Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_38809 Sequoiadendron giganteum HOM05D000113 ORTHO05D384653 2.3e-38 161.8 84 100.0
ATR0602G052 Amborella trichopoda HOM05D000113 ORTHO05D001798 5.4e-11 70.9 43 76.7
CDE04G1430 Ceratophyllum demersum HOM05D000113 ORTHO05D001798 2.1e-10 68.9 56 57.1
Haze_06286 Corylus avellana HOM05D000113 ORTHO05D001798 2.3e-09 65.5 65 50.8
Nn1g08998 Nelumbo nucifera HOM05D000113 ORTHO05D001798 2.3e-09 65.5 55 58.2
Aqoxy4G00513 Aquilegia oxysepala HOM05D000113 ORTHO05D001798 3.9e-09 64.7 54 55.6
TAR624G1113 Trochodendron aralioides HOM05D000113 ORTHO05D001798 3.9e-09 64.7 55 60.0
ClCG03G007910 Citrullus lanatus HOM05D000113 ORTHO05D001798 6.6e-09 63.9 55 58.2
PSO832G2438 Papaver somniferum HOM05D000113 ORTHO05D001798 6.6e-09 63.9 55 52.7
QL05p044167 Quercus lobata HOM05D000113 ORTHO05D001798 6.6e-09 63.9 55 56.4
Rhsim02G0138700 Rhododendron simsii HOM05D000113 ORTHO05D001798 6.6e-09 63.9 55 52.7
Rhsim02G0139000 Rhododendron simsii HOM05D000113 ORTHO05D001798 6.6e-09 63.9 55 52.7
GSVIVG01021163001 Vitis vinifera HOM05D000113 ORTHO05D001798 6.6e-09 63.9 57 52.6
MD05G1305600 Malus domestica HOM05D000113 ORTHO05D001798 8.7e-09 63.5 55 52.7
PSO210G4174 Papaver somniferum HOM05D000113 ORTHO05D001798 1.9e-08 62.4 55 50.9
Lsat_1_v5_gn_7_23681 Lactuca sativa HOM05D000113 ORTHO05D001798 2.5e-08 62.0 55 52.7
COL.COLO4_31356 Corchorus olitorius HOM05D000113 ORTHO05D001798 3.3e-08 61.6 55 49.1
FvH4_5g21450 Fragaria vesca HOM05D000113 ORTHO05D001798 3.3e-08 61.6 55 50.9
FAN08G2639 Fragaria x ananassa HOM05D000113 ORTHO05D001798 3.3e-08 61.6 55 50.9
RcHm_v2.0_Chr5g0009991 Rosa chinensis HOM05D000113 ORTHO05D001798 3.3e-08 61.6 55 50.9
CsaV3_1G012660 Cucumis sativus L. HOM05D000113 ORTHO05D001798 4.3e-08 61.2 55 56.4
Dinv40643 Davidia involucrata HOM05D000113 ORTHO05D001798 4.3e-08 61.2 55 54.5
Manes.17G052600 Manihot esculenta HOM05D000113 ORTHO05D001798 4.3e-08 61.2 57 47.4
Thecc.06G176600 Theobroma cacao HOM05D000113 ORTHO05D001798 4.3e-08 61.2 55 50.9
CBR_g17902 Chara braunii HOM05D000113 ORTHO05D001798 7.3e-08 60.5 49 59.2
Os01g0212100 Oryza sativa ssp. japonica HOM05D000113 ORTHO05D001798 7.3e-08 60.5 55 49.1
Sabra04G0034100 Salix brachista HOM05D000113 ORTHO05D001798 7.3e-08 60.5 55 50.9
Zm00001eb120110 Zea mays HOM05D000113 ORTHO05D001798 7.3e-08 60.5 55 49.1
Ah.09g237860 Amaranthus hybridus HOM05D000113 ORTHO05D001798 9.6e-08 60.1 57 45.6
