05D003511 ORTHO05D004403 1.2e-154 550.4 363 68.3
Rhsim11G0158000 Rhododendron simsii HOM05D003511 ORTHO05D004403 1.2e-154 550.4 374 65.8
ATR0661G369 Amborella trichopoda HOM05D003511 ORTHO05D004403 1.6e-154 550.1 377 66.0
FvH4_2g04810 Fragaria vesca HOM05D003511 ORTHO05D004403 1.6e-154 550.1 401 62.6
vmacro01992 Vaccinium macrocarpon HOM05D003511 ORTHO05D004403 1.6e-154 550.1 375 65.1
Rhsim11G0156500 Rhododendron simsii HOM05D003511 ORTHO05D004403 4.6e-154 548.5 374 65.2
CSS0033371 Camellia sinensis var. sinensis HOM05D003511 ORTHO05D004403 6.0e-154 548.1 375 66.4
Ca_11061_v3 Cicer arietinum L. HOM05D003511 ORTHO05D004403 7.8e-154 547.7 374 65.2
CiPaw.05G013200 Carya illinoinensis HOM05D003511 ORTHO05D004403 1.0e-153 547.4 374 65.0
ECA240G1815 Erigeron canadensis HOM05D003511 ORTHO05D004403 1.0e-153 547.4 380 64.2
FAN15G0970 Fragaria x ananassa HOM05D003511 ORTHO05D004403 1.3e-153 547.0 374 65.0
HanXRQChr09g0251071 Helianthus annuus HOM05D003511 ORTHO05D004403 1.7e-153 546.6 383 64.2
Nitab4.5_0003699g0020 Nicotiana tabacum HOM05D003511 ORTHO05D004403 2.3e-153 546.2 374 64.7
MD10G1099200 Malus domestica HOM05D003511 ORTHO05D004403 3.0e-153 545.8 371 65.2
ATR0205G005 Amborella trichopoda HOM05D003511 ORTHO05D004403 3.9e-153 545.4 377 66.3
Lj5C215T12 Lonicera japonica HOM05D003511 ORTHO05D004403 3.9e-153 545.4 374 64.7
Duzib132G0449 Durio zibethinus HOM05D003511 ORTHO05D004403 6.6e-153 544.7 374 65.5
Eucgr.I01093 Eucalyptus grandis HOM05D003511 ORTHO05D004403 6.6e-153 544.7 370 65.7
TWI75G1477 Tripterygium wilfordii HOM05D003511 ORTHO05D004403 1.1e-152 543.9 394 63.5
Atru.chr5.2453 Acer truncatum HOM05D003511 ORTHO05D004403 2.5e-152 542.7 371 65.8
Cfa004604 Carpinus fangiana HOM05D003511 ORTHO05D004403 3.3e-152 542.3 374 64.2
HPP92_006064 Vanilla planifolia HOM05D003511 ORTHO05D004403 5.6e-152 541.6 370 65.4
arahy.Tifrunner.gnm1.ann1.VN0KJM Arachis hypogaea HOM05D003511 ORTHO05D004403 9.5e-152 540.8 374 64.2
Potri.009G093500 Populus trichocarpa HOM05D003511 ORTHO05D004403 9.5e-152 540.8 375 64.0
Medtr1g107135 Medicago truncatula HOM05D003511 ORTHO05D004403 1.2e-151 540.4 374 64.4
CANSAT25G1711 Cannabis sativa HOM05D003511 ORTHO05D004403 1.6e-151 540.0 371 65.0
Oeu029532.2 Olea europaea HOM05D003511 ORTHO05D004403 2.1e-151 539.7 374 63.9
FAN24G0829 Fragaria x ananassa HOM05D003511 ORTHO05D004403 2.8e-151 539.3 401 61.3
PSO541G1166 Papaver somniferum HOM05D003511 ORTHO05D004403 4.7e-151 538.5 374 64.7
Nitab4.5_0001480g0130 Nicotiana tabacum HOM05D003511 ORTHO05D004403 8.1e-151 537.7 374 64.2
