Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_38032 Sequoiadendron giganteum HOM05D004071 ORTHO05D004501 2.7e-170 602.1 341 100.0
Cfa007968 Carpinus fangiana HOM05D004071 ORTHO05D004501 6.4e-111 404.8 338 60.7
Cc07_g04980 Coffea canephora HOM05D004071 ORTHO05D004501 6.4e-111 404.8 339 61.7
TAR622G0876 Trochodendron aralioides HOM05D004071 ORTHO05D004501 8.4e-111 404.4 337 60.2
COL.COLO4_04619 Corchorus olitorius HOM05D004071 ORTHO05D004501 1.1e-110 404.1 337 59.9
Gorai.001G082400 Gossypium raimondii HOM05D004071 ORTHO05D004501 3.5e-109 399.1 338 56.2
MD17G1072900 Malus domestica HOM05D004071 ORTHO05D004501 7.9e-109 397.9 335 57.6
Thecc.04G143800 Theobroma cacao HOM05D004071 ORTHO05D004501 7.9e-109 397.9 337 60.2
Nn3g17651 Nelumbo nucifera HOM05D004071 ORTHO05D004501 1.0e-108 397.5 337 59.1
CiPaw.04G003700 Carya illinoinensis HOM05D004071 ORTHO05D004501 1.7e-108 396.7 335 58.8
Ciclev10012116m.g Citrus clementina HOM05D004071 ORTHO05D004501 6.6e-108 394.8 335 55.2
Gorai.001G203600 Gossypium raimondii HOM05D004071 ORTHO05D004501 1.1e-107 394.0 337 59.6
Migut.K00863 Erythranthe guttata HOM05D004071 ORTHO05D004501 1.9e-107 393.3 335 57.3
PSO063G1546 Papaver somniferum HOM05D004071 ORTHO05D004501 1.9e-107 393.3 338 65.7
Gohir.A07G176100 Gossypium hirsutum HOM05D004071 ORTHO05D004501 3.3e-107 392.5 337 59.3
PSO782G5396 Papaver somniferum HOM05D004071 ORTHO05D004501 4.3e-107 392.1 339 63.4
Gohir.D07G183200 Gossypium hirsutum HOM05D004071 ORTHO05D004501 5.6e-107 391.7 337 58.8
Prupe.3G241500 Prunus persica HOM05D004071 ORTHO05D004501 5.6e-107 391.7 335 55.8
Gohir.A07G073300 Gossypium hirsutum HOM05D004071 ORTHO05D004501 1.6e-106 390.2 338 54.1
HanXRQChr09g0263441 Helianthus annuus HOM05D004071 ORTHO05D004501 1.6e-106 390.2 337 63.5
MD09G1082200 Malus domestica HOM05D004071 ORTHO05D004501 1.6e-106 390.2 335 57.0
Oeu032872.2 Olea europaea HOM05D004071 ORTHO05D004501 1.6e-106 390.2 336 55.7
CSS0015718 Camellia sinensis var. sinensis HOM05D004071 ORTHO05D004501 4.8e-106 388.7 335 56.1
CAN.G153.14 Capsicum annuum HOM05D004071 ORTHO05D004501 4.8e-106 388.7 341 60.1
Peaxi162Scf01056g00238 Petunia axillaris HOM05D004071 ORTHO05D004501 4.8e-106 388.7 337 59.3
Gohir.D07G078000 Gossypium hirsutum HOM05D004071 ORTHO05D004501 6.2e-106 388.3 354 53.7
Hma1.2p1_0550F.1_g177140 Hydrangea macrophylla HOM05D004071 ORTHO05D004501 6.2e-106 388.3 335 57.9
CiPaw.03G006000 Carya illinoinensis HOM05D004071 ORTHO05D004501 8.1e-106 387.9 334 60.5
Migut.H00537 Erythranthe guttata HOM05D004071 ORTHO05D004501 8.1e-106 387.9 340 62.9
