Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_38162 Sequoiadendron giganteum HOM05D005283 ORTHO05D006769 0.0e+00 1140.9 566 100.0
SEGI_40593 Sequoiadendron giganteum HOM05D005283 ORTHO05D006769 0.0e+00 1140.9 566 100.0
ATR0796G268 Amborella trichopoda HOM05D005283 ORTHO05D006769 9.6e-112 408.3 553 45.4
MBI18_g13696_MAGBIO Magnolia biondii HOM05D005283 ORTHO05D006769 5.3e-110 402.5 550 44.9
Nn3g21453 Nelumbo nucifera HOM05D005283 ORTHO05D006769 1.8e-105 387.5 548 43.2
Aqoxy2G02976 Aquilegia oxysepala HOM05D005283 ORTHO05D006769 6.7e-105 385.6 564 43.6
TAR362G0604 Trochodendron aralioides HOM05D005283 ORTHO05D006769 1.6e-103 380.9 552 43.5
MD13G1167900 Malus domestica HOM05D005283 ORTHO05D006769 1.1e-102 378.3 550 43.3
MD08G1066800 Malus domestica HOM05D005283 ORTHO05D006769 1.2e-101 374.8 548 42.5
Prupe.1G135400 Prunus persica HOM05D005283 ORTHO05D006769 3.4e-101 373.2 549 42.1
PSO170G5664 Papaver somniferum HOM05D005283 ORTHO05D006769 3.8e-100 369.8 549 43.0
QL06p009017 Quercus lobata HOM05D005283 ORTHO05D006769 1.1e-99 368.2 549 42.3
RcHm_v2.0_Chr4g0422381 Rosa chinensis HOM05D005283 ORTHO05D006769 7.2e-99 365.5 549 42.1
Dinv44377 Davidia involucrata HOM05D005283 ORTHO05D006769 4.6e-98 362.8 548 42.3
PSO210G5109 Papaver somniferum HOM05D005283 ORTHO05D006769 4.6e-98 362.8 546 42.7
Sabra10G0008900 Salix brachista HOM05D005283 ORTHO05D006769 1.8e-97 360.9 564 42.2
FAN12G0573 Fragaria x ananassa HOM05D005283 ORTHO05D006769 3.9e-97 359.8 547 40.6
FAN12G1245 Fragaria x ananassa HOM05D005283 ORTHO05D006769 5.1e-97 359.4 547 40.6
Ciclev10004285m.g Citrus clementina HOM05D005283 ORTHO05D006769 8.8e-97 358.6 557 40.9
CANSAT78G0446 Cannabis sativa HOM05D005283 ORTHO05D006769 2.0e-96 357.5 545 40.4
FAN17G2169 Fragaria x ananassa HOM05D005283 ORTHO05D006769 2.0e-96 357.5 561 40.6
FvH4_4g18240 Fragaria vesca HOM05D005283 ORTHO05D006769 9.7e-96 355.1 547 40.4
CSS0043341 Camellia sinensis var. sinensis HOM05D005283 ORTHO05D006769 1.7e-95 354.4 555 41.4
Potri.010G014000 Populus trichocarpa HOM05D005283 ORTHO05D006769 1.7e-95 354.4 559 41.7
TWI09G0775 Tripterygium wilfordii HOM05D005283 ORTHO05D006769 1.7e-95 354.4 547 41.0
Cfa015392 Carpinus fangiana HOM05D005283 ORTHO05D006769 6.3e-95 352.4 554 41.5
Dinv29746 Davidia involucrata HOM05D005283 ORTHO05D006769 6.3e-95 352.4 552 41.3
Thecc.04G285400 Theobroma cacao HOM05D005283 ORTHO05D006769 1.1e-94 351.7 549 40.8
TWI53G1858 Tripterygium wilfordii HOM05D005283 ORTHO05D006769 1.1e-94 351.7 549 41.5
MELO3C006668.2 Cucumis melo HOM05D005283 ORTHO05D006769 5.3e-94 349.4 550 41.5
CsaV3_3G014700 Cucumis sativus L. HOM05D005283 ORTHO05D006769 9.1e-94 348.6 550 41.1
Manes.03G195900 Manihot esculenta HOM05D005283 ORTHO05D006769 1.2e-93 348.2 558 41.6