SGA_v2.0_scaffold171G38901 Striga asiatica HOM05D000113 ORTHO05D001798 9.6e-08 60.1 49 57.1
SGA_v2.0_scaffold440G51660 Striga asiatica HOM05D000113 ORTHO05D001798 9.6e-08 60.1 49 57.1
vmacro15957 Vaccinium macrocarpon HOM05D000113 ORTHO05D001798 9.6e-08 60.1 55 50.9
CSS0027215 Camellia sinensis var. sinensis HOM05D000113 ORTHO05D001798 1.2e-07 59.7 55 54.5
Sed0004866 Sechium edule HOM05D000113 ORTHO05D001798 1.2e-07 59.7 48 64.6
HPP92_002847 Vanilla planifolia HOM05D000113 ORTHO05D001798 1.2e-07 59.7 47 55.3
Lj2C295G3 Lonicera japonica HOM05D000113 ORTHO05D001798 1.6e-07 59.3 49 57.1
CiPaw.09G066700 Carya illinoinensis HOM05D000113 ORTHO05D001798 2.1e-07 58.9 55 49.1
Ciclev10014624m.g Citrus clementina HOM05D000113 ORTHO05D001798 2.1e-07 58.9 46 58.7
Duzib235G0852 Durio zibethinus HOM05D000113 ORTHO05D001798 2.1e-07 58.9 55 50.9
HanXRQChr04g0117181 Helianthus annuus HOM05D000113 ORTHO05D001798 2.1e-07 58.9 55 50.9
Sc05g0007250 Simmondsia chinensis HOM05D000113 ORTHO05D001798 2.1e-07 58.9 55 50.9
Potri.004G052700 Populus trichocarpa HOM05D000113 ORTHO05D001798 2.8e-07 58.5 55 50.9
Solyc09g097820.3 Solanum lycopersicum HOM05D000113 ORTHO05D001798 2.8e-07 58.5 47 55.3
Sopen09g035760 Solanum pennellii HOM05D000113 ORTHO05D001798 2.8e-07 58.5 47 55.3
Atru.chr10.1736 Acer truncatum HOM05D000113 ORTHO05D001798 3.6e-07 58.2 46 58.7
Cc02_g14380 Coffea canephora HOM05D000113 ORTHO05D001798 4.7e-07 57.8 61 44.3
DCAR_005241 Daucus carota HOM05D000113 ORTHO05D001798 6.2e-07 57.4 55 54.5
Eucgr.E02662 Eucalyptus grandis HOM05D000113 ORTHO05D001798 6.2e-07 57.4 57 45.6
Gohir.A10G029900 Gossypium hirsutum HOM05D000113 ORTHO05D001798 6.2e-07 57.4 58 46.6
Gorai.011G032400 Gossypium raimondii HOM05D000113 ORTHO05D001798 6.2e-07 57.4 58 46.6
Peaxi162Scf00286g00825 Petunia axillaris HOM05D000113 ORTHO05D001798 6.2e-07 57.4 47 53.2
AUR62031132 Chenopodium quinoa HOM05D000113 ORTHO05D001798 8.1e-07 57.0 58 48.3
Gohir.D10G030500 Gossypium hirsutum HOM05D000113 ORTHO05D001798 8.1e-07 57.0 58 46.6
AagrBONN_evm.TU.Sc2ySwM_117.2483 Anthoceros agrestis HOM05D000113 ORTHO05D001798 1.4e-06 56.2 52 50.0
arahy.Tifrunner.gnm1.ann1.4TP3R5 Arachis hypogaea HOM05D000113 ORTHO05D001798 1.8e-06 55.8 55 49.1
arahy.Tifrunner.gnm1.ann1.YHQH5W Arachis hypogaea HOM05D000113 ORTHO05D001798 1.8e-06 55.8 55 49.1
AUR62036538 Chenopodium quinoa HOM05D000113 ORTHO05D001798 1.8e-06 55.8 55 49.1
