Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_38183 Sequoiadendron giganteum HOM05D003513 ORTHO05D004660 1.9e-127 459.5 244 100.0
SEGI_16177 Sequoiadendron giganteum HOM05D003513 ORTHO05D004660 8.7e-112 407.5 244 86.1
MBI18_g04900_MAGBIO Magnolia biondii HOM05D003513 ORTHO05D004660 6.4e-38 162.2 236 43.2
TAR375G0591 Trochodendron aralioides HOM05D003513 ORTHO05D004660 1.1e-37 161.4 230 44.3
MBI18_g12443_MAGBIO Magnolia biondii HOM05D003513 ORTHO05D004660 6.0e-36 155.6 239 42.3
Dinv17746 Davidia involucrata HOM05D003513 ORTHO05D004660 1.3e-35 154.5 232 42.2
Os07g0213400 Oryza sativa ssp. japonica HOM05D003513 ORTHO05D004660 8.6e-35 151.8 230 41.3
Zm00001eb325060 Zea mays HOM05D003513 ORTHO05D004660 7.3e-34 148.7 230 40.9
GSVIVG01036987001 Vitis vinifera HOM05D003513 ORTHO05D004660 9.5e-34 148.3 229 42.8
CDE07G1727 Ceratophyllum demersum HOM05D003513 ORTHO05D004660 3.6e-33 146.4 230 41.7
PSO339G4304 Papaver somniferum HOM05D003513 ORTHO05D004660 1.8e-32 144.1 234 43.2
ATR0681G195 Amborella trichopoda HOM05D003513 ORTHO05D004660 4.0e-32 142.9 245 42.9
CDE04G2077 Ceratophyllum demersum HOM05D000016 ORTHO05D000538 4.0e-32 142.9 196 46.4
vmacro01922 Vaccinium macrocarpon HOM05D003513 ORTHO05D004660 6.8e-32 142.1 229 43.7
PSO384G0236 Papaver somniferum HOM05D003513 ORTHO05D004660 1.2e-31 141.4 232 41.4
Mapoly0037s0029 Marchantia polymorpha HOM05D003513 ORTHO05D004660 5.8e-31 139.0 230 40.0
Ciclev10028868m.g Citrus clementina HOM05D003513 ORTHO05D004660 1.3e-30 137.9 227 41.9
Lj9A339T51 Lonicera japonica HOM05D003513 ORTHO05D004660 1.3e-30 137.9 232 43.5
MELO3C013317.2 Cucumis melo HOM05D003513 ORTHO05D004660 1.7e-30 137.5 231 42.4
Actinidia00338 Actinidia chinensis HOM05D003513 ORTHO05D004660 2.2e-30 137.1 228 44.7
Nn4g22684 Nelumbo nucifera HOM05D003513 ORTHO05D004660 4.9e-30 136.0 308 35.1
Thecc.02G033900 Theobroma cacao HOM05D003513 ORTHO05D004660 4.9e-30 136.0 256 39.1
COL.COLO4_17824 Corchorus olitorius HOM05D003513 ORTHO05D004660 1.1e-29 134.8 234 41.5
Duzib052G1139 Durio zibethinus HOM05D003513 ORTHO05D004660 1.4e-29 134.4 234 41.0
Hma1.2p1_0661F.1_g197860 Hydrangea macrophylla HOM05D003513 ORTHO05D004660 1.4e-29 134.4 229 40.2
CSS0016653 Camellia sinensis var. sinensis HOM05D003513 ORTHO05D004660 1.9e-29 134.0 246 39.0
ClCG02G003790 Citrullus lanatus HOM05D003513 ORTHO05D004660 1.9e-29 134.0 230 41.7
AagrBONN_evm.TU.Sc2ySwM_289.2 Anthoceros agrestis HOM05D003513 ORTHO05D004660 2.4e-29 133.7 247 38.9
AagrBONN_evm.TU.Sc2ySwM_362.2667 Anthoceros agrestis HOM05D003513 ORTHO05D004660 2.4e-29 133.7 247 38.9
Atru.chr4.2879 Acer truncatum HOM05D003513 ORTHO05D004660 3.2e-29 133.3 241 41.5
