Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_38928 Sequoiadendron giganteum HOM05D002716 ORTHO05D385362 4.9e-109 397.9 213 100.0
SEGI_28864 Sequoiadendron giganteum HOM05D002716 ORTHO05D386108 2.5e-20 103.2 106 61.3
ATR0706G286 Amborella trichopoda HOM05D002716 ORTHO05D003324 1.4e-10 70.9 100 42.0
MBI17_g25602_MAGBIO Magnolia biondii HOM05D002716 ORTHO05D003324 1.4e-10 70.9 112 39.3
Peaxi162Scf00362g00546 Petunia axillaris HOM05D002716 ORTHO05D003324 6.8e-10 68.6 100 42.0
Atru.chr5.3381 Acer truncatum HOM05D002716 ORTHO05D003324 1.5e-09 67.4 101 45.5
Thecc.02G057700 Theobroma cacao HOM05D002716 ORTHO05D003324 1.5e-09 67.4 97 43.3
GSVIVG01008761001 Vitis vinifera HOM05D002716 ORTHO05D003324 1.5e-09 67.4 100 43.0
Ciclev10028313m.g Citrus clementina HOM05D002716 ORTHO05D003324 2.0e-09 67.0 101 42.6
TAR381G0159 Trochodendron aralioides HOM05D002716 ORTHO05D003324 2.0e-09 67.0 102 43.1
TAR628G1735 Trochodendron aralioides HOM05D002716 ORTHO05D003324 2.6e-09 66.6 102 44.1
MSTRG.16922 Avicennia marina HOM05D002716 ORTHO05D003324 3.4e-09 66.2 100 41.0
Gorai.008G037000 Gossypium raimondii HOM05D002716 ORTHO05D003324 3.4e-09 66.2 115 40.0
Hma1.2p1_0163F.1_g072580 Hydrangea macrophylla HOM05D002716 ORTHO05D003324 3.4e-09 66.2 108 40.7
Lsat_1_v5_gn_8_123101 Lactuca sativa HOM05D002716 ORTHO05D003324 3.4e-09 66.2 100 41.0
COL.COLO4_17361 Corchorus olitorius HOM05D002716 ORTHO05D003324 4.4e-09 65.9 100 40.0
Gohir.D01G160800 Gossypium hirsutum HOM05D002716 ORTHO05D003324 4.4e-09 65.9 100 42.0
Gorai.002G199200 Gossypium raimondii HOM05D002716 ORTHO05D003324 4.4e-09 65.9 100 42.0
Duzib093G1538 Durio zibethinus HOM05D002716 ORTHO05D003324 5.8e-09 65.5 110 41.8
MBI17_g25603_MAGBIO Magnolia biondii HOM05D002716 ORTHO05D003324 7.5e-09 65.1 99 41.4
Manes.11G097100 Manihot esculenta HOM05D002716 ORTHO05D003324 7.5e-09 65.1 100 40.0
HanXRQChr15g0477991 Helianthus annuus HOM05D002716 ORTHO05D003324 9.8e-09 64.7 101 43.6
Sopen01g053750 Solanum pennellii HOM05D002716 ORTHO05D003324 9.8e-09 64.7 100 40.0
Dinv41927 Davidia involucrata HOM05D002716 ORTHO05D003324 1.3e-08 64.3 102 43.1
Gohir.A01G169700 Gossypium hirsutum HOM05D002716 ORTHO05D003324 1.3e-08 64.3 102 43.1
Lsat_1_v5_gn_3_47581 Lactuca sativa HOM05D002716 ORTHO05D003324 1.3e-08 64.3 100 41.0
Manes.04G071700 Manihot esculenta HOM05D002716 ORTHO05D003324 1.3e-08 64.3 100 41.0
Nn5g30817 Nelumbo nucifera HOM05D002716 ORTHO05D003324 1.3e-08 64.3 102 43.1
Nitab4.5_0003698g0050 Nicotiana tabacum HOM05D002716 ORTHO05D003324 1.3e-08 64.3 100 39.0
Prupe.1G360600 Prunus persica HOM05D002716 ORTHO05D003324 1.3e-08 64.3 100 43.0
Gohir.D12G035700 Gossypium hirsutum HOM05D002716 ORTHO05D003324 1.7e-08 63.9 115 40.0
Nitab4.5_0000283g0490 Nicotiana tabacum HOM05D002716 ORTHO05D003324 1.7e-08 63.9 100 39.0
PGSC0003DMG401006167 Solanum tuberosum HOM05D002716 ORTHO05D003324 1.7e-08 63.9 100 40.0
