Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_38224 Sequoiadendron giganteum HOM05D005840 ORTHO05D007144 2.5e-181 638.6 317 100.0
PSO063G5360 Papaver somniferum HOM05D005840 ORTHO05D007144 3.4e-58 229.6 289 44.6
Mapoly0031s0111 Marchantia polymorpha HOM05D005840 ORTHO05D007144 1.3e-57 227.6 219 53.4
Pp3c3_29470 Physcomitrium patens HOM05D005840 ORTHO05D007144 1.3e-57 227.6 241 48.5
CDE04G1956 Ceratophyllum demersum HOM05D005840 ORTHO05D007144 2.5e-56 223.4 195 57.9
PSO782G2283 Papaver somniferum HOM05D005840 ORTHO05D007144 2.5e-56 223.4 200 55.0
CDE12G0905 Ceratophyllum demersum HOM05D005840 ORTHO05D007144 3.2e-56 223.0 271 46.5
MBI12_g45814_MAGBIO Magnolia biondii HOM05D005840 ORTHO05D007144 7.9e-55 218.4 245 48.6
MD01G1228500 Malus domestica HOM05D005840 ORTHO05D007144 5.1e-54 215.7 195 53.8
QL09p007163 Quercus lobata HOM05D005840 ORTHO05D007144 6.7e-54 215.3 226 48.2
Cpa.g.sc3.150 Carica papaya HOM05D005840 ORTHO05D007144 8.8e-54 214.9 257 44.4
ClCG01G000060 Citrullus lanatus HOM05D005840 ORTHO05D007144 8.8e-54 214.9 212 49.1
BraA09t36291Z Brassica rapa HOM05D005840 ORTHO05D007144 1.1e-53 214.5 248 44.4
MD07G1299300 Malus domestica HOM05D005840 ORTHO05D007144 1.1e-53 214.5 195 52.3
TAR375G0732 Trochodendron aralioides HOM05D005840 ORTHO05D007144 1.1e-53 214.5 285 42.5
Sed0003210 Sechium edule HOM05D005840 ORTHO05D007144 1.5e-53 214.2 199 52.8
A09p06480 Brassica napus HOM05D005840 ORTHO05D007144 2.6e-53 213.4 248 44.4
Thhalv10005309m.g Eutrema salsugineum HOM05D005840 ORTHO05D007144 2.6e-53 213.4 215 47.9
BolC9t53635H Brassica oleracea HOM05D005840 ORTHO05D007144 3.3e-53 213.0 208 49.0
Gohir.D11G016500 Gossypium hirsutum HOM05D005840 ORTHO05D007144 4.4e-53 212.6 194 54.1
Sp2g22870 Schrenkiella parvula HOM05D005840 ORTHO05D007144 4.4e-53 212.6 215 47.4
CANSAT21G1965 Cannabis sativa HOM05D005840 ORTHO05D007144 7.4e-53 211.8 194 52.1
Ca_16781_v3 Cicer arietinum L. HOM05D005840 ORTHO05D007144 7.4e-53 211.8 202 51.0
Nn3g18788 Nelumbo nucifera HOM05D005840 ORTHO05D007144 7.4e-53 211.8 208 49.5
PGR042G3207 Punica granatum HOM05D005840 ORTHO05D007144 7.4e-53 211.8 212 50.0
BcaC04g23543 Brassica carinata HOM05D005840 ORTHO05D007144 9.7e-53 211.5 207 48.3
C09p07230 Brassica napus HOM05D005840 ORTHO05D007144 9.7e-53 211.5 207 48.3
TWI14G0550 Tripterygium wilfordii HOM05D005840 ORTHO05D007144 9.7e-53 211.5 205 50.2
Aa31LG11G3710 Aethionema arabicum HOM05D005840 ORTHO05D007144 1.7e-52 210.7 246 44.3
THA.LOC104798983 Tarenaya hassleriana HOM05D005840 ORTHO05D007144 1.7e-52 210.7 210 49.5
Dinv35383 Davidia involucrata HOM05D005840 ORTHO05D007144 2.2e-52 210.3 219 48.9
FvH4_7g32940 Fragaria vesca HOM05D005840 ORTHO05D007144 2.2e-52 210.3 200 50.5
Gohir.A11G016700 Gossypium hirsutum HOM05D005840 ORTHO05D007144 2.2e-52 210.3 193 54.4
Lsat_1_v5_gn_2_135020 Lactuca sativa HOM05D005840 ORTHO05D007144 2.2e-52 210.3 206 49.5
