Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_38009 Sequoiadendron giganteum HOM05D004231 ORTHO05D004814 1.4e-185 652.9 340 100.0
Pp3c5_14900 Physcomitrium patens HOM05D004231 ORTHO05D004814 5.7e-75 285.4 231 67.5
CDE05G2018 Ceratophyllum demersum HOM05D004231 ORTHO05D004814 2.4e-73 280.0 243 60.9
CDE05G1267 Ceratophyllum demersum HOM05D004231 ORTHO05D004814 3.1e-73 279.6 243 60.9
BcaC04g22982 Brassica carinata HOM05D004231 ORTHO05D004814 4.5e-72 275.8 242 61.2
A06p34120 Brassica napus HOM05D004231 ORTHO05D004814 4.5e-72 275.8 242 61.6
C09p13290 Brassica napus HOM05D004231 ORTHO05D004814 4.5e-72 275.8 242 61.2
BraA06t26345Z Brassica rapa HOM05D004231 ORTHO05D004814 4.5e-72 275.8 242 61.2
SGA_v2.0_scaffold36G14389 Striga asiatica HOM05D004231 ORTHO05D004814 4.5e-72 275.8 231 63.2
A09p11260 Brassica napus HOM05D004231 ORTHO05D004814 1.0e-71 274.6 242 60.7
BolC9t54222H Brassica oleracea HOM05D004231 ORTHO05D004814 1.0e-71 274.6 242 60.7
BraA09t36767Z Brassica rapa HOM05D004231 ORTHO05D004814 1.0e-71 274.6 242 60.7
BcaB07g31737 Brassica carinata HOM05D004231 ORTHO05D004814 1.3e-71 274.2 257 58.8
A07p03760 Brassica napus HOM05D004231 ORTHO05D004814 1.7e-71 273.9 242 60.3
BraA07t28164Z Brassica rapa HOM05D004231 ORTHO05D004814 1.7e-71 273.9 242 60.3
C07p06030 Brassica napus HOM05D004231 ORTHO05D004814 2.9e-71 273.1 242 59.9
Carub.0003s3121 Capsella rubella HOM05D004231 ORTHO05D004814 3.8e-71 272.7 242 60.3
SGA_v2.0_scaffold172G39001 Striga asiatica HOM05D004231 ORTHO05D004814 3.8e-71 272.7 244 59.4
BcaB03g16474 Brassica carinata HOM05D004231 ORTHO05D004814 6.5e-71 271.9 242 60.3
C03p58080 Brassica napus HOM05D004231 ORTHO05D004814 6.5e-71 271.9 242 60.3
BolC3t18081H Brassica oleracea HOM05D004231 ORTHO05D004814 6.5e-71 271.9 242 60.3
CARHR293610 Cardamine hirsuta HOM05D004231 ORTHO05D004814 6.5e-71 271.9 242 60.3
Peaxi162Scf00329g00312 Petunia axillaris HOM05D004231 ORTHO05D004814 6.5e-71 271.9 240 60.0
AL3G50130 Arabidopsis lyrata HOM05D004231 ORTHO05D004814 8.5e-71 271.6 242 60.3
BcaB03g16477 Brassica carinata HOM05D004231 ORTHO05D004814 8.5e-71 271.6 242 59.5
BcaB03g16478 Brassica carinata HOM05D004231 ORTHO05D004814 8.5e-71 271.6 242 59.5
BolC7t41016H Brassica oleracea HOM05D004231 ORTHO05D004814 8.5e-71 271.6 242 59.5
Sp3g30610 Schrenkiella parvula HOM05D004231 ORTHO05D004814 8.5e-71 271.6 242 60.3
AT2G17265 Arabidopsis thaliana HOM05D004231 ORTHO05D004814 1.4e-70 270.8 242 59.9