Haze_10199 Corylus avellana HOM05D003511 ORTHO05D004403 1.1e-150 537.3 367 64.3
FvH4_2g04870 Fragaria vesca HOM05D003511 ORTHO05D004403 1.8e-150 536.6 421 58.7
Cc02_g19400 Coffea canephora HOM05D003511 ORTHO05D004403 2.3e-150 536.2 371 65.2
Manes.10G075700 Manihot esculenta HOM05D003511 ORTHO05D004403 6.8e-150 534.6 374 63.6
DCAR_001656 Daucus carota HOM05D003511 ORTHO05D004403 8.9e-150 534.3 376 64.4
PGR142G1515 Punica granatum HOM05D003511 ORTHO05D004403 8.9e-150 534.3 373 63.5
Cpa.g.sc106.113 Carica papaya HOM05D003511 ORTHO05D004403 1.2e-149 533.9 374 64.7
Lsat_1_v5_gn_9_111920 Lactuca sativa HOM05D003511 ORTHO05D004403 1.2e-149 533.9 383 62.7
Thecc.02G111000 Theobroma cacao HOM05D003511 ORTHO05D004403 1.2e-149 533.9 376 63.3
Gorai.008G022000 Gossypium raimondii HOM05D003511 ORTHO05D004403 2.0e-149 533.1 377 63.4
FAN24G2294 Fragaria x ananassa HOM05D003511 ORTHO05D004403 4.4e-149 531.9 422 58.5
Gohir.D12G021700 Gossypium hirsutum HOM05D003511 ORTHO05D004403 4.4e-149 531.9 377 63.4
QL11p032687 Quercus lobata HOM05D003511 ORTHO05D004403 9.9e-149 530.8 370 64.9
Sabra09G0072100 Salix brachista HOM05D003511 ORTHO05D004403 9.9e-149 530.8 387 61.5
Manes.07G068400 Manihot esculenta HOM05D003511 ORTHO05D004403 1.3e-148 530.4 371 64.2
Glyma.10G260900 Glycine max HOM05D003511 ORTHO05D004403 2.2e-148 529.6 386 62.7
TPR.G19061 Trifolium pratense HOM05D003511 ORTHO05D004403 2.2e-148 529.6 375 63.2
ClCG05G010350 Citrullus lanatus HOM05D003511 ORTHO05D004403 2.9e-148 529.3 374 64.7
Lj5g0008514 Lotus japonicus HOM05D003511 ORTHO05D004403 2.9e-148 529.3 374 62.8
Rhsim10G0162400 Rhododendron simsii HOM05D003511 ORTHO05D004403 3.7e-148 528.9 445 56.0
Os10g0339600 Oryza sativa ssp. japonica HOM05D003511 ORTHO05D004403 1.1e-147 527.3 375 62.9
Rhsim10G0162100 Rhododendron simsii HOM05D003511 ORTHO05D004403 1.1e-147 527.3 389 61.7
Aa31LG2G16810 Aethionema arabicum HOM05D003511 ORTHO05D004403 1.4e-147 526.9 371 63.9
COL.COLO4_32574 Corchorus olitorius HOM05D003511 ORTHO05D004403 4.1e-147 525.4 369 63.4
CsaV3_3G018140 Cucumis sativus L. HOM05D003511 ORTHO05D004403 4.1e-147 525.4 374 63.9
Glyma.20G130366 Glycine max HOM05D003511 ORTHO05D004403 4.1e-147 525.4 386 61.7
Oeu013759.1 Olea europaea HOM05D003511 ORTHO05D004403 5.4e-147 525.0 373 62.5
Hund00157 Selenicereus undatus HOM05D003511 ORTHO05D004403 7.1e-147 524.6 375 64.0
Gohir.A12G021350 Gossypium hirsutum HOM05D003511 ORTHO05D004403 9.2e-147 524.2 377 62.9
