Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_38540 Sequoiadendron giganteum HOM05D005444 ORTHO05D006773 2.5e-178 628.6 314 100.0
Mapoly0050s0097 Marchantia polymorpha HOM05D005444 ORTHO05D006773 5.4e-80 302.0 238 61.8
CANSAT54G1668 Cannabis sativa HOM05D005444 ORTHO05D006773 3.0e-78 296.2 240 60.4
Cfa011517 Carpinus fangiana HOM05D005444 ORTHO05D006773 1.2e-76 290.8 278 55.4
Actinidia34411 Actinidia chinensis HOM05D005444 ORTHO05D006773 2.8e-76 289.7 251 58.6
Manes.02G131500 Manihot esculenta HOM05D005444 ORTHO05D006773 2.8e-76 289.7 232 61.2
Dinv04178 Davidia involucrata HOM05D005444 ORTHO05D006773 3.6e-76 289.3 284 53.9
Haze_24114 Corylus avellana HOM05D005444 ORTHO05D006773 4.7e-76 288.9 278 54.7
GSVIVG01024939001 Vitis vinifera HOM05D005444 ORTHO05D006773 4.7e-76 288.9 253 59.7
AUR62009560 Chenopodium quinoa HOM05D005444 ORTHO05D006773 6.2e-76 288.5 241 58.9
Peaxi162Scf00774g00121 Petunia axillaris HOM05D005444 ORTHO05D006773 6.2e-76 288.5 241 60.2
Sed0025445 Sechium edule HOM05D005444 ORTHO05D006773 6.2e-76 288.5 251 58.2
HanXRQChr06g0178811 Helianthus annuus HOM05D005444 ORTHO05D006773 8.1e-76 288.1 239 59.0
Potri.001G241400 Populus trichocarpa HOM05D005444 ORTHO05D006773 8.1e-76 288.1 232 62.1
PSO339G5422 Papaver somniferum HOM05D005444 ORTHO05D006773 1.1e-75 287.7 254 58.7
Sc21g0005860 Simmondsia chinensis HOM05D005444 ORTHO05D006773 2.3e-75 286.6 238 60.5
Solyc06g076250.4 Solanum lycopersicum HOM05D005444 ORTHO05D006773 3.1e-75 286.2 253 59.3
Sopen06g032680 Solanum pennellii HOM05D005444 ORTHO05D006773 3.1e-75 286.2 253 59.3
Ciclev10028946m.g Citrus clementina HOM05D005444 ORTHO05D006773 4.0e-75 285.8 233 60.5
Aa31sc23G420 Aethionema arabicum HOM05D005444 ORTHO05D006773 8.9e-75 284.6 243 58.4
ATR0559G091 Amborella trichopoda HOM05D005444 ORTHO05D006773 2.0e-74 283.5 248 59.3
CAN.G394.63 Capsicum annuum HOM05D005444 ORTHO05D006773 2.0e-74 283.5 253 58.9
PGSC0003DMG401030323 Solanum tuberosum HOM05D005444 ORTHO05D006773 2.0e-74 283.5 253 58.5
CDE04G2637 Ceratophyllum demersum HOM05D005444 ORTHO05D006773 2.6e-74 283.1 263 55.5
Nitab4.5_0000463g0210 Nicotiana tabacum HOM05D005444 ORTHO05D006773 2.6e-74 283.1 239 59.0
TAR633G2200 Trochodendron aralioides HOM05D005444 ORTHO05D006773 2.6e-74 283.1 261 57.1
Potri.009G032300 Populus trichocarpa HOM05D005444 ORTHO05D006773 3.4e-74 282.7 237 59.1
Glyma.15G037500 Glycine max HOM05D005444 ORTHO05D006773 5.8e-74 282.0 254 56.3
PSO063G3487 Papaver somniferum HOM05D005444 ORTHO05D006773 5.8e-74 282.0 302 51.0
Lsat_1_v5_gn_8_73500 Lactuca sativa HOM05D005444 ORTHO05D006773 7.6e-74 281.6 239 56.9
Sabra09G0022900 Salix brachista HOM05D005444 ORTHO05D006773 7.6e-74 281.6 237 59.5
Cc01_g13010 Coffea canephora HOM05D005444 ORTHO05D006773 2.2e-73 280.0 233 60.9
BcaB08g36261 Brassica carinata HOM05D005444 ORTHO05D006773 2.9e-73 279.6 233 60.1
AT5G59400 Arabidopsis thaliana HOM05D005444 ORTHO05D006773 3.7e-73 279.3 255 56.1
HanXRQChr05g0135061 Helianthus annuus HOM05D005444 ORTHO05D006773 3.7e-73 279.3 240 57.5