Haze_01194 Corylus avellana HOM05D005283 ORTHO05D006769 2.0e-93 347.4 554 41.2
Duzib151G1199 Durio zibethinus HOM05D005283 ORTHO05D006769 3.4e-93 346.7 544 40.6
HPP92_002145 Vanilla planifolia HOM05D005283 ORTHO05D006769 1.3e-92 344.7 546 42.1
Glyma.07G247100 Glycine max HOM05D005283 ORTHO05D006769 3.8e-92 343.2 560 40.0
Glyma.17G026900 Glycine max HOM05D005283 ORTHO05D006769 6.5e-92 342.4 552 40.0
vmacro08159 Vaccinium macrocarpon HOM05D005283 ORTHO05D006769 1.1e-91 341.7 550 41.1
Cc03_g01850 Coffea canephora HOM05D005283 ORTHO05D006769 4.2e-91 339.7 557 40.2
Oeu029706.1 Olea europaea HOM05D005283 ORTHO05D000116 4.2e-91 339.7 542 39.9
arahy.Tifrunner.gnm1.ann1.PZAP36 Arachis hypogaea HOM05D005283 ORTHO05D006769 1.2e-90 338.2 547 40.8
arahy.Tifrunner.gnm1.ann1.Z6JJZG Arachis hypogaea HOM05D005283 ORTHO05D006769 1.6e-90 337.8 545 40.7
ClCG05G006140 Citrullus lanatus HOM05D005283 ORTHO05D006769 1.6e-90 337.8 558 41.0
PGR031G1610 Punica granatum HOM05D005283 ORTHO05D006769 2.7e-90 337.0 557 41.7
Hma1.2p1_1185F.1_g265090 Hydrangea macrophylla HOM05D005283 ORTHO05D006769 3.9e-89 333.2 546 40.3
Peaxi162Scf01123g00233 Petunia axillaris HOM05D005283 ORTHO05D006769 3.9e-89 333.2 555 40.9
CiPaw.01G148000 Carya illinoinensis HOM05D005283 ORTHO05D006769 6.7e-89 332.4 558 39.4
Rhsim04G0223000 Rhododendron simsii HOM05D005283 ORTHO05D006769 6.7e-89 332.4 553 40.5
Migut.G00154 Erythranthe guttata HOM05D005283 ORTHO05D006769 1.1e-88 331.6 547 41.5
Phvul.003G105900 Phaseolus vulgaris HOM05D005283 ORTHO05D006769 3.3e-88 330.1 555 39.5
Eucgr.B01324 Eucalyptus grandis HOM05D005283 ORTHO05D006769 4.4e-88 329.7 545 39.8
VMungo1215G0467 Vigna mungo HOM05D005283 ORTHO05D006769 1.3e-87 328.2 553 38.9
Lalb_Chr18g0051671 Lupinus albus HOM05D005283 ORTHO05D006769 2.2e-87 327.4 552 39.1
MSTRG.3910 Avicennia marina HOM05D005283 ORTHO05D006769 6.3e-87 325.9 551 38.5
DCAR_027073 Daucus carota HOM05D005283 ORTHO05D006769 3.1e-86 323.6 556 38.8
Atru.BG.90.p Acer truncatum HOM05D005283 ORTHO05D006769 1.2e-85 321.6 355 49.0
Ca_21491_v3 Cicer arietinum L. HOM05D005283 ORTHO05D006769 1.2e-85 321.6 552 39.7
Sed0007600 Sechium edule HOM05D005283 ORTHO05D006769 1.2e-85 321.6 546 38.5
HanXRQChr13g0411191 Helianthus annuus HOM05D005283 ORTHO05D006769 7.7e-85 318.9 541 41.0
CAN.G185.38 Capsicum annuum HOM05D005283 ORTHO05D006769 2.2e-84 317.4 556 38.5
Solyc01g080620.3 Solanum lycopersicum HOM05D005283 ORTHO05D006769 2.9e-84 317.0 554 40.4
Nitab4.5_0001120g0020 Nicotiana tabacum HOM05D005283 ORTHO05D006769 6.5e-84 315.8 556 39.6
Sopen01g032430 Solanum pennellii HOM05D005283 ORTHO05D006769 1.1e-83 315.1 554 40.3
Nitab4.5_0000059g0420 Nicotiana tabacum HOM05D005283 ORTHO05D006769 1.9e-83 314.3 559 39.9