BcaC01g02941 Brassica carinata HOM05D004231 ORTHO05D004814 1.4e-70 270.8 242 60.3
Lsat_1_v5_gn_4_71321 Lactuca sativa HOM05D004231 ORTHO05D004814 1.4e-70 270.8 234 61.5
ATR0177G062 Amborella trichopoda HOM05D004231 ORTHO05D004814 1.9e-70 270.4 231 62.8
Mapoly0173s0009 Marchantia polymorpha HOM05D004231 ORTHO05D004814 1.9e-70 270.4 230 65.2
MSTRG.25000 Avicennia marina HOM05D004231 ORTHO05D004814 2.5e-70 270.0 231 60.6
Thhalv10022738m.g Eutrema salsugineum HOM05D004231 ORTHO05D004814 2.5e-70 270.0 242 59.9
Manes.01G017200 Manihot esculenta HOM05D004231 ORTHO05D004814 3.2e-70 269.6 233 63.1
Peaxi162Scf00362g00110 Petunia axillaris HOM05D004231 ORTHO05D004814 4.2e-70 269.2 221 63.3
CAN.G5871.1 Capsicum annuum HOM05D004231 ORTHO05D004814 9.4e-70 268.1 240 58.3
Solyc04g008760.3 Solanum lycopersicum HOM05D004231 ORTHO05D004814 1.6e-69 267.3 240 59.6
PGSC0003DMG400025309 Solanum tuberosum HOM05D004231 ORTHO05D004814 1.6e-69 267.3 240 59.6
CANSAT25G0301 Cannabis sativa HOM05D004231 ORTHO05D004814 2.1e-69 266.9 243 59.7
Prupe.8G180500 Prunus persica HOM05D004231 ORTHO05D004814 2.1e-69 266.9 242 60.7
MD10G1142000 Malus domestica HOM05D004231 ORTHO05D004814 3.6e-69 266.2 242 60.7
Sopen04g003940 Solanum pennellii HOM05D004231 ORTHO05D004814 3.6e-69 266.2 240 59.2
PSO675G1855 Papaver somniferum HOM05D004231 ORTHO05D004814 4.6e-69 265.8 234 60.3
PGR042G2635 Punica granatum HOM05D004231 ORTHO05D004814 4.6e-69 265.8 232 60.8
BcaC06g36249 Brassica carinata HOM05D004231 ORTHO05D004814 7.9e-69 265.0 233 60.5
Sabra04G0139300 Salix brachista HOM05D004231 ORTHO05D004814 7.9e-69 265.0 240 60.8
ECA233G1094 Erigeron canadensis HOM05D004231 ORTHO05D004814 1.0e-68 264.6 243 60.1
PSO541G6356 Papaver somniferum HOM05D004231 ORTHO05D004814 1.0e-68 264.6 234 59.8
Aa31LG2G14870 Aethionema arabicum HOM05D004231 ORTHO05D004814 1.4e-68 264.2 240 60.0
Dinv14175 Davidia involucrata HOM05D004231 ORTHO05D004814 1.4e-68 264.2 243 59.3
SalBow7G0905 Salvia bowleyana HOM05D004231 ORTHO05D004814 1.4e-68 264.2 231 60.6
Nn7g36283 Nelumbo nucifera HOM05D004231 ORTHO05D004814 3.9e-68 262.7 251 57.8
Nitab4.5_0008730g0040 Nicotiana tabacum HOM05D004231 ORTHO05D004814 3.9e-68 262.7 240 57.9
CBR_g2798 Chara braunii HOM05D004385 ORTHO05D005245 5.1e-68 262.3 258 57.4
Nitab4.5_0000129g0030 Nicotiana tabacum HOM05D004231 ORTHO05D004814 8.8e-68 261.5 240 57.9
Potri.004G207000 Populus trichocarpa HOM05D004231 ORTHO05D004814 8.8e-68 261.5 240 60.0