ECA236G0569 Erigeron canadensis HOM05D005444 ORTHO05D006773 4.9e-73 278.9 232 58.2
Gohir.D07G103400 Gossypium hirsutum HOM05D005444 ORTHO05D006773 4.9e-73 278.9 241 58.1
MD03G1090200 Malus domestica HOM05D005444 ORTHO05D006773 4.9e-73 278.9 232 60.3
CSS0026048 Camellia sinensis var. sinensis HOM05D005444 ORTHO05D006773 6.4e-73 278.5 230 60.4
Gorai.001G111300 Gossypium raimondii HOM05D005444 ORTHO05D006773 6.4e-73 278.5 241 58.5
BcaC04g19778 Brassica carinata HOM05D005444 ORTHO05D006773 1.1e-72 277.7 233 59.2
C09p51810 Brassica napus HOM05D005444 ORTHO05D006773 1.1e-72 277.7 233 59.2
BolC9t58042H Brassica oleracea HOM05D005444 ORTHO05D006773 1.1e-72 277.7 233 59.2
Migut.D02083 Erythranthe guttata HOM05D005444 ORTHO05D006773 1.1e-72 277.7 230 61.3
CsaV3_1G034350 Cucumis sativus L. HOM05D005444 ORTHO05D006773 1.4e-72 277.3 262 55.3
AL8G35870 Arabidopsis lyrata HOM05D005444 ORTHO05D006773 1.9e-72 276.9 235 59.6
COL.COLO4_18527 Corchorus olitorius HOM05D005444 ORTHO05D006773 1.9e-72 276.9 232 58.6
TWI79G0937 Tripterygium wilfordii HOM05D005444 ORTHO05D006773 1.9e-72 276.9 232 60.8
BraA10t43744Z Brassica rapa HOM05D005444 ORTHO05D006773 2.4e-72 276.6 233 58.8
Atru.chr3.3946 Acer truncatum HOM05D005444 ORTHO05D006773 3.2e-72 276.2 232 57.3
FvH4_3g36480 Fragaria vesca HOM05D005444 ORTHO05D006773 4.1e-72 275.8 240 56.7
A10p16600 Brassica napus HOM05D005444 ORTHO05D006773 7.1e-72 275.0 233 58.4
CDE09G1090 Ceratophyllum demersum HOM05D005444 ORTHO05D006773 7.1e-72 275.0 255 58.4
AagrBONN_evm.TU.Sc2ySwM_368.577 Anthoceros agrestis HOM05D005444 ORTHO05D006773 1.2e-71 274.2 231 58.0
FAN21G3395 Fragaria x ananassa HOM05D005444 ORTHO05D006773 1.2e-71 274.2 240 57.1
Sp6g21080 Schrenkiella parvula HOM05D005444 ORTHO05D006773 2.1e-71 273.5 237 59.1
Carub.0008s2007 Capsella rubella HOM05D005444 ORTHO05D006773 2.7e-71 273.1 235 58.3
THA.LOC104810774 Tarenaya hassleriana HOM05D005444 ORTHO05D006773 2.7e-71 273.1 233 57.1
Gohir.A07G098900 Gossypium hirsutum HOM05D005444 ORTHO05D006773 3.5e-71 272.7 241 57.3
Eucgr.B02353 Eucalyptus grandis HOM05D005444 ORTHO05D006773 4.6e-71 272.3 245 56.3
Glyma.12G062600 Glycine max HOM05D005444 ORTHO05D006773 4.6e-71 272.3 252 55.6
RcHm_v2.0_Chr5g0065341 Rosa chinensis HOM05D005444 ORTHO05D006773 6.0e-71 271.9 231 58.4
Nitab4.5_0001326g0170 Nicotiana tabacum HOM05D005444 ORTHO05D006773 7.8e-71 271.6 264 53.8
MD11G1099800 Malus domestica HOM05D005444 ORTHO05D006773 1.3e-70 270.8 246 56.5
Glyma.13G336800 Glycine max HOM05D005444 ORTHO05D006773 1.7e-70 270.4 252 56.0
Hund04946 Selenicereus undatus HOM05D005444 ORTHO05D006773 1.7e-70 270.4 288 50.0
TPR.G34263 Trifolium pratense HOM05D005444 ORTHO05D006773 1.7e-70 270.4 266 51.9
Lj3g0017515 Lotus japonicus HOM05D005444 ORTHO05D006773 2.3e-70 270.0 231 59.7
QL01p031522 Quercus lobata HOM05D005444 ORTHO05D006773 2.3e-70 270.0 255 55.7
Medtr2g097230 Medicago truncatula HOM05D005444 ORTHO05D006773 3.9e-70 269.2 266 52.6
arahy.Tifrunner.gnm1.ann1.XH3YCC Arachis hypogaea HOM05D005444 ORTHO05D006773 2.5e-69 266.5 235 57.9