Lj4g0026758 Lotus japonicus HOM05D005283 ORTHO05D006769 4.2e-83 313.2 547 37.5
Medtr4g119960 Medicago truncatula HOM05D005283 ORTHO05D006769 9.4e-83 312.0 556 39.6
Os01g0932600 Oryza sativa ssp. japonica HOM05D005283 ORTHO05D006769 4.7e-82 309.7 544 38.8
Gorai.005G060600 Gossypium raimondii HOM05D005283 ORTHO05D006769 8.0e-82 308.9 545 38.2
ECA240G0403 Erigeron canadensis HOM05D005283 ORTHO05D006769 1.0e-81 308.5 546 39.6
Gohir.A02G049600 Gossypium hirsutum HOM05D005283 ORTHO05D006769 1.0e-81 308.5 545 37.8
Psat4g027360 Pisum sativum HOM05D005283 ORTHO05D006769 1.8e-81 307.8 545 39.1
Gohir.D02G054700 Gossypium hirsutum HOM05D005283 ORTHO05D006769 3.0e-81 307.0 546 37.7
SGA_v2.0_scaffold18G08298 Striga asiatica HOM05D005283 ORTHO05D006769 4.0e-81 306.6 559 37.7
AUR62041505 Chenopodium quinoa HOM05D005283 ORTHO05D006769 7.5e-80 302.4 547 39.1
EL10Ac3g06605 Beta vulgaris HOM05D005283 ORTHO05D006769 9.7e-80 302.0 550 38.7
Zm00001eb142310 Zea mays HOM05D005283 ORTHO05D006769 7.0e-78 295.8 541 38.3
Lsat_1_v5_gn_5_54040 Lactuca sativa HOM05D005283 ORTHO05D006769 1.2e-77 295.0 562 36.8
CDE05G1280 Ceratophyllum demersum HOM05D005283 ORTHO05D006769 1.6e-77 294.7 554 37.5
THA.LOC104820270 Tarenaya hassleriana HOM05D005283 ORTHO05D006769 4.5e-77 293.1 549 38.1
Zm00001eb363540 Zea mays HOM05D005283 ORTHO05D006769 4.5e-77 293.1 540 38.5
TPR.G3193 Trifolium pratense HOM05D005283 ORTHO05D006769 2.2e-76 290.8 616 34.6
AT4G15840 Arabidopsis thaliana HOM05D005283 ORTHO05D006769 6.1e-74 282.7 560 37.5
Hund20553 Selenicereus undatus HOM05D005283 ORTHO05D006769 3.4e-72 276.9 544 36.0
AL7G39450 Arabidopsis lyrata HOM05D005283 ORTHO05D006769 1.3e-71 275.0 544 36.9
A03p49360 Brassica napus HOM05D005283 ORTHO05D006769 1.7e-71 274.6 544 37.9
Sp7g14240 Schrenkiella parvula HOM05D005283 ORTHO05D006769 1.7e-71 274.6 545 37.4
Carub.0007s2581 Capsella rubella HOM05D005283 ORTHO05D006769 3.7e-71 273.5 544 37.3
BraA03t14037Z Brassica rapa HOM05D005283 ORTHO05D006769 6.3e-71 272.7 544 37.5
Sc25g0004780 Simmondsia chinensis HOM05D005283 ORTHO05D006769 6.3e-71 272.7 546 36.3
Pp3c6_10590 Physcomitrium patens HOM05D005283 ORTHO05D006769 2.4e-70 270.8 590 33.7
Thhalv10024402m.g Eutrema salsugineum HOM05D005283 ORTHO05D006769 9.1e-70 268.9 546 35.9
Ah.13g074630 Amaranthus hybridus HOM05D005283 ORTHO05D006769 3.5e-69 266.9 556 35.4
BcaC06g32968 Brassica carinata HOM05D005283 ORTHO05D006769 5.9e-69 266.2 542 36.7
C07p47430 Brassica napus HOM05D005283 ORTHO05D006769 1.3e-68 265.0 544 37.7
BolC7t45270H Brassica oleracea HOM05D005283 ORTHO05D006769 1.3e-68 265.0 544 37.7
Cpa.g.sc66.36 Carica papaya HOM05D005283 ORTHO05D006769 2.2e-68 264.2 478 38.1