MSTRG.20193 Avicennia marina HOM05D003511 ORTHO05D004403 1.2e-146 523.9 371 63.1
EL10Ac9g22257 Beta vulgaris HOM05D003511 ORTHO05D004403 1.6e-146 523.5 368 63.9
Eucgr.I01092 Eucalyptus grandis HOM05D003511 ORTHO05D004403 1.6e-146 523.5 374 63.9
Glyma.20G130432 Glycine max HOM05D003511 ORTHO05D004403 1.3e-145 520.4 386 61.1
Sed0017826 Sechium edule HOM05D003511 ORTHO05D004403 2.3e-145 519.6 374 63.4
COL.COLO4_32573 Corchorus olitorius HOM05D003511 ORTHO05D004403 6.6e-145 518.1 332 69.3
Sabra16G0187500 Salix brachista HOM05D003511 ORTHO05D004403 8.6e-145 517.7 377 61.5
AUR62039058 Chenopodium quinoa HOM05D003511 ORTHO05D004403 1.9e-144 516.5 371 63.6
Eucgr.I01091 Eucalyptus grandis HOM05D003511 ORTHO05D004403 2.5e-144 516.2 374 62.3
AUR62010328 Chenopodium quinoa HOM05D003511 ORTHO05D004403 7.3e-144 514.6 371 63.9
Lalb_Chr06g0165351 Lupinus albus HOM05D003511 ORTHO05D004403 9.5e-144 514.2 375 61.1
Hund06308 Selenicereus undatus HOM05D003511 ORTHO05D004403 9.5e-144 514.2 373 63.5
HanXRQChr10g0296941 Helianthus annuus HOM05D003511 ORTHO05D004403 3.6e-143 512.3 377 61.3
AUR62010329 Chenopodium quinoa HOM05D003511 ORTHO05D004403 4.7e-143 511.9 374 62.3
Phvul.007G041400 Phaseolus vulgaris HOM05D003511 ORTHO05D004403 6.2e-143 511.5 377 61.8
Sc08g0001330 Simmondsia chinensis HOM05D003511 ORTHO05D004403 8.1e-143 511.1 374 62.0
Thhalv10024398m.g Eutrema salsugineum HOM05D003511 ORTHO05D004403 1.4e-142 510.4 371 61.7
SalBow6G6056 Salvia bowleyana HOM05D003511 ORTHO05D004403 1.8e-142 510.0 376 61.4
Migut.B00398 Erythranthe guttata HOM05D003511 ORTHO05D004403 3.1e-142 509.2 376 60.9
AUR62039057 Chenopodium quinoa HOM05D003511 ORTHO05D004403 4.0e-142 508.8 374 62.0
DCAR_029092 Daucus carota HOM05D003511 ORTHO05D004403 4.0e-142 508.8 371 63.9
C01p04540 Brassica napus HOM05D003511 ORTHO05D004403 1.2e-141 507.3 371 62.0
BolC1t00439H Brassica oleracea HOM05D003511 ORTHO05D004403 1.2e-141 507.3 371 62.0
BcaNung04986 Brassica carinata HOM05D003511 ORTHO05D004403 2.0e-141 506.5 371 62.0
BraA01t00406Z Brassica rapa HOM05D003511 ORTHO05D004403 2.0e-141 506.5 371 62.0
Duzib248G0534 Durio zibethinus HOM05D003511 ORTHO05D004403 2.0e-141 506.5 345 64.6
THA.LOC104819550 Tarenaya hassleriana HOM05D003511 ORTHO05D004403 2.6e-141 506.1 371 61.5
A01p04170 Brassica napus HOM05D003511 ORTHO05D004403 3.4e-141 505.8 371 62.0
Lsat_1_v5_gn_5_116360 Lactuca sativa HOM05D003511 ORTHO05D004403 4.4e-141 505.4 379 60.2
arahy.Tifrunner.gnm1.ann1.LFSR1E Arachis hypogaea HOM05D003511 ORTHO05D004403 1.3e-140 503.8 367 63.8