Mapoly0015s0013 Marchantia polymorpha HOM05D002716 ORTHO05D003324 2.2e-08 63.5 63 54.0
Thecc.08G049700 Theobroma cacao HOM05D002716 ORTHO05D003324 2.2e-08 63.5 100 42.0
GSVIVG01024003001 Vitis vinifera HOM05D002716 ORTHO05D003324 2.2e-08 63.5 102 43.1
Actinidia32036 Actinidia chinensis HOM05D002716 ORTHO05D003324 2.9e-08 63.2 101 41.6
Glyma.17G260500 Glycine max HOM05D002716 ORTHO05D003324 2.9e-08 63.2 94 40.4
Solyc01g111710.4 Solanum lycopersicum HOM05D002716 ORTHO05D003324 2.9e-08 63.2 100 39.0
TWI31G1068 Tripterygium wilfordii HOM05D002716 ORTHO05D003324 2.9e-08 63.2 102 40.2
vmacro02284 Vaccinium macrocarpon HOM05D002716 ORTHO05D003324 2.9e-08 63.2 106 37.7
HPP92_020731 Vanilla planifolia HOM05D002716 ORTHO05D003324 2.9e-08 63.2 100 38.0
AL1G33040 Arabidopsis lyrata HOM05D002716 ORTHO05D003324 3.7e-08 62.8 100 41.0
Cpa.g.sc20.101 Carica papaya HOM05D002716 ORTHO05D003324 3.7e-08 62.8 100 40.0
CiPaw.05G083700 Carya illinoinensis HOM05D002716 ORTHO05D003324 3.7e-08 62.8 100 40.0
Duzib132G0164 Durio zibethinus HOM05D002716 ORTHO05D003324 3.7e-08 62.8 100 38.0
CARHR020700 Cardamine hirsuta HOM05D002716 ORTHO05D003324 4.9e-08 62.4 100 41.0
Duzib041G0394 Durio zibethinus HOM05D002716 ORTHO05D003324 4.9e-08 62.4 100 40.0
Migut.E00245 Erythranthe guttata HOM05D002716 ORTHO05D003324 4.9e-08 62.4 100 41.0
Potri.004G176600 Populus trichocarpa HOM05D002716 ORTHO05D003324 4.9e-08 62.4 100 49.0
SGA_v2.0_scaffold80G25836 Striga asiatica HOM05D002716 ORTHO05D003324 4.9e-08 62.4 102 41.2
Actinidia20519 Actinidia chinensis HOM05D002716 ORTHO05D003324 6.4e-08 62.0 102 40.2
Aa31LG7G4600 Aethionema arabicum HOM05D002716 ORTHO05D003324 6.4e-08 62.0 100 40.0
MSTRG.27632 Avicennia marina HOM05D002716 ORTHO05D003324 6.4e-08 62.0 100 40.0
Cpa.g.sc26.279 Carica papaya HOM05D002716 ORTHO05D003324 6.4e-08 62.0 101 39.6
CiPaw.06G120800 Carya illinoinensis HOM05D002716 ORTHO05D003324 6.4e-08 62.0 100 41.0
Eucgr.F03722 Eucalyptus grandis HOM05D002716 ORTHO05D003324 6.4e-08 62.0 100 40.0
Thhalv10007479m.g Eutrema salsugineum HOM05D002716 ORTHO05D003324 6.4e-08 62.0 100 41.0
Thhalv10018459m.g Eutrema salsugineum HOM05D002716 ORTHO05D003324 8.3e-08 61.6 101 38.6
Gohir.A12G036700 Gossypium hirsutum HOM05D002716 ORTHO05D003324 8.3e-08 61.6 100 40.0
Oeu019917.1 Olea europaea HOM05D002716 ORTHO05D003324 8.3e-08 61.6 102 41.2
SMO115G0004 Selaginella moellendorffii HOM05D002716 ORTHO05D003324 8.3e-08 61.6 64 43.8
MELO3C013344.2 Cucumis melo HOM05D002716 ORTHO05D003324 1.1e-07 61.2 72 44.4
Lj5C177G7 Lonicera japonica HOM05D002716 ORTHO05D003324 1.1e-07 61.2 102 41.2
QL11p051055 Quercus lobata HOM05D002716 ORTHO05D003324 1.1e-07 61.2 100 40.0
Sp1g17970 Schrenkiella parvula HOM05D002716 ORTHO05D003324 1.1e-07 61.2 100 40.0
Sp5g31110 Schrenkiella parvula HOM05D002716 ORTHO05D003324 1.1e-07 61.2 101 38.6
