Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_38936 Sequoiadendron giganteum HOM05D004308 ORTHO05D005139 2.9e-202 708.4 367 100.0
Lalb_Chr05g0219691 Lupinus albus HOM05D004308 ORTHO05D005139 3.3e-89 332.8 367 49.9
QL01p008001 Quercus lobata HOM05D004308 ORTHO05D005139 7.4e-89 331.6 366 50.0
PSO782G3227 Papaver somniferum HOM05D004308 ORTHO05D005139 1.3e-88 330.9 371 50.1
Aqoxy7G00472 Aquilegia oxysepala HOM05D004308 ORTHO05D005139 3.7e-88 329.3 367 49.0
VMungo0251G2308 Vigna mungo HOM05D004308 ORTHO05D005139 3.7e-88 329.3 369 48.8
Lj3g0012221 Lotus japonicus HOM05D004308 ORTHO05D005139 6.3e-88 328.6 367 49.6
TWI32G0511 Tripterygium wilfordii HOM05D004308 ORTHO05D005139 8.2e-88 328.2 368 48.9
GSVIVG01025407001 Vitis vinifera HOM05D004308 ORTHO05D005139 1.1e-87 327.8 367 48.0
Dinv13431 Davidia involucrata HOM05D004308 ORTHO05D005139 1.4e-87 327.4 367 49.0
Glyma.07G221600 Glycine max HOM05D004308 ORTHO05D005139 1.8e-87 327.0 367 48.0
Ciclev10015009m.g Citrus clementina HOM05D004308 ORTHO05D005139 7.0e-87 325.1 367 49.3
LjContig00141g0028139 Lotus japonicus HOM05D004308 ORTHO05D005139 1.2e-86 324.3 367 48.5
MBI13_g29631_MAGBIO Magnolia biondii HOM05D004308 ORTHO05D005139 4.5e-86 322.4 375 48.0
arahy.Tifrunner.gnm1.ann1.6VJH5B Arachis hypogaea HOM05D004308 ORTHO05D005139 7.7e-86 321.6 368 48.9
Phvul.009G191800 Phaseolus vulgaris HOM05D004308 ORTHO05D005139 7.7e-86 321.6 369 48.2
Thhalv10007452m.g Eutrema salsugineum HOM05D004308 ORTHO05D005139 1.3e-85 320.9 367 49.0
ClCG08G005760 Citrullus lanatus HOM05D004308 ORTHO05D005139 1.7e-85 320.5 368 48.1
Medtr4g084070 Medicago truncatula HOM05D004308 ORTHO05D005139 1.7e-85 320.5 368 48.6
Aa31LG1G2850 Aethionema arabicum HOM05D004308 ORTHO05D005139 3.8e-85 319.3 367 48.0
ECA238G0198 Erigeron canadensis HOM05D004308 ORTHO05D005139 5.0e-85 318.9 367 50.1
Potri.003G216900 Populus trichocarpa HOM05D004308 ORTHO05D005139 5.0e-85 318.9 372 48.9
Sed0009913 Sechium edule HOM05D004308 ORTHO05D005139 1.5e-84 317.4 369 49.1
CSS0019756 Camellia sinensis var. sinensis HOM05D004308 ORTHO05D005139 1.9e-84 317.0 367 48.5
Prupe.6G010000 Prunus persica HOM05D004308 ORTHO05D005139 3.2e-84 316.2 367 49.0
Sp1g10500 Schrenkiella parvula HOM05D004308 ORTHO05D005139 3.2e-84 316.2 367 47.7
C08p15000 Brassica napus HOM05D004308 ORTHO05D005139 5.5e-84 315.5 367 47.4
BolC8t49130H Brassica oleracea HOM05D004308 ORTHO05D005139 5.5e-84 315.5 367 47.4
TPR.G20984 Trifolium pratense HOM05D004308 ORTHO05D005139 5.5e-84 315.5 367 47.4