SGA_v2.0_scaffold204G41658 Striga asiatica HOM05D004071 ORTHO05D004501 8.1e-106 387.9 337 62.3
CsaV3_5G039030 Cucumis sativus L. HOM05D004071 ORTHO05D004501 1.4e-105 387.1 337 62.3
Duzib268G0320 Durio zibethinus HOM05D004071 ORTHO05D004501 1.8e-105 386.7 337 63.2
MBI16_g36053_MAGBIO Magnolia biondii HOM05D004071 ORTHO05D004501 2.4e-105 386.3 367 52.9
Atru.chr10.1868 Acer truncatum HOM05D004071 ORTHO05D004501 3.1e-105 386.0 337 54.6
Lsat_1_v5_gn_2_86560 Lactuca sativa HOM05D004071 ORTHO05D004501 3.1e-105 386.0 334 57.8
Dinv34868 Davidia involucrata HOM05D004071 ORTHO05D004501 5.3e-105 385.2 335 63.9
Oeu049330.1 Olea europaea HOM05D004071 ORTHO05D004501 6.9e-105 384.8 335 54.3
Cpa.g.sc179.42 Carica papaya HOM05D004071 ORTHO05D004501 9.0e-105 384.4 335 57.0
Potri.004G104900 Populus trichocarpa HOM05D004071 ORTHO05D004501 9.0e-105 384.4 337 55.5
SalBow1G4702 Salvia bowleyana HOM05D004071 ORTHO05D004501 9.0e-105 384.4 340 60.0
TAR629G1013 Trochodendron aralioides HOM05D004071 ORTHO05D004501 2.0e-104 383.3 337 61.4
CANSAT64G0921 Cannabis sativa HOM05D004071 ORTHO05D004501 4.5e-104 382.1 337 54.9
FvH4_6g45520 Fragaria vesca HOM05D004071 ORTHO05D004501 7.6e-104 381.3 335 63.3
SalBow1G4945 Salvia bowleyana HOM05D004071 ORTHO05D004501 7.6e-104 381.3 340 59.7
Aqoxy3G00414 Aquilegia oxysepala HOM05D004071 ORTHO05D004501 9.9e-104 380.9 334 56.0
ClCG11G005270 Citrullus lanatus HOM05D004071 ORTHO05D004501 9.9e-104 380.9 337 62.9
EL10Ac2g04623 Beta vulgaris HOM05D004071 ORTHO05D004501 1.3e-103 380.6 336 61.0
Lj4A130T17 Lonicera japonica HOM05D004071 ORTHO05D004501 2.2e-103 379.8 339 64.3
Sed0017773 Sechium edule HOM05D004071 ORTHO05D004501 2.2e-103 379.8 336 58.9
ECA232G0981 Erigeron canadensis HOM05D004071 ORTHO05D004501 4.9e-103 378.6 335 63.0
MELO3C022067.2 Cucumis melo HOM05D004071 ORTHO05D004501 8.4e-103 377.9 338 58.6
Oeu025120.1 Olea europaea HOM05D004071 ORTHO05D004501 8.4e-103 377.9 336 58.9
GSVIVG01036463001 Vitis vinifera HOM05D004071 ORTHO05D004501 8.4e-103 377.9 335 64.8
RcHm_v2.0_Chr2g0163461 Rosa chinensis HOM05D004071 ORTHO05D004501 2.4e-102 376.3 339 63.4
PGSC0003DMG400018768 Solanum tuberosum HOM05D004071 ORTHO05D004501 3.2e-102 375.9 340 58.2
FAN05G3345 Fragaria x ananassa HOM05D004071 ORTHO05D004501 4.2e-102 375.6 335 63.9
Gohir.D08G047900 Gossypium hirsutum HOM05D004071 ORTHO05D004501 4.2e-102 375.6 335 61.8
Actinidia26308 Actinidia chinensis HOM05D004071 ORTHO05D004501 7.1e-102 374.8 335 62.4
FAN14G5468 Fragaria x ananassa HOM05D000085 ORTHO05D004501 7.1e-102 374.8 335 63.3