Peaxi162Scf00912g10012 Petunia axillaris HOM05D005840 ORTHO05D007144 2.2e-52 210.3 192 52.1
Thecc.03G209000 Theobroma cacao HOM05D005840 ORTHO05D007144 2.2e-52 210.3 196 52.6
AL6G36040 Arabidopsis lyrata HOM05D005840 ORTHO05D007144 2.8e-52 209.9 212 47.2
Ciclev10021557m.g Citrus clementina HOM05D005840 ORTHO05D007144 3.7e-52 209.5 245 44.1
Medtr3g092810 Medicago truncatula HOM05D005840 ORTHO05D007144 3.7e-52 209.5 206 51.0
CARHR188950 Cardamine hirsuta HOM05D005840 ORTHO05D007144 4.8e-52 209.1 216 47.2
Hma1.2p1_0094F.1_g047400 Hydrangea macrophylla HOM05D005840 ORTHO05D007144 4.8e-52 209.1 210 49.5
VMungo1309G2416 Vigna mungo HOM05D005840 ORTHO05D007144 4.8e-52 209.1 229 47.6
Potri.015G002500 Populus trichocarpa HOM05D005840 ORTHO05D007144 6.3e-52 208.8 204 51.0
TPR.G33360 Trifolium pratense HOM05D005840 ORTHO05D007144 6.3e-52 208.8 204 51.5
Lsat_1_v5_gn_9_49980 Lactuca sativa HOM05D005840 ORTHO05D007144 8.2e-52 208.4 208 49.0
Sabra15G0001600 Salix brachista HOM05D005840 ORTHO05D007144 8.2e-52 208.4 204 50.5
AT5G24460 Arabidopsis thaliana HOM05D005840 ORTHO05D007144 1.1e-51 208.0 209 46.9
Carub.0006s2229 Capsella rubella HOM05D005840 ORTHO05D007144 1.1e-51 208.0 244 43.0
Lalb_Chr23g0271941 Lupinus albus HOM05D005840 ORTHO05D007144 1.1e-51 208.0 202 51.5
Prupe.2G319100 Prunus persica HOM05D005840 ORTHO05D007144 1.1e-51 208.0 206 50.0
PGSC0003DMG400000562 Solanum tuberosum HOM05D005840 ORTHO05D007144 1.4e-51 207.6 200 52.0
Solyc03g081220.1 Solanum lycopersicum HOM05D005840 ORTHO05D007144 1.8e-51 207.2 200 52.5
FAN10G0422 Fragaria x ananassa HOM05D005840 ORTHO05D007144 2.4e-51 206.8 211 46.9
Ah.13g070770 Amaranthus hybridus HOM05D005840 ORTHO05D007144 3.1e-51 206.5 251 43.0
FAN10G3655 Fragaria x ananassa HOM05D005840 ORTHO05D007144 4.1e-51 206.1 258 43.0
Gorai.007G017300 Gossypium raimondii HOM05D005840 ORTHO05D007144 4.1e-51 206.1 194 52.6
Psat5g071840 Pisum sativum HOM05D005840 ORTHO05D007144 4.1e-51 206.1 203 50.7
Sopen03g021950 Solanum pennellii HOM05D005840 ORTHO05D007144 4.1e-51 206.1 200 52.0
MSTRG.26975 Avicennia marina HOM05D005840 ORTHO05D007144 5.3e-51 205.7 201 49.3
CSS0020402 Camellia sinensis var. sinensis HOM05D005840 ORTHO05D007144 5.3e-51 205.7 195 51.3
Duzib084G0063 Durio zibethinus HOM05D005840 ORTHO05D007144 5.3e-51 205.7 192 53.6
Manes.01G043400 Manihot esculenta HOM05D005840 ORTHO05D007144 5.3e-51 205.7 211 47.9
Phvul.009G044800 Phaseolus vulgaris HOM05D005840 ORTHO05D007144 6.9e-51 205.3 229 46.7
BcaB04g19821 Brassica carinata HOM05D005840 ORTHO05D007144 9.1e-51 204.9 213 45.1
C07p43220 Brassica napus HOM05D005840 ORTHO05D007144 9.1e-51 204.9 213 45.1
CAN.G303.23 Capsicum annuum HOM05D005840 ORTHO05D007144 9.1e-51 204.9 225 46.7
HanXRQChr10g0305331 Helianthus annuus HOM05D005840 ORTHO05D007144 1.2e-50 204.5 206 47.1
Nitab4.5_0010809g0010 Nicotiana tabacum HOM05D005840 ORTHO05D007144 1.5e-50 204.1 283 42.0