ClCG01G010120 Citrullus lanatus HOM05D004308 ORTHO05D005139 7.2e-84 315.1 369 48.0
THA.LOC104811063 Tarenaya hassleriana HOM05D004308 ORTHO05D005139 7.2e-84 315.1 368 48.4
MELO3C015647.2 Cucumis melo HOM05D004308 ORTHO05D005139 1.2e-83 314.3 367 48.8
Gorai.011G002800 Gossypium raimondii HOM05D004308 ORTHO05D005139 1.2e-83 314.3 367 48.5
BcaB03g13224 Brassica carinata HOM05D004308 ORTHO05D005139 1.6e-83 313.9 366 47.5
CiPaw.13G173300 Carya illinoinensis HOM05D004308 ORTHO05D005139 2.1e-83 313.5 367 48.5
Carub.0001s1154 Capsella rubella HOM05D004308 ORTHO05D005139 3.6e-83 312.8 367 48.5
A08p33180 Brassica napus HOM05D004308 ORTHO05D005139 4.7e-83 312.4 367 46.9
BraA08t35236Z Brassica rapa HOM05D004308 ORTHO05D005139 4.7e-83 312.4 367 46.9
Gohir.D10G002400 Gossypium hirsutum HOM05D004308 ORTHO05D005139 4.7e-83 312.4 367 48.2
Lj9C99G0 Lonicera japonica HOM05D004308 ORTHO05D005139 4.7e-83 312.4 368 48.4
Atru.chr1.4126 Acer truncatum HOM05D004308 ORTHO05D005139 6.1e-83 312.0 367 48.0
MD03G1008000 Malus domestica HOM05D004308 ORTHO05D005139 8.0e-83 311.6 367 49.0
TAR369G0492 Trochodendron aralioides HOM05D004308 ORTHO05D005139 8.0e-83 311.6 370 48.9
Duzib177G0548 Durio zibethinus HOM05D004308 ORTHO05D005139 1.0e-82 311.2 367 48.8
RcHm_v2.0_Chr5g0081551 Rosa chinensis HOM05D004308 ORTHO05D005139 1.0e-82 311.2 371 47.2
Thecc.09G212800 Theobroma cacao HOM05D004308 ORTHO05D005139 1.8e-82 310.5 367 47.7
CiPaw.13G173400 Carya illinoinensis HOM05D004308 ORTHO05D005139 2.3e-82 310.1 367 48.0
MD12G1151800 Malus domestica HOM05D004308 ORTHO05D005139 2.3e-82 310.1 367 47.7
Hund21645 Selenicereus undatus HOM05D004308 ORTHO05D005139 3.0e-82 309.7 367 48.5
AT1G11880 Arabidopsis thaliana HOM05D004308 ORTHO05D005139 1.5e-81 307.4 361 46.3
Pp3c10_8190 Physcomitrium patens HOM05D004308 ORTHO05D005139 2.6e-81 306.6 373 49.1
AUR62000023 Chenopodium quinoa HOM05D004308 ORTHO05D005139 3.3e-81 306.2 371 47.4
FvH4_3g44841 Fragaria vesca HOM05D004308 ORTHO05D005139 3.3e-81 306.2 367 46.6
AL1G23050 Arabidopsis lyrata HOM05D004308 ORTHO05D005139 4.4e-81 305.8 378 46.6
A09p64290 Brassica napus HOM05D004308 ORTHO05D005139 4.4e-81 305.8 367 46.6
BraA09t41772Z Brassica rapa HOM05D004308 ORTHO05D005139 4.4e-81 305.8 367 46.6
Mapoly0040s0060 Marchantia polymorpha HOM05D004308 ORTHO05D005139 1.3e-80 304.3 367 48.5
Ah.06g193030 Amaranthus hybridus HOM05D004308 ORTHO05D005139 2.2e-80 303.5 369 47.7
CANSAT78G0795 Cannabis sativa HOM05D004308 ORTHO05D005139 2.8e-80 303.1 367 48.5