Potri.009G136900 Populus trichocarpa HOM05D002716 ORTHO05D003324 1.4e-07 60.8 100 39.0
Atru.chr13.234 Acer truncatum HOM05D002716 ORTHO05D003324 1.9e-07 60.5 100 40.0
Cc09_g09820 Coffea canephora HOM05D002716 ORTHO05D003324 1.9e-07 60.5 102 38.2
TAR376G0703 Trochodendron aralioides HOM05D002716 ORTHO05D003324 1.9e-07 60.5 97 39.2
CAN.G588.91 Capsicum annuum HOM05D002716 ORTHO05D003324 2.4e-07 60.1 100 38.0
CDE10G0545 Ceratophyllum demersum HOM05D002716 ORTHO05D003324 2.4e-07 60.1 100 36.0
HanXRQChr17g0544181 Helianthus annuus HOM05D002716 ORTHO05D003324 2.4e-07 60.1 74 41.9
SalBow1G6245 Salvia bowleyana HOM05D002716 ORTHO05D003324 2.4e-07 60.1 100 38.0
SalBow5G3315 Salvia bowleyana HOM05D002716 ORTHO05D003324 2.4e-07 60.1 100 39.0
SalBow5G5506 Salvia bowleyana HOM05D002716 ORTHO05D003324 2.4e-07 60.1 100 39.0
CSS0001298 Camellia sinensis var. sinensis HOM05D002716 ORTHO05D003324 3.2e-07 59.7 100 38.0
CANSAT25G0170 Cannabis sativa HOM05D002716 ORTHO05D003324 3.2e-07 59.7 100 40.0
ClCG02G003980 Citrullus lanatus HOM05D002716 ORTHO05D003324 3.2e-07 59.7 100 38.0
Sabra04G0118600 Salix brachista HOM05D002716 ORTHO05D003324 3.2e-07 59.7 100 39.0
TWI56G1090 Tripterygium wilfordii HOM05D002716 ORTHO05D003324 3.2e-07 59.7 100 39.0
Carub.0001s1973 Capsella rubella HOM05D002716 ORTHO05D003324 4.1e-07 59.3 100 40.0
ClCG06G000440 Citrullus lanatus HOM05D002716 ORTHO05D003324 4.1e-07 59.3 100 38.0
Haze_22686 Corylus avellana HOM05D002716 ORTHO05D003324 4.1e-07 59.3 100 41.0
Duzib116G0707 Durio zibethinus HOM05D002716 ORTHO05D003324 4.1e-07 59.3 100 40.0
TWI75G0288 Tripterygium wilfordii HOM05D002716 ORTHO05D003324 4.1e-07 59.3 100 39.0
Cfa005261 Carpinus fangiana HOM05D002716 ORTHO05D003324 5.4e-07 58.9 100 39.0
Haze_02123 Corylus avellana HOM05D002716 ORTHO05D003324 5.4e-07 58.9 100 39.0
Migut.B00069 Erythranthe guttata HOM05D002716 ORTHO05D003324 5.4e-07 58.9 100 39.0
VMungo1309G2869 Vigna mungo HOM05D002716 ORTHO05D003324 5.4e-07 58.9 100 37.0
AT1G20200 Arabidopsis thaliana HOM05D002716 ORTHO05D003324 7.1e-07 58.5 100 39.0
Glyma.06G021600 Glycine max HOM05D002716 ORTHO05D003324 7.1e-07 58.5 100 36.0
Rhsim11G0192900 Rhododendron simsii HOM05D002716 ORTHO05D003324 7.1e-07 58.5 106 36.8
RcHm_v2.0_Chr6g0278511 Rosa chinensis HOM05D002716 ORTHO05D003324 7.1e-07 58.5 102 40.2
Sabra09G0106400 Salix brachista HOM05D002716 ORTHO05D003324 7.1e-07 58.5 100 38.0
arahy.Tifrunner.gnm1.ann1.8ZA7SM Arachis hypogaea HOM05D002716 ORTHO05D003324 9.2e-07 58.2 100 37.0
arahy.Tifrunner.gnm1.ann1.ZPAF0L Arachis hypogaea HOM05D002716 ORTHO05D003324 9.2e-07 58.2 100 37.0
BcaB03g12876 Brassica carinata HOM05D002716 ORTHO05D003324 9.2e-07 58.2 100 38.0
DCAR_022816 Daucus carota HOM05D002716 ORTHO05D003324 9.2e-07 58.2 104 38.5
SGA_v2.0_scaffold32G13291 Striga asiatica HOM05D002716 ORTHO05D003324 9.2e-07 58.2 97 38.1