FAN02G1076 Fragaria x ananassa HOM05D000085 ORTHO05D004501 9.3e-102 374.4 335 63.3
FAN09G0395 Fragaria x ananassa HOM05D000085 ORTHO05D004501 9.3e-102 374.4 335 55.2
Lsat_1_v5_gn_4_175840 Lactuca sativa HOM05D004071 ORTHO05D004501 9.3e-102 374.4 338 62.7
DCAR_007521 Daucus carota HOM05D000912 ORTHO05D004501 2.7e-101 372.9 335 52.5
Gohir.A08G037600 Gossypium hirsutum HOM05D004071 ORTHO05D004501 4.6e-101 372.1 335 61.2
Solyc03g045090.3 Solanum lycopersicum HOM05D004071 ORTHO05D004501 4.6e-101 372.1 339 59.6
Gorai.004G047400 Gossypium raimondii HOM05D004071 ORTHO05D004501 6.0e-101 371.7 335 61.8
Ca_14084_v3 Cicer arietinum L. HOM05D004071 ORTHO05D004501 7.9e-101 371.3 339 57.2
TWI74G0934 Tripterygium wilfordii HOM05D004071 ORTHO05D004501 7.9e-101 371.3 336 65.5
Sopen03g009550 Solanum pennellii HOM05D004071 ORTHO05D004501 2.3e-100 369.8 339 60.8
Lj2g0019369 Lotus japonicus HOM05D004071 ORTHO05D004501 3.0e-100 369.4 338 53.3
arahy.Tifrunner.gnm1.ann1.85GVTZ Arachis hypogaea HOM05D004071 ORTHO05D004501 3.9e-100 369.0 336 52.4
Rhsim08G0080100 Rhododendron simsii HOM05D004071 ORTHO05D004501 3.9e-100 369.0 335 57.3
arahy.Tifrunner.gnm1.ann1.SG5ZZ4 Arachis hypogaea HOM05D004071 ORTHO05D004501 5.1e-100 368.6 337 57.6
Psat1g062200 Pisum sativum HOM05D004071 ORTHO05D004501 5.1e-100 368.6 339 54.0
arahy.Tifrunner.gnm1.ann1.UUQR92 Arachis hypogaea HOM05D004071 ORTHO05D004501 1.1e-99 367.5 337 57.0
CARHR076390 Cardamine hirsuta HOM05D004071 ORTHO05D004501 1.5e-99 367.1 337 56.7
MSTRG.23829 Avicennia marina HOM05D004071 ORTHO05D004501 1.9e-99 366.7 339 55.5
PGR042G1023 Punica granatum HOM05D004071 ORTHO05D004501 2.5e-99 366.3 335 56.1
Medtr6g016780 Medicago truncatula HOM05D004071 ORTHO05D004501 3.3e-99 365.9 340 55.9
TPR.G9685 Trifolium pratense HOM05D004071 ORTHO05D004501 3.3e-99 365.9 338 51.5
AUR62008952 Chenopodium quinoa HOM05D004071 ORTHO05D004501 4.3e-99 365.5 334 57.2
Manes.02G065500 Manihot esculenta HOM05D004071 ORTHO05D004501 5.6e-99 365.2 339 54.9
Phvul.004G073300 Phaseolus vulgaris HOM05D004071 ORTHO05D004501 5.6e-99 365.2 336 51.2
Glyma.13G047900 Glycine max HOM05D004071 ORTHO05D004501 9.6e-99 364.4 339 51.3
Ah.16g102220 Amaranthus hybridus HOM05D004071 ORTHO05D004501 1.3e-98 364.0 340 60.9
HPP92_011599 Vanilla planifolia HOM05D004071 ORTHO05D004501 2.8e-98 362.8 334 51.8
Hund13742 Selenicereus undatus HOM05D004071 ORTHO05D004501 2.4e-97 359.8 343 53.1
HanXRQChr07g0200191 Helianthus annuus HOM05D004071 ORTHO05D004501 3.1e-97 359.4 337 56.7