Actinidia06853 Actinidia chinensis HOM05D004308 ORTHO05D005139 3.7e-80 302.8 367 47.7
CDE05G0081 Ceratophyllum demersum HOM05D004269 ORTHO05D007106 3.7e-80 302.8 345 50.7
BolC8t52327H Brassica oleracea HOM05D004308 ORTHO05D005139 1.4e-79 300.8 367 46.6
C08p47900 Brassica napus HOM05D004308 ORTHO05D005139 5.3e-79 298.9 367 46.9
Migut.I00336 Erythranthe guttata HOM05D004308 ORTHO05D005139 7.0e-79 298.5 370 47.0
arahy.Tifrunner.gnm1.ann1.SIQ1MV Arachis hypogaea HOM05D004308 ORTHO05D005139 3.5e-78 296.2 378 47.4
Manes.17G081200 Manihot esculenta HOM05D004308 ORTHO05D005139 1.3e-77 294.3 368 45.1
Cc00_g18210 Coffea canephora HOM05D004308 ORTHO05D005139 1.7e-77 293.9 367 46.0
PGSC0003DMG400032139 Solanum tuberosum HOM05D004308 ORTHO05D005139 3.2e-76 289.7 367 44.1
DCAR_001990 Daucus carota HOM05D004308 ORTHO05D005139 5.5e-76 288.9 373 44.0
Nitab4.5_0022753g0010 Nicotiana tabacum HOM05D004308 ORTHO05D005139 5.5e-76 288.9 367 45.5
ATR0598G220 Amborella trichopoda HOM05D004308 ORTHO05D005139 1.2e-75 287.7 311 48.6
FAN11G1034 Fragaria x ananassa HOM05D004308 ORTHO05D005139 1.2e-75 287.7 355 45.4
Eucgr.F02225 Eucalyptus grandis HOM05D004308 ORTHO05D005139 2.1e-75 287.0 367 45.5
Sc09g0000270 Simmondsia chinensis HOM05D004308 ORTHO05D005139 3.6e-75 286.2 336 46.4
Solyc01g006000.3 Solanum lycopersicum HOM05D004308 ORTHO05D005139 3.6e-75 286.2 367 44.4
SGA_v2.0_scaffold28G11761 Striga asiatica HOM05D004308 ORTHO05D005139 1.0e-74 284.6 369 45.5
Psat7g130280 Pisum sativum HOM05D004308 ORTHO05D005139 1.8e-74 283.9 371 45.0
CAN.G158.6 Capsicum annuum HOM05D004308 ORTHO05D005139 5.2e-74 282.3 367 43.9
SalBow5G0018 Salvia bowleyana HOM05D004308 ORTHO05D005139 6.8e-74 282.0 387 42.6
Sopen01g002010 Solanum pennellii HOM05D004308 ORTHO05D005139 6.8e-74 282.0 367 44.1
Lju963A2G3 Lonicera japonica HOM05D004308 ORTHO05D005139 1.2e-73 281.2 351 45.9
Nitab4.5_0001059g0010 Nicotiana tabacum HOM05D004308 ORTHO05D005139 2.6e-73 280.0 367 44.1
vmacro11846 Vaccinium macrocarpon HOM05D004308 ORTHO05D005139 7.5e-73 278.5 418 42.1
CiPaw.04G144200 Carya illinoinensis HOM05D004308 ORTHO05D005139 9.8e-73 278.1 367 46.6
Os12g0498700 Oryza sativa ssp. japonica HOM05D004308 ORTHO05D005139 3.7e-72 276.2 369 46.1
Lsat_1_v5_gn_3_32861 Lactuca sativa HOM05D004308 ORTHO05D005139 3.1e-71 273.1 367 45.8
Zm00001eb162820 Zea mays HOM05D004308 ORTHO05D005139 1.6e-70 270.8 370 43.8
AUR62019194 Chenopodium quinoa HOM05D004308 ORTHO05D005139 2.0e-70 270.4 337 46.9
PSO063G3498 Papaver somniferum HOM05D004308 ORTHO05D005139 5.9e-70 268.9 315 48.3