Sc08g0002160 Simmondsia chinensis HOM05D004231 ORTHO05D004814 8.8e-68 261.5 242 58.3
CSS0007201 Camellia sinensis var. sinensis HOM05D004231 ORTHO05D004814 1.1e-67 261.2 232 60.8
Ca_10777_v3 Cicer arietinum L. HOM05D004231 ORTHO05D004814 1.1e-67 261.2 231 61.5
DCAR_006270 Daucus carota HOM05D004231 ORTHO05D004814 1.1e-67 261.2 235 58.7
LjContig00081g0001175 Lotus japonicus HOM05D004231 ORTHO05D004814 1.1e-67 261.2 236 61.9
CARHR243620 Cardamine hirsuta HOM05D004231 ORTHO05D004814 1.5e-67 260.8 240 59.6
HanXRQChr16g0515121 Helianthus annuus HOM05D004231 ORTHO05D004814 1.5e-67 260.8 244 61.1
QL05p043527 Quercus lobata HOM05D004231 ORTHO05D004814 1.5e-67 260.8 241 59.8
Sed0021373 Sechium edule HOM05D004231 ORTHO05D004814 1.5e-67 260.8 241 59.3
Sed0027682 Sechium edule HOM05D004231 ORTHO05D004814 2.0e-67 260.4 232 60.3
ECA236G1252 Erigeron canadensis HOM05D000103 ORTHO05D000049 2.5e-67 260.0 243 58.8
Lalb_Chr07g0189301 Lupinus albus HOM05D004231 ORTHO05D004814 2.5e-67 260.0 232 59.9
Lalb_Chr12g0208621 Lupinus albus HOM05D004231 ORTHO05D004814 2.5e-67 260.0 236 59.7
Actinidia17992 Actinidia chinensis HOM05D004231 ORTHO05D004814 3.3e-67 259.6 243 59.3
MELO3C015708.2 Cucumis melo HOM05D004231 ORTHO05D004814 3.3e-67 259.6 232 60.8
Carub.0007s0500 Capsella rubella HOM05D004231 ORTHO05D004814 4.3e-67 259.2 242 59.5
Aqoxy1G01703 Aquilegia oxysepala HOM05D004231 ORTHO05D004814 5.7e-67 258.8 241 58.5
Migut.N00847 Erythranthe guttata HOM05D004231 ORTHO05D004814 5.7e-67 258.8 242 57.0
Hma1.2p1_0652F.1_g195880 Hydrangea macrophylla HOM05D004231 ORTHO05D004814 5.7e-67 258.8 234 59.4
Lsat_1_v5_gn_8_121420 Lactuca sativa HOM05D004231 ORTHO05D004814 5.7e-67 258.8 244 57.8
EL10Ac9g21537 Beta vulgaris HOM05D004231 ORTHO05D004814 7.4e-67 258.5 230 62.2
PSO063G5124 Papaver somniferum HOM05D004231 ORTHO05D004814 7.4e-67 258.5 231 58.0
CsaV3_7G001970 Cucumis sativus L. HOM05D004231 ORTHO05D004814 9.7e-67 258.1 232 60.3
PSO782G1111 Papaver somniferum HOM05D004231 ORTHO05D004814 9.7e-67 258.1 231 58.0
Potri.009G168400 Populus trichocarpa HOM05D004231 ORTHO05D004814 9.7e-67 258.1 240 59.6
ClCG02G003360 Citrullus lanatus HOM05D004231 ORTHO05D004814 1.3e-66 257.7 232 59.9
Oeu005953.1 Olea europaea HOM05D004231 ORTHO05D004814 1.3e-66 257.7 231 58.9
MBI18_g17319_MAGBIO Magnolia biondii HOM05D004231 ORTHO05D004814 1.7e-66 257.3 237 59.1
arahy.Tifrunner.gnm1.ann1.3XUX0K Arachis hypogaea HOM05D004231 ORTHO05D004814 2.2e-66 256.9 234 61.5