THA.LOC104827150 Tarenaya hassleriana HOM05D004071 ORTHO05D004501 3.1e-97 359.4 336 54.8
Os01g0604700 Oryza sativa ssp. japonica HOM05D004071 ORTHO05D004501 6.9e-97 358.2 336 51.2
Zm00001eb161490 Zea mays HOM05D004071 ORTHO05D004501 2.6e-96 356.3 336 51.2
SGA_v2.0_scaffold150G36618 Striga asiatica HOM05D002617 ORTHO05D009035 5.8e-96 355.1 340 54.7
VMungo0464G1781 Vigna mungo HOM05D004071 ORTHO05D004501 1.0e-95 354.4 336 58.6
CDE08G1388 Ceratophyllum demersum HOM05D004071 ORTHO05D004501 1.3e-95 354.0 338 51.5
Os05g0589000 Oryza sativa ssp. japonica HOM05D004071 ORTHO05D004501 4.9e-95 352.1 335 54.6
Zm00001eb297500 Zea mays HOM05D004071 ORTHO05D004501 9.3e-94 347.8 339 56.9
Sed0022702 Sechium edule HOM05D004071 ORTHO05D004501 2.1e-93 346.7 324 52.8
Rhsim10G0064500 Rhododendron simsii HOM05D004071 ORTHO05D004501 7.9e-93 344.7 335 53.4
CDE06G1497 Ceratophyllum demersum HOM05D004071 ORTHO05D004501 1.3e-92 344.0 338 56.5
Duzib133G0960 Durio zibethinus HOM05D004071 ORTHO05D004501 3.9e-92 342.4 337 54.0
AUR62014550 Chenopodium quinoa HOM05D004071 ORTHO05D004501 1.5e-91 340.5 348 52.9
HPP92_003788 Vanilla planifolia HOM05D004071 ORTHO05D004501 1.5e-91 340.5 334 49.7
Lalb_Chr17g0336551 Lupinus albus HOM05D004071 ORTHO05D004501 2.5e-91 339.7 339 57.8
Actinidia36304 Actinidia chinensis HOM05D004071 ORTHO05D004501 1.6e-90 337.0 335 49.0
PSO017G6828 Papaver somniferum HOM05D004071 ORTHO05D004501 1.6e-90 337.0 335 48.7
Potri.017G110600 Populus trichocarpa HOM05D004071 ORTHO05D004501 1.6e-90 337.0 337 54.9
unitig_32.g10761 Utricularia gibba HOM05D004071 ORTHO05D004501 2.8e-90 336.3 335 56.1
PGSC0003DMG400010091 Solanum tuberosum HOM05D004071 ORTHO05D004501 4.8e-90 335.5 340 51.8
Nn4g23653 Nelumbo nucifera HOM05D004071 ORTHO05D004501 8.2e-90 334.7 301 64.5
Carub.0003s0151 Capsella rubella HOM05D004071 ORTHO05D004501 1.1e-89 334.3 340 51.8
Nitab4.5_0004420g0040 Nicotiana tabacum HOM05D004071 ORTHO05D004501 3.1e-89 332.8 342 55.8
BcaB04g21412 Brassica carinata HOM05D004071 ORTHO05D004501 4.1e-89 332.4 337 51.3
Mapoly0013s0171 Marchantia polymorpha HOM05D004071 ORTHO05D004501 4.1e-89 332.4 342 48.2
BcaC09g47699 Brassica carinata HOM05D004071 ORTHO05D004501 5.3e-89 332.0 335 48.1
AagrBONN_evm.TU.Sc2ySwM_117.1813 Anthoceros agrestis HOM05D004071 ORTHO05D004501 9.0e-89 331.3 338 48.5
TWI77G0983 Tripterygium wilfordii HOM05D004071 ORTHO05D004501 2.6e-88 329.7 336 50.0
BcaC05g30354 Brassica carinata HOM05D004071 ORTHO05D004501 4.5e-88 328.9 335 47.5
unitig_62.g23397 Utricularia gibba HOM05D004071 ORTHO05D004501 1.0e-87 327.8 340 52.4