Glyma.15G062000 Glycine max HOM05D003513 ORTHO05D004660 3.2e-29 133.3 247 40.9
Actinidia02426 Actinidia chinensis HOM05D003513 ORTHO05D004660 7.0e-29 132.1 230 41.7
Gohir.D02G234600 Gossypium hirsutum HOM05D003513 ORTHO05D004660 1.2e-28 131.3 232 41.4
RcHm_v2.0_Chr6g0247131 Rosa chinensis HOM05D003513 ORTHO05D004660 1.2e-28 131.3 227 41.0
Gohir.A03G213100 Gossypium hirsutum HOM05D003513 ORTHO05D004660 2.7e-28 130.2 230 40.0
Manes.07G049900 Manihot esculenta HOM05D003513 ORTHO05D004660 2.7e-28 130.2 231 39.8
Duzib248G1448 Durio zibethinus HOM05D003513 ORTHO05D004660 4.6e-28 129.4 225 40.0
Eucgr.I02512 Eucalyptus grandis HOM05D003513 ORTHO05D004660 4.6e-28 129.4 232 43.5
Gorai.005G262600 Gossypium raimondii HOM05D003513 ORTHO05D004660 4.6e-28 129.4 230 40.0
CsaV3_7G001360 Cucumis sativus L. HOM05D003513 ORTHO05D004660 6.0e-28 129.0 207 42.5
MD05G1110900 Malus domestica HOM05D003513 ORTHO05D004660 6.0e-28 129.0 232 41.4
SMO119G0189 Selaginella moellendorffii HOM05D003513 ORTHO05D004660 1.3e-27 127.9 225 38.7
HPP92_011751 Vanilla planifolia HOM05D003513 ORTHO05D004660 1.3e-27 127.9 246 39.0
Aqoxy5G03939 Aquilegia oxysepala HOM05D003513 ORTHO05D004660 1.7e-27 127.5 233 39.1
ECA236G2279 Erigeron canadensis HOM05D003513 ORTHO05D004660 1.7e-27 127.5 234 38.9
FvH4_2g02710 Fragaria vesca HOM05D003513 ORTHO05D004660 1.7e-27 127.5 226 40.3
FAN15G2646 Fragaria x ananassa HOM05D003513 ORTHO05D004660 1.7e-27 127.5 226 42.5
Pp3c17_21630 Physcomitrium patens HOM05D003513 ORTHO05D004660 1.7e-27 127.5 248 37.5
MSTRG.8971 Avicennia marina HOM05D003513 ORTHO05D004660 2.3e-27 127.1 233 39.9
FAN27G0638 Fragaria x ananassa HOM05D003513 ORTHO05D004660 3.0e-27 126.7 226 41.2
MD10G1114400 Malus domestica HOM05D003513 ORTHO05D004660 3.0e-27 126.7 231 40.3
unitig_0.g631 Utricularia gibba HOM05D003513 ORTHO05D004660 3.0e-27 126.7 235 37.9
arahy.Tifrunner.gnm1.ann1.C4ZNB5 Arachis hypogaea HOM05D003513 ORTHO05D004660 3.9e-27 126.3 198 40.4
FAN24G3528 Fragaria x ananassa HOM05D003513 ORTHO05D004660 3.9e-27 126.3 226 41.2
SalBow6G6243 Salvia bowleyana HOM05D003513 ORTHO05D004660 3.9e-27 126.3 236 39.4
MSTRG.8970 Avicennia marina HOM05D003513 ORTHO05D004660 5.1e-27 125.9 231 40.7
HanXRQChr17g0550541 Helianthus annuus HOM05D003513 ORTHO05D004660 5.1e-27 125.9 235 39.6
Prupe.8G155900 Prunus persica HOM05D003513 ORTHO05D004660 5.1e-27 125.9 228 41.7
SGA_v2.0_scaffold32G12967 Striga asiatica HOM05D003513 ORTHO05D004660 5.1e-27 125.9 231 39.0
TWI23G0398 Tripterygium wilfordii HOM05D003513 ORTHO05D004660 8.6e-27 125.2 236 39.4
HPP92_025257 Vanilla planifolia HOM05D003513 ORTHO05D004660 8.6e-27 125.2 209 39.7