arahy.Tifrunner.gnm1.ann1.9M6UE0 Arachis hypogaea HOM05D004231 ORTHO05D004814 2.2e-66 256.9 234 61.5
Cfa005374 Carpinus fangiana HOM05D004231 ORTHO05D004814 2.2e-66 256.9 232 60.3
SMO351G0181 Selaginella moellendorffii HOM05D004231 ORTHO05D004814 2.2e-66 256.9 233 60.1
Nitab4.5_0000783g0100 Nicotiana tabacum HOM05D004231 ORTHO05D004814 2.8e-66 256.5 231 59.3
Thecc.02G146400 Theobroma cacao HOM05D004231 ORTHO05D004814 2.8e-66 256.5 240 57.1
Duzib052G0175 Durio zibethinus HOM05D004231 ORTHO05D004814 4.8e-66 255.8 240 57.1
Ciclev10028700m.g Citrus clementina HOM05D004231 ORTHO05D004814 6.3e-66 255.4 240 57.9
CiPaw.06G115200 Carya illinoinensis HOM05D004231 ORTHO05D004814 8.2e-66 255.0 232 59.5
Glyma.14G001000 Glycine max HOM05D004231 ORTHO05D004814 8.2e-66 255.0 234 61.5
Phvul.008G292300 Phaseolus vulgaris HOM05D004231 ORTHO05D004814 8.2e-66 255.0 232 61.2
Psat2g000680 Pisum sativum HOM05D004231 ORTHO05D004814 8.2e-66 255.0 238 59.2
Ah.01g009950 Amaranthus hybridus HOM05D004231 ORTHO05D004814 1.4e-65 254.2 230 61.3
CiPaw.05G093400 Carya illinoinensis HOM05D004231 ORTHO05D004814 1.4e-65 254.2 241 58.1
FAN15G0610 Fragaria x ananassa HOM05D004231 ORTHO05D004814 3.1e-65 253.1 233 60.9
Sopen01g054320 Solanum pennellii HOM05D004231 ORTHO05D004814 4.1e-65 252.7 231 58.4
unitig_0.g2083 Utricularia gibba HOM05D004231 ORTHO05D004814 4.1e-65 252.7 240 56.7
Nn2g15251 Nelumbo nucifera HOM05D004231 ORTHO05D004814 5.3e-65 252.3 234 59.0
TWI75G1214 Tripterygium wilfordii HOM05D004231 ORTHO05D004814 5.3e-65 252.3 246 56.5
AUR62013177 Chenopodium quinoa HOM05D004231 ORTHO05D004814 9.1e-65 251.5 230 59.6
FAN24G0296 Fragaria x ananassa HOM05D004231 ORTHO05D004814 9.1e-65 251.5 233 60.5
Psat2g000800 Pisum sativum HOM05D004231 ORTHO05D004814 1.5e-64 250.8 234 58.5
FAN27G2171 Fragaria x ananassa HOM05D004231 ORTHO05D004814 2.0e-64 250.4 233 60.1
PGSC0003DMG400014663 Solanum tuberosum HOM05D000109 ORTHO05D004814 2.0e-64 250.4 231 58.0
FvH4_2g16830 Fragaria vesca HOM05D004231 ORTHO05D004814 2.6e-64 250.0 233 60.1
CSS0030147 Camellia sinensis var. sinensis HOM05D004231 ORTHO05D004814 4.5e-64 249.2 246 56.5
RcHm_v2.0_Chr6g0280961 Rosa chinensis HOM05D004231 ORTHO05D004814 7.7e-64 248.4 242 58.7
TPR.G18636 Trifolium pratense HOM05D004231 ORTHO05D004814 7.7e-64 248.4 238 57.6
Cpa.g.sc60.14 Carica papaya HOM05D004231 ORTHO05D004814 2.2e-63 246.9 231 58.9
TPR.G5084 Trifolium pratense HOM05D004231 ORTHO05D004814 2.9e-63 246.5 247 55.9