AUR62042850 Chenopodium quinoa HOM05D005283 ORTHO05D006769 8.5e-68 262.3 470 40.2
BcaC06g33444 Brassica carinata HOM05D005283 ORTHO05D006769 1.1e-67 261.9 543 37.2
Pp3c5_16090 Physcomitrium patens HOM05D005283 ORTHO05D006769 1.9e-67 261.2 605 34.2
TAR633G2729 Trochodendron aralioides HOM05D005283 ORTHO05D006769 5.5e-67 259.6 273 49.8
CARHR290370 Cardamine hirsuta HOM05D005283 ORTHO05D006769 1.5e-64 251.5 547 35.6
Actinidia40275 Actinidia chinensis HOM05D005283 ORTHO05D006769 6.3e-63 246.1 263 50.2
Pp3c16_9230 Physcomitrium patens HOM05D005283 ORTHO05D006769 1.0e-60 238.8 592 33.1
CDE11G0961 Ceratophyllum demersum HOM05D005283 ORTHO05D006769 2.8e-58 230.7 540 33.0
Atru.chr4.2851 Acer truncatum HOM05D005283 ORTHO05D006769 9.2e-54 215.7 234 48.3
Lj6A677G73 Lonicera japonica HOM05D005283 ORTHO05D006769 2.1e-50 204.5 265 46.0
unitig_748.g8730 Utricularia gibba HOM05D005283 ORTHO05D006769 5.2e-49 199.9 266 44.4
GSVIVG01017732001 Vitis vinifera HOM05D005283 ORTHO05D006769 8.9e-49 199.1 344 40.1
Hma1.2p1_2906F.1_g330120 Hydrangea macrophylla HOM05D005283 ORTHO05D006769 1.4e-41 175.3 461 34.1
COL.COLO4_13862 Corchorus olitorius HOM05D005283 ORTHO05D006769 6.4e-31 139.8 149 47.7
Pp3c20_17000 Physcomitrium patens HOM05D005283 ORTHO05D006769 6.6e-20 103.2 236 34.3
TAR633G1039 Trochodendron aralioides HOM05D005283 ORTHO05D006769 1.5e-11 75.5 121 41.3
Lj6C677T9 Lonicera japonica HOM05D005283 ORTHO05D006769 3.7e-10 70.9 244 30.3
AUR62006322 Chenopodium quinoa HOM05D007078 ORTHO05D008745 5.3e-09 67.0 70 54.3
unitig_748.g8731 Utricularia gibba HOM05D005283 ORTHO05D006769 1.7e-07 62.0 95 44.2
Actinidia40274 Actinidia chinensis HOM05D005283 ORTHO05D006769 8.4e-07 59.7 238 28.6
AUR62005650 Chenopodium quinoa HOM05D002461 ORTHO05D000898 5.5e-06 57.0 55 54.5
AUR62010442 Chenopodium quinoa HOM05D002461 ORTHO05D000898 5.5e-06 57.0 55 54.5
AUR62011828 Chenopodium quinoa HOM05D002461 ORTHO05D000898 5.5e-06 57.0 55 54.5
AUR62024534 Chenopodium quinoa HOM05D002461 ORTHO05D000898 5.5e-06 57.0 55 54.5
AUR62024696 Chenopodium quinoa HOM05D002461 ORTHO05D000898 5.5e-06 57.0 55 54.5
AUR62029074 Chenopodium quinoa HOM05D002461 ORTHO05D000898 5.5e-06 57.0 55 54.5
AUR62031767 Chenopodium quinoa HOM05D002461 ORTHO05D000898 5.5e-06 57.0 55 54.5
AUR62033912 Chenopodium quinoa HOM05D002461 ORTHO05D000898 5.5e-06 57.0 55 54.5
AUR62035885 Chenopodium quinoa HOM05D002461 ORTHO05D000898 5.5e-06 57.0 55 54.5
AUR62035966 Chenopodium quinoa HOM05D002461 ORTHO05D000898 5.5e-06 57.0 55 54.5
AUR62038887 Chenopodium quinoa HOM05D002461 ORTHO05D000898 5.5e-06 57.0 55 54.5
AUR62002595 Chenopodium quinoa HOM05D002461 ORTHO05D000898 7.1e-06 56.6 55 54.5


User provided reference genes

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