FAN20G2897 Fragaria x ananassa HOM05D003513 ORTHO05D004660 1.1e-26 124.8 226 42.0
Oeu010478.1 Olea europaea HOM05D003513 ORTHO05D004660 1.1e-26 124.8 244 38.9
Potri.009G082200 Populus trichocarpa HOM05D003513 ORTHO05D004660 1.1e-26 124.8 230 39.6
Sed0007617 Sechium edule HOM05D003513 ORTHO05D004660 1.1e-26 124.8 227 38.8
Psat1g212080 Pisum sativum HOM05D003513 ORTHO05D004660 1.9e-26 124.0 207 43.0
Medtr2g010510 Medicago truncatula HOM05D003513 ORTHO05D004660 2.5e-26 123.6 230 39.6
EL10Ac4g09206 Beta vulgaris HOM05D003513 ORTHO05D004660 3.3e-26 123.2 227 37.4
arahy.Tifrunner.gnm1.ann1.2E8PRH Arachis hypogaea HOM05D003513 ORTHO05D004660 4.3e-26 122.9 235 39.6
DCAR_029853 Daucus carota HOM05D003513 ORTHO05D004660 5.6e-26 122.5 229 42.8
Rhsim11G0147300 Rhododendron simsii HOM05D003513 ORTHO05D004660 7.3e-26 122.1 258 38.8
Oeu059873.1 Olea europaea HOM05D003513 ORTHO05D004660 9.5e-26 121.7 237 38.0
Aa31LG8G12720 Aethionema arabicum HOM05D003513 ORTHO05D004660 1.6e-25 120.9 230 39.6
Cc02_g20350 Coffea canephora HOM05D003513 ORTHO05D004660 1.6e-25 120.9 232 37.5
Glyma.13G253000 Glycine max HOM05D003513 ORTHO05D004660 1.6e-25 120.9 206 42.7
PGSC0003DMG400005104 Solanum tuberosum HOM05D003513 ORTHO05D004660 1.6e-25 120.9 227 37.9
Sabra09G0063800 Salix brachista HOM05D003513 ORTHO05D004660 2.1e-25 120.6 241 37.3
SHI04900 Sapria himalayana HOM05D003513 ORTHO05D004660 2.1e-25 120.6 214 40.7
Lj6g0027000 Lotus japonicus HOM05D003513 ORTHO05D004660 3.6e-25 119.8 231 42.9
arahy.Tifrunner.gnm1.ann1.K4QFJX Arachis hypogaea HOM05D003513 ORTHO05D004660 4.7e-25 119.4 235 38.7
PGR042G0778 Punica granatum HOM05D003513 ORTHO05D004660 4.7e-25 119.4 236 38.1
arahy.Tifrunner.gnm1.ann1.SQB86K Arachis hypogaea HOM05D003513 ORTHO05D004660 6.2e-25 119.0 236 39.4
THA.LOC104807196 Tarenaya hassleriana HOM05D003513 ORTHO05D004660 8.1e-25 118.6 207 41.5
Peaxi162Scf00016g03328 Petunia axillaris HOM05D003513 ORTHO05D004660 1.1e-24 118.2 230 39.6
Solyc01g106560.4 Solanum lycopersicum HOM05D003513 ORTHO05D004660 1.8e-24 117.5 227 37.0
TWI14G0477 Tripterygium wilfordii HOM05D003513 ORTHO05D004660 1.8e-24 117.5 232 37.5
VMungo0540G2261 Vigna mungo HOM05D003513 ORTHO05D004660 1.8e-24 117.5 231 41.6
CiPaw.16G055200 Carya illinoinensis HOM05D003513 ORTHO05D004660 2.3e-24 117.1 233 39.5
Ca_00197_v3 Cicer arietinum L. HOM05D000871 ORTHO05D000770 2.3e-24 117.1 230 36.5
Sopen01g048910 Solanum pennellii HOM05D003513 ORTHO05D004660 4.0e-24 116.3 227 36.6
Cfa004752 Carpinus fangiana HOM05D003513 ORTHO05D004660 5.2e-24 115.9 232 39.2
Lj6g0027758 Lotus japonicus HOM05D003513 ORTHO05D004660 6.8e-24 115.5 198 44.9