RhsimUnG0022900 Rhododendron simsii HOM05D004231 ORTHO05D004814 1.1e-62 244.6 235 56.2
HPP92_007738 Vanilla planifolia HOM05D004231 ORTHO05D004814 1.9e-62 243.8 235 57.9
Medtr5g099180 Medicago truncatula HOM05D004231 ORTHO05D004814 3.2e-62 243.0 238 57.1
SHI25239 Sapria himalayana HOM05D004231 ORTHO05D004814 9.4e-62 241.5 245 53.1
Cc11_g00240 Coffea canephora HOM05D004231 ORTHO05D004814 7.9e-61 238.4 233 56.7
Gohir.A03G170800 Gossypium hirsutum HOM05D004231 ORTHO05D004814 1.7e-58 230.7 218 57.3
Gorai.005G216700 Gossypium raimondii HOM05D004231 ORTHO05D004814 4.8e-58 229.2 218 56.9
Gohir.D02G193900 Gossypium hirsutum HOM05D004231 ORTHO05D004814 6.3e-58 228.8 218 56.9
Cre02.g082250 Chlamydomonas reinhardtii HOM05D004231 ORTHO05D004814 8.2e-58 228.4 232 55.6
MBI10_g41732_MAGBIO Magnolia biondii HOM05D004231 ORTHO05D004814 2.4e-57 226.9 214 56.5
Os02g0831800 Oryza sativa ssp. japonica HOM05D004231 ORTHO05D004814 1.1e-54 218.0 239 52.3
SEGI_19463 Sequoiadendron giganteum HOM05D004231 ORTHO05D004814 6.7e-52 208.8 240 53.8
AUR62010176 Chenopodium quinoa HOM05D004231 ORTHO05D004814 4.8e-50 202.6 230 50.0
GSVIVG01023624001 Vitis vinifera HOM05D004231 ORTHO05D004814 7.7e-48 195.3 231 51.1
ATR0810G109 Amborella trichopoda HOM05D004231 ORTHO05D004814 1.1e-46 191.4 239 48.5
MBI15_g18193_MAGBIO Magnolia biondii HOM05D004231 ORTHO05D004814 6.8e-44 182.2 222 46.4
Lj9P408T30 Lonicera japonica HOM05D004231 ORTHO05D004814 4.8e-42 176.0 161 61.5
THA.LOC104807405 Tarenaya hassleriana HOM05D004231 ORTHO05D004814 2.2e-39 167.2 161 58.4
TAR625G1260 Trochodendron aralioides HOM05D004231 ORTHO05D004814 1.8e-36 157.5 152 59.9
Atru.chr5.3561 Acer truncatum HOM05D004231 ORTHO05D004814 8.3e-34 148.7 120 64.2
Cre02.g082200 Chlamydomonas reinhardtii HOM05D004231 ORTHO05D004814 5.4e-33 146.0 151 57.0
COL.COLO4_34312 Corchorus olitorius HOM05D000109 ORTHO05D000520 4.5e-32 142.9 231 40.7
Sabra09G0130700 Salix brachista HOM05D004231 ORTHO05D004814 1.1e-30 138.3 156 55.8
VMungo0331G0717 Vigna mungo HOM05D004231 ORTHO05D004814 1.2e-24 118.2 103 61.2
Atru.chr5.3560 Acer truncatum HOM05D004231 ORTHO05D004814 1.6e-24 117.9 96 61.5
TAR625G0010 Trochodendron aralioides HOM05D004231 ORTHO05D004814 1.7e-23 114.4 86 69.8
SEGI_26592 Sequoiadendron giganteum HOM05D001969 ORTHO05D009003 7.5e-19 99.0 76 72.4
VMungo0647G1050 Vigna mungo HOM05D004231 ORTHO05D004814 7.0e-17 92.4 86 58.1
SMO231G0001 Selaginella moellendorffii HOM05D004231 ORTHO05D004814 3.5e-16 90.1 82 61.0