Haze_00300 Corylus avellana HOM05D005840 ORTHO05D007144 2.0e-50 203.8 200 48.5
Nitab4.5_0000319g0020 Nicotiana tabacum HOM05D005840 ORTHO05D007144 2.0e-50 203.8 283 41.7
CsaV3_5G000100 Cucumis sativus L. HOM05D005840 ORTHO05D007144 2.6e-50 203.4 205 48.8
FAN03G2485 Fragaria x ananassa HOM05D005840 ORTHO05D007144 2.6e-50 203.4 200 49.0
MELO3C005919.2 Cucumis melo HOM05D005840 ORTHO05D007144 3.4e-50 203.0 207 48.3
Lj3P895T18 Lonicera japonica HOM05D005840 ORTHO05D007144 3.4e-50 203.0 193 51.8
RcHm_v2.0_Chr1g0382901 Rosa chinensis HOM05D005840 ORTHO05D007144 4.5e-50 202.6 203 48.3
Glyma.06G136800 Glycine max HOM05D005840 ORTHO05D007144 1.3e-49 201.1 206 47.6
SMO140G0013 Selaginella moellendorffii HOM05D005840 ORTHO05D007144 1.3e-49 201.1 221 50.2
Actinidia34271 Actinidia chinensis HOM05D005840 ORTHO05D007144 1.7e-49 200.7 198 48.0
COL.COLO4_14373 Corchorus olitorius HOM05D005840 ORTHO05D007144 2.2e-49 200.3 193 52.3
Migut.F00150 Erythranthe guttata HOM05D005840 ORTHO05D007144 2.9e-49 199.9 265 40.4
Lalb_Chr08g0239571 Lupinus albus HOM05D005840 ORTHO05D007144 2.9e-49 199.9 231 46.8
CiPaw.06G041000 Carya illinoinensis HOM05D005840 ORTHO05D007144 3.8e-49 199.5 211 46.4
Gohir.A08G104700 Gossypium hirsutum HOM05D005840 ORTHO05D007144 5.0e-49 199.1 199 51.3
ATR0661G235 Amborella trichopoda HOM05D005840 ORTHO05D007144 6.5e-49 198.7 207 49.8
A06p35290 Brassica napus HOM05D005840 ORTHO05D007144 8.5e-49 198.4 205 44.9
AUR62005991 Chenopodium quinoa HOM05D005840 ORTHO05D007144 8.5e-49 198.4 249 41.4
Lj1g0001826 Lotus japonicus HOM05D005840 ORTHO05D007144 1.1e-48 198.0 203 47.8
AUR62028079 Chenopodium quinoa HOM05D005840 ORTHO05D007144 1.9e-48 197.2 249 41.0
DCAR_008987 Daucus carota HOM05D005840 ORTHO05D007144 1.9e-48 197.2 201 47.3
EL10Ac3g05171 Beta vulgaris HOM05D005840 ORTHO05D007144 2.5e-48 196.8 204 49.0
Glyma.04G228100 Glycine max HOM05D005840 ORTHO05D007144 2.5e-48 196.8 208 46.6
MSTRG.8611 Avicennia marina HOM05D005840 ORTHO05D007144 4.2e-48 196.1 211 46.9
Atru.chr12.2435 Acer truncatum HOM05D005840 ORTHO05D007144 7.2e-48 195.3 193 51.3
BcaNung01236 Brassica carinata HOM05D005840 ORTHO05D007144 7.2e-48 195.3 207 44.4
ECA232G4892 Erigeron canadensis HOM05D005840 ORTHO05D007144 7.2e-48 195.3 209 45.9
Oeu055391.1 Olea europaea HOM05D005840 ORTHO05D007144 9.4e-48 194.9 224 44.6
Gorai.004G125300 Gossypium raimondii HOM05D005840 ORTHO05D007144 1.2e-47 194.5 199 50.3
HPP92_022381 Vanilla planifolia HOM05D005840 ORTHO05D007144 1.2e-47 194.5 209 50.7
Sc19g0000580 Simmondsia chinensis HOM05D005840 ORTHO05D007144 1.6e-47 194.1 259 42.9
FAN01G0139 Fragaria x ananassa HOM05D005840 ORTHO05D007144 2.1e-47 193.7 207 46.4
Rhsim03G0215700 Rhododendron simsii HOM05D005840 ORTHO05D007144 2.1e-47 193.7 204 46.6
unitig_37.g11995 Utricularia gibba HOM05D005840 ORTHO05D007144 2.1e-47 193.7 204 49.0