Lalb_Chr18g0060191 Lupinus albus HOM05D003513 ORTHO05D004660 1.2e-23 114.8 237 41.4
CANSAT11G1387 Cannabis sativa HOM05D003513 ORTHO05D004660 2.0e-23 114.0 230 37.0
Lsat_1_v5_gn_7_84220 Lactuca sativa HOM05D003513 ORTHO05D004660 2.0e-23 114.0 232 35.8
AL3G45960 Arabidopsis lyrata HOM05D003513 ORTHO05D004660 2.6e-23 113.6 232 38.4
Sp3g05980 Schrenkiella parvula HOM05D003513 ORTHO05D004660 2.6e-23 113.6 230 37.0
AL7G17790 Arabidopsis lyrata HOM05D003513 ORTHO05D004660 3.4e-23 113.2 194 41.8
QL11p027784 Quercus lobata HOM05D003513 ORTHO05D004660 1.7e-22 110.9 194 40.2
C03p42610 Brassica napus HOM05D003513 ORTHO05D004660 2.9e-22 110.2 229 36.7
Potri.001G287900 Populus trichocarpa HOM05D003513 ORTHO05D004660 2.9e-22 110.2 195 40.0
Cfa003376 Carpinus fangiana HOM05D003513 ORTHO05D004660 8.3e-22 108.6 232 38.4
BcaB07g32937 Brassica carinata HOM05D003513 ORTHO05D004660 5.4e-21 105.9 194 39.2
Carub.0003s2847 Capsella rubella HOM05D003513 ORTHO05D004660 1.6e-20 104.4 232 36.2
BraA01t00446Z Brassica rapa HOM05D003513 ORTHO05D004660 2.7e-20 103.6 235 33.6
BcaC09g52179 Brassica carinata HOM05D003513 ORTHO05D004660 4.6e-20 102.8 195 36.9
BolC1t00484H Brassica oleracea HOM05D003513 ORTHO05D004660 4.6e-20 102.8 195 36.9
Cpa.g.sc20.72 Carica papaya HOM05D003513 ORTHO05D004660 7.8e-20 102.1 175 40.0
CiPaw.05G024600 Carya illinoinensis HOM05D003513 ORTHO05D004660 7.8e-20 102.1 232 37.9
Dinv03362 Davidia involucrata HOM05D003513 ORTHO05D004660 7.8e-20 102.1 176 40.9
C01p05020 Brassica napus HOM05D003513 ORTHO05D004660 3.0e-19 100.1 194 37.6
BraA03t12683Z Brassica rapa HOM05D003513 ORTHO05D004660 5.1e-19 99.4 229 33.6
A03p35030 Brassica napus HOM05D003513 ORTHO05D004660 1.5e-18 97.8 229 34.5
Sp7g31420 Schrenkiella parvula HOM05D003513 ORTHO05D004660 3.3e-18 96.7 208 36.1
Atru.chr5.2163 Acer truncatum HOM05D003513 ORTHO05D004660 7.3e-18 95.5 176 39.8
AT4G33690 Arabidopsis thaliana HOM05D003513 ORTHO05D004660 9.5e-18 95.1 215 33.5
BolC3t16531H Brassica oleracea HOM05D003513 ORTHO05D004660 9.5e-18 95.1 231 32.9
A01p04630 Brassica napus HOM05D003513 ORTHO05D004660 1.6e-17 94.4 231 32.0
Lj1g0004946 Lotus japonicus HOM05D003513 ORTHO05D004660 3.6e-17 93.2 231 34.2
TAR629G2534 Trochodendron aralioides HOM05D003513 ORTHO05D004660 6.2e-17 92.4 112 50.9
AUR62005013 Chenopodium quinoa HOM05D003513 ORTHO05D004660 6.8e-16 89.0 227 31.3
Carub.0007s0673 Capsella rubella HOM05D003513 ORTHO05D004660 3.8e-14 83.2 87 52.9
Zm00001eb303370 Zea mays HOM05D003513 ORTHO05D004660 3.8e-14 83.2 173 35.3
AUR62000955 Chenopodium quinoa HOM05D003513 ORTHO05D004660 8.4e-14 82.0 67 56.7