BcaNung04164 Brassica carinata HOM05D003511 ORTHO05D004403 6.4e-140 501.5 371 61.5
Sp7g32040 Schrenkiella parvula HOM05D003511 ORTHO05D004403 6.4e-140 501.5 370 61.1
Atru.chr5.2456 Acer truncatum HOM05D003511 ORTHO05D004403 8.4e-140 501.1 375 62.1
Carub.0007s0611 Capsella rubella HOM05D003511 ORTHO05D004403 8.4e-140 501.1 371 61.2
AT4G34260 Arabidopsis thaliana HOM05D003511 ORTHO05D004403 1.1e-139 500.7 371 61.2
Phvul.002G053000 Phaseolus vulgaris HOM05D003511 ORTHO05D004403 1.4e-139 500.4 376 59.6
AL7G17030 Arabidopsis lyrata HOM05D003511 ORTHO05D004403 7.1e-139 498.0 371 60.4
Os10g0339290 Oryza sativa ssp. japonica HOM05D003511 ORTHO05D004403 7.1e-139 498.0 375 61.9
VMungo1215G0806 Vigna mungo HOM05D003511 ORTHO05D004403 7.1e-139 498.0 376 59.3
VMungo0720G0159 Vigna mungo HOM05D003511 ORTHO05D004403 2.1e-138 496.5 347 64.0
CARHR242530 Cardamine hirsuta HOM05D003511 ORTHO05D004403 3.5e-138 495.7 371 60.6
Glyma.01G243600 Glycine max HOM05D003511 ORTHO05D004403 7.8e-138 494.6 385 58.2
PGR142G0041 Punica granatum HOM05D003511 ORTHO05D004403 2.1e-135 486.5 373 57.9
CDE06G2550 Ceratophyllum demersum HOM05D003511 ORTHO05D004403 2.8e-135 486.1 370 59.5
Pp3c19_10350 Physcomitrium patens HOM05D003511 ORTHO05D004403 2.4e-134 483.0 392 56.9
ECA234G0109 Erigeron canadensis HOM05D003511 ORTHO05D004403 9.0e-134 481.1 318 67.3
Peaxi162Scf00152g00326 Petunia axillaris HOM05D003511 ORTHO05D004403 1.3e-132 477.2 374 58.6
MBI16_g09476_MAGBIO Magnolia biondii HOM05D003511 ORTHO05D004403 1.1e-126 457.6 318 66.0
TPR.G19062 Trifolium pratense HOM05D003511 ORTHO05D004403 1.5e-125 453.8 374 56.4
Mapoly0115s0027 Marchantia polymorpha HOM05D003511 ORTHO05D004403 5.8e-125 451.8 376 55.9
SMO116G0225 Selaginella moellendorffii HOM05D003511 ORTHO05D004403 9.9e-125 451.1 359 58.2
Sabra16G0187700 Salix brachista HOM05D003511 ORTHO05D004403 2.9e-124 449.5 283 70.0
CSS0003612 Camellia sinensis var. sinensis HOM05D003511 ORTHO05D004403 1.3e-119 434.1 280 68.2
CSS0042293 Camellia sinensis var. sinensis HOM05D003511 ORTHO05D004403 3.7e-119 432.6 280 67.9
Lj5C215G13 Lonicera japonica HOM05D003511 ORTHO05D004403 1.1e-118 431.0 374 55.6
CSS0035504 Camellia sinensis var. sinensis HOM05D003511 ORTHO05D004403 4.0e-118 429.1 280 68.9
vmacro02524 Vaccinium macrocarpon HOM05D003511 ORTHO05D004403 5.3e-118 428.7 274 67.9
Potri.001G298900 Populus trichocarpa HOM05D003511 ORTHO05D004403 4.2e-115 419.1 275 66.9
SEGI_24031 Sequoiadendron giganteum HOM05D003511 ORTHO05D004403 7.9e-106 388.3 207 89.9