Thhalv10021061m.g Eutrema salsugineum HOM05D004071 ORTHO05D004501 1.7e-87 327.0 338 52.4
Aa31LG5G12930 Aethionema arabicum HOM05D004071 ORTHO05D004501 2.2e-87 326.6 337 51.3
AT3G02420 Arabidopsis thaliana HOM05D004071 ORTHO05D004501 2.2e-87 326.6 340 51.2
PSO478G0222 Papaver somniferum HOM05D004071 ORTHO05D004501 1.1e-86 324.3 336 46.7
Hund16109 Selenicereus undatus HOM05D004071 ORTHO05D004501 1.1e-86 324.3 341 52.5
Sp3g01460 Schrenkiella parvula HOM05D004071 ORTHO05D004501 1.9e-86 323.6 337 49.3
Hma1.2p1_0136F.1_g061955 Hydrangea macrophylla HOM05D004071 ORTHO05D004501 3.2e-86 322.8 301 52.8
SMO164G0101 Selaginella moellendorffii HOM05D004071 ORTHO05D004501 4.2e-86 322.4 339 51.0
BraA05t23141Z Brassica rapa HOM05D004071 ORTHO05D004501 5.5e-86 322.0 335 48.1
vmacro18101 Vaccinium macrocarpon HOM05D004071 ORTHO05D004501 9.3e-86 321.2 335 47.2
Sabra04G0076900 Salix brachista HOM05D004071 ORTHO05D004501 1.8e-84 317.0 436 40.8
ClCG05G012000 Citrullus lanatus HOM05D004071 ORTHO05D004501 2.5e-83 313.2 336 44.9
ATR0730G004 Amborella trichopoda HOM05D004071 ORTHO05D004501 2.2e-82 310.1 278 65.5
Pp3c7_9290 Physcomitrium patens HOM05D004071 ORTHO05D004501 2.8e-82 309.7 336 45.2
CSS0021599 Camellia sinensis var. sinensis HOM05D004071 ORTHO05D004501 1.4e-81 307.4 231 61.0
Sed0014814 Sechium edule HOM05D004071 ORTHO05D004501 1.8e-81 307.0 334 43.7
PGR004G2426 Punica granatum HOM05D004071 ORTHO05D004501 1.3e-79 300.8 287 55.7
vmacro05581 Vaccinium macrocarpon HOM05D004071 ORTHO05D004501 3.8e-79 299.3 419 48.7
TAR371G1199 Trochodendron aralioides HOM05D004071 ORTHO05D004501 4.2e-78 295.8 297 48.5
Nitab4.5_0009272g0060 Nicotiana tabacum HOM05D004071 ORTHO05D004501 4.4e-75 285.8 349 49.6
Glyma.19G043700 Glycine max HOM05D004071 ORTHO05D004501 1.3e-74 284.3 293 52.9
Peaxi162Scf00479g00310 Petunia axillaris HOM05D004071 ORTHO05D004501 5.0e-71 272.3 295 57.6
AL3G11710 Arabidopsis lyrata HOM05D004071 ORTHO05D004501 1.9e-70 270.4 294 45.9
BolC5t35082H Brassica oleracea HOM05D004071 ORTHO05D007018 1.1e-67 261.2 289 44.3
Eucgr.I02122 Eucalyptus grandis HOM05D004071 ORTHO05D004501 1.1e-65 254.6 248 53.6
QL02p053393 Quercus lobata HOM05D004071 ORTHO05D004501 5.3e-65 252.3 239 56.9
Sc10g0001400 Simmondsia chinensis HOM05D004071 ORTHO05D004501 2.2e-63 246.9 239 53.1
Zm00001eb158750 Zea mays HOM05D004071 ORTHO05D004501 3.8e-63 246.1 225 51.1
C09p75710 Brassica napus HOM05D002308 ORTHO05D002535 1.9e-62 243.8 275 43.6
Gohir.A13G091200 Gossypium hirsutum HOM05D004071 ORTHO05D004501 2.5e-62 243.4 221 54.3