Glyma.07G229300 Glycine max HOM05D003513 ORTHO05D004660 1.9e-13 80.9 67 61.2
Sabra16G0180200 Salix brachista HOM05D003513 ORTHO05D004660 2.4e-13 80.5 227 30.0
BraA01t02793Z Brassica rapa HOM05D004336 ORTHO05D004660 9.2e-13 78.6 194 33.5
BcaC04g20358 Brassica carinata HOM05D003513 ORTHO05D004660 1.1e-10 71.6 77 48.1
A05p21550 Brassica napus HOM05D003513 ORTHO05D004660 1.9e-10 70.9 194 30.4
BraA05t21075Z Brassica rapa HOM05D003513 ORTHO05D004660 1.9e-10 70.9 194 30.4
Sc21g0000900 Simmondsia chinensis HOM05D003513 ORTHO05D004660 1.9e-10 70.9 189 30.7
CAN.G192.6 Capsicum annuum HOM05D003513 ORTHO05D004660 3.3e-10 70.1 207 33.3
BcaB02g10961 Brassica carinata HOM05D003513 ORTHO05D004660 4.3e-10 69.7 69 53.6
Migut.B00497 Erythranthe guttata HOM05D003513 ORTHO05D004660 5.6e-10 69.3 192 31.2
Eucgr.L02047 Eucalyptus grandis HOM05D003513 ORTHO05D004660 1.6e-09 67.8 180 37.8
Nitab4.5_0007763g0010 Nicotiana tabacum HOM05D003513 ORTHO05D004660 4.8e-09 66.2 184 32.1
Nitab4.5_0001477g0150 Nicotiana tabacum HOM05D003513 ORTHO05D004660 6.2e-09 65.9 191 33.5
CARHR105270 Cardamine hirsuta HOM05D003513 ORTHO05D004660 8.1e-09 65.5 200 32.0
Hund24144 Selenicereus undatus HOM05D003513 ORTHO05D004660 3.1e-08 63.5 184 30.4
BcaB04g17698 Brassica carinata HOM05D003513 ORTHO05D004660 9.0e-08 62.0 206 31.6
A08p11320 Brassica napus HOM05D003513 ORTHO05D004660 9.0e-08 62.0 45 66.7
A10p16400 Brassica napus HOM05D003513 ORTHO05D004660 9.0e-08 62.0 45 66.7
C06p15560 Brassica napus HOM05D003513 ORTHO05D004660 9.0e-08 62.0 45 66.7
C08p23080 Brassica napus HOM05D003513 ORTHO05D004660 9.0e-08 62.0 45 66.7
BcaC08g44431 Brassica carinata HOM05D003513 ORTHO05D013524 2.6e-07 60.5 194 31.4
BcaC06g33105 Brassica carinata HOM05D005554 ORTHO05D021652 3.4e-07 60.1 35 80.0
C06p18710 Brassica napus HOM05D003513 ORTHO05D004660 4.4e-07 59.7 45 62.2
A09p33590 Brassica napus HOM05D003513 ORTHO05D004660 5.8e-07 59.3 43 67.4
TPR.G22787 Trifolium pratense HOM05D003513 ORTHO05D004660 5.8e-07 59.3 70 50.0
TWI59G0638 Tripterygium wilfordii HOM05D003513 ORTHO05D004660 5.8e-07 59.3 59 54.2
A04p04130 Brassica napus HOM05D003513 ORTHO05D004660 7.6e-07 58.9 194 30.9
A09p29610 Brassica napus HOM05D003513 ORTHO05D004660 7.6e-07 58.9 196 30.1
A03p61430 Brassica napus HOM05D003513 ORTHO05D004660 1.7e-06 57.8 43 65.1
BraA09t38150Z Brassica rapa HOM05D003513 ORTHO05D004660 1.7e-06 57.8 43 65.1
Atru.chr8.1462 Acer truncatum HOM05D002718 ORTHO05D003269 2.9e-06 57.0 50 56.0
BcaB06g26524 Brassica carinata HOM05D005554 ORTHO05D021652 8.4e-06 55.5 56 53.6


User provided reference genes

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