Phvul.011G063700 Phaseolus vulgaris HOM05D005444 ORTHO05D006773 2.5e-69 266.5 231 57.6
ClCG03G001420 Citrullus lanatus HOM05D005444 ORTHO05D006773 5.6e-69 265.4 296 50.0
Rhsim01G0229400 Rhododendron simsii HOM05D005444 ORTHO05D006773 5.6e-69 265.4 230 59.1
VMungo1127G0766 Vigna mungo HOM05D005444 ORTHO05D006773 5.6e-69 265.4 252 55.6
arahy.Tifrunner.gnm1.ann1.3F7RX4 Arachis hypogaea HOM05D005444 ORTHO05D006773 1.2e-68 264.2 235 57.4
arahy.Tifrunner.gnm1.ann1.T6ZDSA Arachis hypogaea HOM05D005444 ORTHO05D006773 2.8e-68 263.1 279 52.0
arahy.Tifrunner.gnm1.ann1.9NI65Y Arachis hypogaea HOM05D005444 ORTHO05D006773 3.6e-68 262.7 272 53.7
Ca_01319_v3 Cicer arietinum L. HOM05D005444 ORTHO05D006773 3.6e-68 262.7 231 56.3
SalBow3G1488 Salvia bowleyana HOM05D005444 ORTHO05D006773 1.1e-67 261.2 283 49.8
Sabra16G0145900 Salix brachista HOM05D005444 ORTHO05D006773 3.1e-67 259.6 212 61.3
Phvul.L006243 Phaseolus vulgaris HOM05D005444 ORTHO05D006773 4.0e-67 259.2 231 56.7
FAN16G3284 Fragaria x ananassa HOM05D005444 ORTHO05D006773 5.2e-67 258.8 269 51.7
Lalb_Chr01g0003631 Lupinus albus HOM05D005444 ORTHO05D006773 8.9e-67 258.1 252 55.2
Lj1A150T42 Lonicera japonica HOM05D005444 ORTHO05D006773 2.0e-66 256.9 220 59.1
vmacro14541 Vaccinium macrocarpon HOM05D005444 ORTHO05D006773 2.2e-65 253.4 218 59.2
EL10Ac7g16033 Beta vulgaris HOM05D005444 ORTHO05D006773 2.9e-65 253.1 214 57.5
Cpa.g.sc81.131 Carica papaya HOM05D005444 ORTHO05D006773 9.3e-64 248.1 234 55.6
FAN11G0832 Fragaria x ananassa HOM05D005444 ORTHO05D006773 1.6e-63 247.3 287 47.4
Pp3c1_24530 Physcomitrium patens HOM05D005444 ORTHO05D006773 1.6e-63 247.3 239 54.0
MELO3C020623.2 Cucumis melo HOM05D005444 ORTHO05D006773 2.5e-61 240.0 257 52.5
Actinidia23933 Actinidia chinensis HOM05D000001 ORTHO05D000003 3.3e-61 239.6 247 51.0
HPP92_009462 Vanilla planifolia HOM05D005444 ORTHO05D006773 3.3e-61 239.6 219 56.2
VMungo1080G1107 Vigna mungo HOM05D000758 ORTHO05D002867 5.6e-61 238.8 232 54.7
Pp3c14_5400 Physcomitrium patens HOM05D005444 ORTHO05D006773 3.1e-59 233.0 239 51.5
PGR102G1676 Punica granatum HOM05D005444 ORTHO05D006773 3.1e-59 233.0 253 51.0
Thecc.09G320000 Theobroma cacao HOM05D005444 ORTHO05D006773 9.0e-59 231.5 232 53.4
Dinv17019 Davidia involucrata HOM05D005444 ORTHO05D006773 1.5e-58 230.7 219 54.8
Dinv42967 Davidia involucrata HOM05D005444 ORTHO05D006773 1.5e-58 230.7 219 54.8
Dinv43132 Davidia involucrata HOM05D005444 ORTHO05D006773 1.5e-58 230.7 219 54.8
Psat5g286680 Pisum sativum HOM05D005444 ORTHO05D006773 1.3e-57 227.6 231 52.8
AUR62001772 Chenopodium quinoa HOM05D005444 ORTHO05D006773 1.7e-57 227.3 265 47.5
Duzib168G1171 Durio zibethinus HOM05D005444 ORTHO05D006773 2.2e-57 226.9 232 52.2
Oeu017397.1 Olea europaea HOM05D005444 ORTHO05D006773 6.4e-57 225.3 262 48.5
Prupe.6G074400 Prunus persica HOM05D005444 ORTHO05D006773 6.4e-57 225.3 193 62.2
CiPaw.13G092700 Carya illinoinensis HOM05D005444 ORTHO05D006773 1.1e-56 224.6 201 60.2
FAN25G3546 Fragaria x ananassa HOM05D005444 ORTHO05D006773 2.4e-56 223.4 234 50.4