A05p45210 Brassica napus HOM05D002308 ORTHO05D007018 9.4e-62 241.5 275 43.3
Dinv33918 Davidia involucrata HOM05D004071 ORTHO05D004501 1.4e-60 237.7 183 61.7
Nitab4.5_0000612g0160 Nicotiana tabacum HOM05D004071 ORTHO05D004501 1.8e-60 237.3 335 40.0
arahy.Tifrunner.gnm1.ann1.2VHL38 Arachis hypogaea HOM05D004071 ORTHO05D004501 7.5e-59 231.9 238 47.1
Os01g0641700 Oryza sativa ssp. japonica HOM05D004071 ORTHO05D004501 7.5e-59 231.9 230 50.0
Lj7A9T84 Lonicera japonica HOM05D004071 ORTHO05D004501 3.5e-56 223.0 223 49.3
BraSC141t45626Z Brassica rapa HOM05D004071 ORTHO05D004501 9.4e-54 214.9 237 43.5
CDE05G2628 Ceratophyllum demersum HOM05D004071 ORTHO05D004501 4.0e-52 209.5 227 45.8
BolC1t05906H Brassica oleracea HOM05D004071 ORTHO05D004501 6.8e-52 208.8 240 42.9
BNapus_Darmor_BZH_scaffold_208p00070 Brassica napus HOM05D004071 ORTHO05D004501 2.0e-51 207.2 237 49.4
DCAR_010977 Daucus carota HOM05D004071 ORTHO05D004501 3.4e-51 206.5 332 38.3
SHI25579 Sapria himalayana HOM05D004071 ORTHO05D004501 4.8e-50 202.6 230 46.5
TPR.G28780 Trifolium pratense HOM05D004071 ORTHO05D004501 1.1e-46 191.4 141 61.7
Nitab4.5_0003161g0040 Nicotiana tabacum HOM05D004071 ORTHO05D004501 9.8e-43 178.3 126 65.1
Gohir.A03G111050 Gossypium hirsutum HOM05D004071 ORTHO05D004501 3.0e-36 156.8 125 57.6
QL02p053385 Quercus lobata HOM05D004071 ORTHO05D004501 1.6e-32 144.4 99 67.7
Gohir.A04G081800 Gossypium hirsutum HOM05D004071 ORTHO05D004501 1.5e-30 137.9 115 56.5
Gohir.A13G168300 Gossypium hirsutum HOM05D004071 ORTHO05D004501 3.3e-30 136.7 112 56.2
unitig_52.g17623 Utricularia gibba HOM05D004071 ORTHO05D004501 4.0e-28 129.8 127 45.7
SEGI_19153 Sequoiadendron giganteum HOM05D004071 ORTHO05D004501 9.8e-27 125.2 56 100.0
CBR_g39496 Chara braunii HOM05D004071 ORTHO05D004501 9.2e-25 118.6 149 39.6
Dinv33917 Davidia involucrata HOM05D004071 ORTHO05D004501 6.0e-24 115.9 69 69.6
Actinidia17620 Actinidia chinensis HOM05D004071 ORTHO05D004501 2.8e-21 107.1 69 63.8
PRCOL_00004263 Prasinoderma coloniale HOM05D068002 ORTHO05D004501 1.2e-19 101.7 242 28.5
Cre02.g099650 Chlamydomonas reinhardtii HOM05D004071 ORTHO05D004501 1.7e-18 97.8 218 29.8
Solyc02g089780.3 Solanum lycopersicum HOM05D004071 ORTHO05D004501 3.2e-17 93.6 55 70.9
Gohir.A10G225466 Gossypium hirsutum HOM05D004071 ORTHO05D004501 8.4e-10 68.9 54 59.3
arahy.Tifrunner.gnm1.ann1.FI956K Arachis hypogaea HOM05D004071 ORTHO05D004501 2.3e-07 60.8 140 29.3
CBR_g42155 Chara braunii HOM05D004071 ORTHO05D004501 8.6e-07 58.9 63 38.1


User provided reference genes

Program Settings