Peaxi162Scf00016g02427 Petunia axillaris HOM05D003511 ORTHO05D004403 1.0e-105 387.9 371 51.8
Medtr4g127370 Medicago truncatula HOM05D003511 ORTHO05D004403 2.6e-101 373.2 260 63.1
Dinv15773 Davidia involucrata HOM05D003511 ORTHO05D004403 1.1e-88 331.3 209 68.4
TAR381G0671 Trochodendron aralioides HOM05D003511 ORTHO05D004403 1.1e-88 331.3 215 68.8
AagrBONN_evm.TU.Sc2ySwM_344.4246 Anthoceros agrestis HOM05D003511 ORTHO05D004403 4.8e-87 325.9 365 47.9
Zm00001eb027590 Zea mays HOM05D003511 ORTHO05D004403 2.4e-86 323.6 209 66.5
MD10G1099400 Malus domestica HOM05D003511 ORTHO05D004403 2.5e-83 313.5 209 65.1
Psat6g217200 Pisum sativum HOM05D003511 ORTHO05D004403 1.4e-81 307.8 209 65.6
Atru.chr5.2448 Acer truncatum HOM05D003511 ORTHO05D004403 1.3e-76 291.2 334 46.4
Sed0023024 Sechium edule HOM05D003511 ORTHO05D004403 1.8e-62 244.2 163 65.6
MELO3C019553.2 Cucumis melo HOM05D003511 ORTHO05D004403 2.0e-61 240.7 163 63.8
TAR381G0463 Trochodendron aralioides HOM05D003511 ORTHO05D004403 4.7e-50 203.0 123 69.9
MD10G1099600 Malus domestica HOM05D003511 ORTHO05D022111 7.5e-48 195.7 136 66.9
Ah.01g010970 Amaranthus hybridus HOM05D003511 ORTHO05D004403 1.5e-40 171.4 118 62.7
AagrBONN_evm.TU.Sc2ySwM_344.4259 Anthoceros agrestis HOM05D003511 ORTHO05D004403 5.4e-38 162.9 187 43.9
TPR.G13230 Trifolium pratense HOM05D003511 ORTHO05D004403 5.1e-28 129.8 99 60.6
vmacro02525 Vaccinium macrocarpon HOM05D003511 ORTHO05D022111 4.2e-22 110.2 101 48.5
CSS0007308 Camellia sinensis var. sinensis HOM05D003511 ORTHO05D022111 2.7e-21 107.5 96 53.1
CSS0020018 Camellia sinensis var. sinensis HOM05D003511 ORTHO05D022111 4.6e-21 106.7 94 54.3
MBI16_g33969_MAGBIO Magnolia biondii HOM05D003511 ORTHO05D004403 6.0e-21 106.3 54 75.9
MBI16_g16349_MAGBIO Magnolia biondii HOM05D003511 ORTHO05D004403 7.8e-21 105.9 54 75.9
CSS0026771 Camellia sinensis var. sinensis HOM05D003511 ORTHO05D022111 1.3e-20 105.1 94 54.3
TAR365G0577 Trochodendron aralioides HOM05D003511 ORTHO05D416054 8.1e-18 95.9 72 59.7
Lsat_1_v5_gn_5_116340 Lactuca sativa HOM05D003511 ORTHO05D004403 2.4e-17 94.4 108 40.7
Glyma.04G111966 Glycine max HOM05D003511 ORTHO05D004403 1.4e-14 85.1 41 80.5
FAN24G3426 Fragaria x ananassa HOM05D003511 ORTHO05D022111 2.4e-14 84.3 115 43.5
TPR.G4920 Trifolium pratense HOM05D000048 ORTHO05D000207 2.1e-10 71.2 64 56.2
Glyma.10G260750 Glycine max HOM05D003511 ORTHO05D004403 9.9e-08 62.4 89 42.7


User provided reference genes

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