Lalb_Chr15g0089551 Lupinus albus HOM05D000113 ORTHO05D001798 1.8e-06 55.8 55 50.9
Prupe.4G056700 Prunus persica HOM05D000113 ORTHO05D001798 1.8e-06 55.8 55 47.3
PGSC0003DMG402017925 Solanum tuberosum HOM05D000113 ORTHO05D001798 1.8e-06 55.8 46 52.2
Aa31LG6G1220 Aethionema arabicum HOM05D000113 ORTHO05D001798 2.4e-06 55.5 55 49.1
ECA236G0415 Erigeron canadensis HOM05D000113 ORTHO05D001798 2.4e-06 55.5 55 47.3
Mapoly0080s0021 Marchantia polymorpha HOM05D000113 ORTHO05D001798 2.4e-06 55.5 44 61.4
Psat1g200640 Pisum sativum HOM05D000113 ORTHO05D001798 2.4e-06 55.5 55 49.1
Nitab4.5_0000309g0350 Nicotiana tabacum HOM05D000113 ORTHO05D001798 3.1e-06 55.1 47 53.2
PGR042G0655 Punica granatum HOM05D000113 ORTHO05D001798 3.1e-06 55.1 57 43.9
Carub.0007s2276 Capsella rubella HOM05D000113 ORTHO05D001798 4.0e-06 54.7 63 41.3
Lj6g0016463 Lotus japonicus HOM05D000113 ORTHO05D001798 4.0e-06 54.7 55 49.1
unitig_60.g25786 Utricularia gibba HOM05D000113 ORTHO05D001798 4.0e-06 54.7 65 40.0
CAN.G742.42 Capsicum annuum HOM05D000113 ORTHO05D001798 5.2e-06 54.3 47 51.1
VMungo0540G1745 Vigna mungo HOM05D000113 ORTHO05D001798 5.2e-06 54.3 55 45.5
AL7G35810 Arabidopsis lyrata HOM05D000113 ORTHO05D001798 6.9e-06 53.9 63 41.3
AT4G18465 Arabidopsis thaliana HOM05D000113 ORTHO05D001798 6.9e-06 53.9 55 45.5
EL10Ac8g20481 Beta vulgaris HOM05D000113 ORTHO05D001798 6.9e-06 53.9 58 50.0
A01p10440 Brassica napus HOM05D000113 ORTHO05D001798 6.9e-06 53.9 63 41.3
C01p12420 Brassica napus HOM05D000113 ORTHO05D001798 6.9e-06 53.9 63 41.3
BraA01t00990Z Brassica rapa HOM05D000113 ORTHO05D001798 6.9e-06 53.9 63 41.3
Thhalv10024567m.g Eutrema salsugineum HOM05D000113 ORTHO05D001798 6.9e-06 53.9 63 41.3
FAN18G3199 Fragaria x ananassa HOM05D000113 ORTHO05D001798 6.9e-06 53.9 64 43.8
Hma1.2p1_0155F.1_g068480 Hydrangea macrophylla HOM05D000113 ORTHO05D001798 6.9e-06 53.9 43 55.8
Oeu026694.1 Olea europaea HOM05D000113 ORTHO05D001798 6.9e-06 53.9 46 52.2
BcaC09g51504 Brassica carinata HOM05D000113 ORTHO05D001798 9.0e-06 53.5 63 41.3
BolC1t01216H Brassica oleracea HOM05D000113 ORTHO05D001798 9.0e-06 53.5 63 41.3
Phvul.006G179000 Phaseolus vulgaris HOM05D000113 ORTHO05D001798 9.0e-06 53.5 55 45.5
Pp3c24_70 Physcomitrium patens HOM05D000113 ORTHO05D001798 9.0e-06 53.5 48 45.8
THA.LOC104806145 Tarenaya hassleriana HOM05D000113 ORTHO05D001798 9.0e-06 53.5 55 41.8


User provided reference genes

Program Settings