AT1G75990 Arabidopsis thaliana HOM05D002716 ORTHO05D003324 1.2e-06 57.8 101 37.6
CsaV3_7G001120 Cucumis sativus L. HOM05D002716 ORTHO05D003324 1.2e-06 57.8 72 43.1
Hma1.2p1_0032F.1_g019290 Hydrangea macrophylla HOM05D002716 ORTHO05D003324 1.2e-06 57.8 102 42.2
Nitab4.5_0000079g0260 Nicotiana tabacum HOM05D002716 ORTHO05D003324 1.2e-06 57.8 99 41.4
PSO541G6303 Papaver somniferum HOM05D002716 ORTHO05D003324 1.2e-06 57.8 100 36.0
PSO675G5151 Papaver somniferum HOM05D002716 ORTHO05D003324 1.2e-06 57.8 100 36.0
THA.LOC104811436 Tarenaya hassleriana HOM05D002716 ORTHO05D003324 1.2e-06 57.8 100 39.0
CSS0022749 Camellia sinensis var. sinensis HOM05D002716 ORTHO05D003324 1.6e-06 57.4 102 39.2
CARHR069530 Cardamine hirsuta HOM05D002716 ORTHO05D003324 1.6e-06 57.4 101 37.6
FvH4_2g15510 Fragaria vesca HOM05D002716 ORTHO05D003324 1.6e-06 57.4 100 37.0
FAN20G1830 Fragaria x ananassa HOM05D002716 ORTHO05D003324 1.6e-06 57.4 100 37.0
FAN24G2429 Fragaria x ananassa HOM05D002716 ORTHO05D003324 1.6e-06 57.4 100 37.0
Prupe.8G167300 Prunus persica HOM05D002716 ORTHO05D003324 1.6e-06 57.4 100 37.0
AL2G36010 Arabidopsis lyrata HOM05D002716 ORTHO05D003324 2.1e-06 57.0 101 37.6
BraA07t31682Z Brassica rapa HOM05D002716 ORTHO05D003324 2.1e-06 57.0 100 36.0
Cc04_g03370 Coffea canephora HOM05D002716 ORTHO05D003324 2.1e-06 57.0 83 39.8
Lj1g0026889 Lotus japonicus HOM05D002716 ORTHO05D003324 2.1e-06 57.0 100 37.0
Oeu006691.1 Olea europaea HOM05D002716 ORTHO05D003324 2.1e-06 57.0 100 38.0
Sed0024991 Sechium edule HOM05D002716 ORTHO05D003324 2.1e-06 57.0 102 40.2
TPR.G26388 Trifolium pratense HOM05D002716 ORTHO05D003324 2.1e-06 57.0 98 38.8
Aa31LG4G6140 Aethionema arabicum HOM05D002716 ORTHO05D003324 2.7e-06 56.6 101 37.6
AagrBONN_evm.TU.Sc2ySwM_117.3904 Anthoceros agrestis HOM05D002716 ORTHO05D003324 2.7e-06 56.6 66 47.0
Carub.0002s2288 Capsella rubella HOM05D002716 ORTHO05D003324 2.7e-06 56.6 100 38.0
Dinv14119 Davidia involucrata HOM05D002716 ORTHO05D003324 2.7e-06 56.6 102 39.2
Phvul.009G019100 Phaseolus vulgaris HOM05D002716 ORTHO05D003324 2.7e-06 56.6 100 36.0
QL02p012612 Quercus lobata HOM05D002716 ORTHO05D003324 2.7e-06 56.6 100 40.0
Ca_15472_v3 Cicer arietinum L. HOM05D002716 ORTHO05D003324 3.5e-06 56.2 100 36.0
FAN27G2652 Fragaria x ananassa HOM05D002716 ORTHO05D003324 3.5e-06 56.2 100 37.0
ECA246G3931 Erigeron canadensis HOM05D002716 ORTHO05D003324 4.6e-06 55.8 101 40.6
Hund05156 Selenicereus undatus HOM05D002716 ORTHO05D003324 4.6e-06 55.8 102 41.2
Hund05163 Selenicereus undatus HOM05D002716 ORTHO05D003324 4.6e-06 55.8 102 41.2
Os09g0541900 Oryza sativa ssp. japonica HOM05D002716 ORTHO05D003324 6.0e-06 55.5 64 45.3
CAN.G588.90 Capsicum annuum HOM05D002716 ORTHO05D003324 7.8e-06 55.1 76 40.8


User provided reference genes

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