Ca_19148_v3 Cicer arietinum L. HOM05D005444 ORTHO05D006773 1.6e-55 220.7 214 57.0
Thhalv10014435m.g Eutrema salsugineum HOM05D005444 ORTHO05D006773 3.3e-53 213.0 189 59.3
Hund18899 Selenicereus undatus HOM05D005444 ORTHO05D006773 4.0e-51 206.1 184 58.2
Oeu002422.1 Olea europaea HOM05D005444 ORTHO05D006773 4.0e-43 179.5 396 33.1
TPR.G1035 Trifolium pratense HOM05D005444 ORTHO05D006773 6.0e-39 165.6 185 50.8
PGSC0003DMG402030323 Solanum tuberosum HOM05D005444 ORTHO05D006773 1.2e-34 151.4 156 52.6
SGA_v2.0_scaffold203G41537 Striga asiatica HOM05D005444 ORTHO05D006773 2.6e-34 150.2 163 49.7
Aqoxy1G00927 Aquilegia oxysepala HOM05D005444 ORTHO05D006773 2.9e-33 146.7 96 70.8
MCO07G449 Micromonas commoda HOM05D005444 ORTHO05D006773 1.9e-32 144.1 230 37.4
CARHR285770 Cardamine hirsuta HOM05D005444 ORTHO05D006773 2.5e-32 143.7 159 49.7
TPR.G3768 Trifolium pratense HOM05D005444 ORTHO05D006773 1.6e-31 141.0 75 85.3
Aqoxy1G00926 Aquilegia oxysepala HOM05D005444 ORTHO05D006773 2.1e-31 140.6 140 52.9
SGA_v2.0_scaffold203G41535 Striga asiatica HOM05D005444 ORTHO05D006773 4.6e-31 139.4 78 80.8
Ah.15g097630 Amaranthus hybridus HOM05D005444 ORTHO05D006773 8.7e-30 135.2 83 73.5
Zm00001eb355820 Zea mays HOM05D005444 ORTHO05D006773 4.3e-29 132.9 152 47.4
unitig_747.g22036 Utricularia gibba HOM05D005444 ORTHO05D006773 5.7e-29 132.5 80 71.2
DCAR_005353 Daucus carota HOM05D005444 ORTHO05D006773 6.3e-28 129.0 107 55.1
Os05g0110800 Oryza sativa ssp. japonica HOM05D005444 ORTHO05D006773 3.1e-27 126.7 67 88.1
Nn2g13370 Nelumbo nucifera HOM05D005444 ORTHO05D006773 9.0e-27 125.2 80 68.8
Duzib170G0057 Durio zibethinus HOM05D005444 ORTHO05D006773 2.0e-26 124.0 135 50.4
HanXRQChr10g0291051 Helianthus annuus HOM05D005444 ORTHO05D006773 2.7e-23 113.6 90 61.1
HanXRQChr10g0291061 Helianthus annuus HOM05D005444 ORTHO05D006773 2.7e-23 113.6 90 61.1
HanXRQChr06g0167871 Helianthus annuus HOM05D000219 ORTHO05D006773 3.6e-23 113.2 82 65.9
unitig_747.g22037 Utricularia gibba HOM05D005444 ORTHO05D006773 4.8e-20 102.8 116 48.3
AUR62031662 Chenopodium quinoa HOM05D001050 ORTHO05D001270 3.9e-14 83.2 71 53.5
TPR.G376 Trifolium pratense HOM05D025391 ORTHO05D030167 6.7e-14 82.4 41 85.4
Psat5g007960 Pisum sativum HOM05D005444 ORTHO05D006773 8.8e-14 82.0 73 54.8
Ah.15g097620 Amaranthus hybridus HOM05D005444 ORTHO05D006773 2.2e-12 77.4 61 59.0
Medtr4g064030 Medicago truncatula HOM05D005444 ORTHO05D006773 6.3e-12 75.9 86 48.8
Psat4g229040 Pisum sativum HOM05D005444 ORTHO05D006773 6.3e-12 75.9 46 71.7
TPR.G27554 Trifolium pratense HOM05D005444 ORTHO05D006773 7.7e-10 68.9 74 50.0
BcaB01g04587 Brassica carinata HOM05D000021 ORTHO05D000010 2.2e-09 67.4 92 45.7
TPR.G27777 Trifolium pratense HOM05D005444 ORTHO05D006773 2.9e-09 67.0 53 52.8
Nitab4.5_0003274g0090 Nicotiana tabacum HOM05D003763 ORTHO05D004315 4.2e-08 63.2 191 26.7
SMO356G0021 Selaginella moellendorffii HOM05D003763 ORTHO05D004315 4.7e-07 59.7 201 25.9


User provided reference genes

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