EL10Ac4g10352 Beta vulgaris HOM05D004308 ORTHO05D005139 2.9e-69 266.5 368 44.6
FAN21G1794 Fragaria x ananassa HOM05D004308 ORTHO05D005139 6.5e-69 265.4 328 45.7
Peaxi162Scf00100g00724 Petunia axillaris HOM05D004308 ORTHO05D005139 8.6e-69 265.0 404 41.3
SMO203G0184 Selaginella moellendorffii HOM05D004308 ORTHO05D005139 1.9e-68 263.8 370 43.8
Gohir.A10G002400 Gossypium hirsutum HOM05D004308 ORTHO05D005139 3.6e-67 259.6 320 46.9
MD11G1011600 Malus domestica HOM05D004308 ORTHO05D005139 8.0e-67 258.5 336 45.5
Duzib177G1053 Durio zibethinus HOM05D004308 ORTHO05D005139 1.7e-64 250.8 312 47.1
Hma1.2p1_0972F.1_g242793 Hydrangea macrophylla HOM05D004308 ORTHO05D005139 3.7e-64 249.6 363 42.4
MD14G1141900 Malus domestica HOM05D004308 ORTHO05D005139 4.9e-64 249.2 324 46.0
HanXRQChr07g0196751 Helianthus annuus HOM05D004308 ORTHO05D005139 1.4e-63 247.7 318 47.8
Ca_18762_v3 Cicer arietinum L. HOM05D004308 ORTHO05D005139 1.8e-63 247.3 311 45.3
Lj9A102G3 Lonicera japonica HOM05D004308 ORTHO05D005139 2.7e-62 243.4 340 43.2
Sabra03G0162000 Salix brachista HOM05D004308 ORTHO05D005139 2.7e-62 243.4 330 44.5
Phvul.002G098000 Phaseolus vulgaris HOM05D004308 ORTHO05D005139 1.7e-61 240.7 216 55.6
Rhsim13G0230300 Rhododendron simsii HOM05D004308 ORTHO05D005139 1.7e-61 240.7 315 45.4
FAN25G2014 Fragaria x ananassa HOM05D004308 ORTHO05D005139 2.9e-61 240.0 312 44.9
SHI31261 Sapria himalayana HOM05D004308 ORTHO05D005139 2.5e-60 236.9 337 44.5
CsaV3_1G042220 Cucumis sativus L. HOM05D004308 ORTHO05D005139 1.0e-58 231.5 221 53.4
Haze_22983 Corylus avellana HOM05D004308 ORTHO05D005139 2.3e-58 230.3 311 45.0
Lsat_1_v5_gn_4_166260 Lactuca sativa HOM05D004308 ORTHO05D005139 3.4e-57 226.5 305 43.0
CiPaw.13G173500 Carya illinoinensis HOM05D004308 ORTHO05D005139 1.7e-56 224.2 286 45.1
Lju1040C2G10 Lonicera japonica HOM05D004308 ORTHO05D005139 2.8e-51 206.8 256 44.5
CiPaw.13G173700 Carya illinoinensis HOM05D004308 ORTHO05D005139 6.2e-51 205.7 367 39.2
HPP92_026953 Vanilla planifolia HOM05D004308 ORTHO05D005139 1.6e-46 191.0 190 51.1
Lju366A0G8 Lonicera japonica HOM05D004308 ORTHO05D005139 2.0e-46 190.7 171 55.0
Lj9A97G16 Lonicera japonica HOM05D004308 ORTHO05D005139 3.0e-45 186.8 374 34.2
CiPaw.04G144000 Carya illinoinensis HOM05D004308 ORTHO05D005139 1.5e-44 184.5 160 56.2
SEGI_23646 Sequoiadendron giganteum HOM05D004308 ORTHO05D005139 2.3e-42 177.2 98 98.0
Zm00001eb118570 Zea mays HOM05D004308 ORTHO05D005139 4.9e-40 169.5 157 56.1
unitig_749.g14167 Utricularia gibba HOM05D004308 ORTHO05D005139 6.4e-40 169.1 368 37.0