Sed0025728 Sechium edule HOM05D005840 ORTHO05D007144 2.7e-47 193.4 200 50.5
BraA06t26455Z Brassica rapa HOM05D005840 ORTHO05D007144 4.7e-47 192.6 251 39.8
Oeu023690.1 Olea europaea HOM05D005840 ORTHO05D007144 6.1e-47 192.2 266 40.2
Aqoxy6G02459 Aquilegia oxysepala HOM05D005840 ORTHO05D007144 1.8e-46 190.7 214 47.2
Aqoxy6G02489 Aquilegia oxysepala HOM05D005840 ORTHO05D007144 1.8e-46 190.7 214 47.2
SalBow6G2506 Salvia bowleyana HOM05D005840 ORTHO05D007144 3.0e-46 189.9 207 48.3
Cc02_g00800 Coffea canephora HOM05D005840 ORTHO05D007144 6.7e-46 188.7 248 41.5
CBR_g20004 Chara braunii HOM05D005840 ORTHO05D007144 1.5e-45 187.6 182 56.0
SGA_v2.0_scaffold18G08468 Striga asiatica HOM05D005840 ORTHO05D007144 1.3e-44 184.5 200 46.5
unitig_0.g2444 Utricularia gibba HOM05D005840 ORTHO05D007144 6.3e-44 182.2 194 47.9
Actinidia08699 Actinidia chinensis HOM05D005840 ORTHO05D007144 1.3e-41 174.5 199 43.2
unitig_92.g28240 Utricularia gibba HOM05D005840 ORTHO05D007144 6.5e-41 172.2 198 47.5
vmacro06444 Vaccinium macrocarpon HOM05D005840 ORTHO05D007144 8.5e-41 171.8 257 37.7
vmacro22785 Vaccinium macrocarpon HOM05D005840 ORTHO05D007144 8.5e-41 171.8 257 37.7
SHI02291 Sapria himalayana HOM05D005840 ORTHO05D007144 9.4e-40 168.3 202 44.1
BcaB04g19819 Brassica carinata HOM05D005840 ORTHO05D007144 5.7e-37 159.1 160 49.4
Os06g0712200 Oryza sativa ssp. japonica HOM05D005840 ORTHO05D007144 1.2e-34 151.4 216 42.6
Zm00001eb272540 Zea mays HOM05D005840 ORTHO05D007144 4.2e-32 142.9 198 42.9
COL.COLO4_12096 Corchorus olitorius HOM05D005840 ORTHO05D007144 3.6e-31 139.8 171 48.0
Cc11_g13290 Coffea canephora HOM05D005840 ORTHO05D007144 5.2e-30 136.0 193 39.9
BcaNung02020 Brassica carinata HOM05D005840 ORTHO05D007144 1.7e-25 120.9 124 46.8
COL.COLO4_35601 Corchorus olitorius HOM05D005840 ORTHO05D007144 5.5e-24 115.9 206 35.4
BcaB04g19822 Brassica carinata HOM05D005840 ORTHO05D007144 2.2e-20 104.0 114 46.5
Cre01.g012300 Chlamydomonas reinhardtii HOM05D005840 ORTHO05D007144 6.6e-17 92.4 172 36.0
Gohir.D08G116401 Gossypium hirsutum HOM05D005840 ORTHO05D007144 6.6e-17 92.4 105 46.7
Duzib114G0266 Durio zibethinus HOM05D005840 ORTHO05D007144 8.6e-17 92.0 133 36.8
MCO06G087 Micromonas commoda HOM05D005840 ORTHO05D007144 6.1e-15 85.9 204 30.4
CAN.G2.4 Capsicum annuum HOM05D005840 ORTHO05D007144 5.4e-11 72.8 78 46.2
SalBow4G0698 Salvia bowleyana HOM05D001856 ORTHO05D007144 3.9e-09 66.6 50 54.0
SalBow6G2140 Salvia bowleyana HOM05D005840 ORTHO05D007144 6.6e-09 65.9 50 54.0
SEGI_33725 Sequoiadendron giganteum HOM05D001910 ORTHO05D003653 6.6e-09 65.9 46 69.6
SEGI_35904 Sequoiadendron giganteum HOM05D004439 ORTHO05D000007 1.5e-08 64.7 46 71.7
Potri.010G149800 Populus trichocarpa HOM05D005840 ORTHO05D007144 1.9e-08 64.3 80 43.8
COL.COLO4_35602 Corchorus olitorius HOM05D005840 ORTHO05D007144 1.8e-06 57.8 108 31.5


User provided reference genes

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