CiPaw.13G173600 Carya illinoinensis HOM05D004308 ORTHO05D005139 1.4e-39 167.9 232 41.4
CiPaw.13G173800 Carya illinoinensis HOM05D004308 ORTHO05D005139 2.4e-39 167.2 370 34.6
Nn4g26332 Nelumbo nucifera HOM05D004308 ORTHO05D005139 1.2e-38 164.9 367 33.8
MD03G1008200 Malus domestica HOM05D004308 ORTHO05D005139 2.7e-38 163.7 535 28.4
Cpa.g.sc1833.2 Carica papaya HOM05D004308 ORTHO05D005139 4.6e-38 162.9 348 36.2
Lsat_1_v5_gn_3_8900 Lactuca sativa HOM05D004308 ORTHO05D005139 1.3e-37 161.4 199 46.2
CiPaw.13G174000 Carya illinoinensis HOM05D004308 ORTHO05D005139 8.9e-34 148.7 205 42.4
Lju2253A0T6 Lonicera japonica HOM05D004308 ORTHO05D005139 1.5e-33 147.9 270 37.4
Lju357C0G0 Lonicera japonica HOM05D004308 ORTHO05D005139 4.9e-32 142.9 121 53.7
QL01p010377 Quercus lobata HOM05D004308 ORTHO05D005139 2.1e-30 137.5 129 51.9
Lju1680A2G14 Lonicera japonica HOM05D004308 ORTHO05D005139 6.0e-30 136.0 225 40.9
MCO10G290 Micromonas commoda HOM05D004308 ORTHO05D005139 1.4e-26 124.8 379 30.9
Hma1.2p1_0972F.1_g242796 Hydrangea macrophylla HOM05D004308 ORTHO05D005139 5.2e-26 122.9 122 52.5
TAR623G1609 Trochodendron aralioides HOM05D004308 ORTHO05D005139 5.4e-23 112.8 92 59.8
Lju963A1G2 Lonicera japonica HOM05D004308 ORTHO05D005139 6.0e-22 109.4 151 40.4
CARHR012200 Cardamine hirsuta HOM05D004308 ORTHO05D005139 5.1e-21 106.3 98 54.1
Cre07.g320650 Chlamydomonas reinhardtii HOM05D004308 ORTHO05D005139 9.6e-20 102.1 349 29.2
COL.COLO4_34992 Corchorus olitorius HOM05D004308 ORTHO05D005139 9.6e-20 102.1 93 58.1
Glyma.20G019967 Glycine max HOM05D004308 ORTHO05D005139 5.8e-17 92.8 140 36.4
PRCOL_00002453 Prasinoderma coloniale HOM05D004308 ORTHO05D005139 5.8e-17 92.8 374 28.6
Glyma.20G020033 Glycine max HOM05D004308 ORTHO05D005139 2.9e-16 90.5 95 50.5
CBR_g46841 Chara braunii HOM05D004308 ORTHO05D005139 4.9e-16 89.7 87 49.4
DCAR_001389 Daucus carota HOM05D004308 ORTHO05D005139 2.4e-15 87.4 79 62.0
Lju963A4G1 Lonicera japonica HOM05D004308 ORTHO05D005139 4.6e-14 83.2 79 48.1
Lju1680A2G13 Lonicera japonica HOM05D004308 ORTHO05D005139 2.1e-11 74.3 64 64.1
Lj9A108T0 Lonicera japonica HOM05D004308 ORTHO05D005139 3.1e-10 70.5 124 36.3
Lsat_1_v5_gn_9_99701 Lactuca sativa HOM05D004308 ORTHO05D005139 1.7e-08 64.7 63 55.6
Nitab4.5_0000032g0180 Nicotiana tabacum HOM05D004308 ORTHO05D005139 2.2e-08 64.3 67 52.2
AUR62037285 Chenopodium quinoa HOM05D004308 ORTHO05D005139 1.2e-06 58.5 39 71.8


User provided reference genes

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