SEGI_37911 Sequoiadendron giganteum HOM05D004231 ORTHO05D004814 3.9e-15 86.7 51 82.4
QL03p013131 Quercus lobata HOM05D004231 ORTHO05D004814 4.3e-14 83.2 78 52.6
arahy.Tifrunner.gnm1.ann1.H05BEB Arachis hypogaea HOM05D004231 ORTHO05D004814 1.6e-13 81.3 79 54.4
DCAR_011200 Daucus carota HOM05D001969 ORTHO05D009003 1.1e-12 78.6 74 45.9
QL06p003747 Quercus lobata HOM05D003236 ORTHO05D003620 1.8e-12 77.8 68 54.4
Manes.06G013500 Manihot esculenta HOM05D001969 ORTHO05D009003 3.1e-12 77.0 74 48.6
Aa31LG9G15650 Aethionema arabicum HOM05D001969 ORTHO05D009003 8.9e-12 75.5 72 43.1
Cre02.g082150 Chlamydomonas reinhardtii HOM05D004231 ORTHO05D004814 4.4e-11 73.2 67 62.7
TAR625G0853 Trochodendron aralioides HOM05D000369 ORTHO05D000253 5.8e-11 72.8 153 36.6
QL08p042586 Quercus lobata HOM05D004231 ORTHO05D004814 3.7e-10 70.1 87 43.7
BcaB08g34717 Brassica carinata HOM05D004231 ORTHO05D004814 4.9e-10 69.7 60 55.0
BcaC07g41194 Brassica carinata HOM05D001969 ORTHO05D003463 4.9e-10 69.7 87 39.1
C08p42010 Brassica napus HOM05D001969 ORTHO05D003463 4.9e-10 69.7 87 39.1
BolC8t51763H Brassica oleracea HOM05D001969 ORTHO05D003463 4.9e-10 69.7 87 39.1
THA.LOC104811178 Tarenaya hassleriana HOM05D001969 ORTHO05D009003 4.9e-10 69.7 70 44.3
MCO14G367 Micromonas commoda HOM05D004231 ORTHO05D004814 8.3e-10 68.9 211 33.6
A09p58710 Brassica napus HOM05D001969 ORTHO05D003463 2.4e-09 67.4 85 38.8
BraA09t41257Z Brassica rapa HOM05D001969 ORTHO05D003463 2.4e-09 67.4 85 38.8
Hma1.2p1_0384F.1_g141150 Hydrangea macrophylla HOM05D001969 ORTHO05D009003 2.4e-09 67.4 88 35.2
BcaB08g34941 Brassica carinata HOM05D001969 ORTHO05D003463 4.1e-09 66.6 85 37.6
Actinidia26328 Actinidia chinensis HOM05D004231 ORTHO05D004814 1.2e-08 65.1 49 59.2
AL3G54010 Arabidopsis lyrata HOM05D001969 ORTHO05D009003 1.2e-08 65.1 66 51.5
Lsat_1_v5_gn_2_3941 Lactuca sativa HOM05D001969 ORTHO05D009003 3.5e-08 63.5 67 46.3
Thhalv10001991m.g Eutrema salsugineum HOM05D001969 ORTHO05D003463 7.8e-08 62.4 74 39.2
Ciclev10017445m.g Citrus clementina HOM05D001969 ORTHO05D003463 2.3e-07 60.8 66 39.4
Aa31LG8G17650 Aethionema arabicum HOM05D001969 ORTHO05D003463 3.9e-07 60.1 64 43.8
Manes.13G150950 Manihot esculenta HOM05D001969 ORTHO05D009003 5.1e-07 59.7 40 60.0
Cc11_g01780 Coffea canephora HOM05D001969 ORTHO05D009003 5.6e-06 56.2 78 38.5
Lsat_1_v5_gn_3_137700 Lactuca sativa HOM05D001969 ORTHO05D009003 5.6e-06 56.2 68 39.7
GSVIVG01030575001 Vitis vinifera HOM05D001969 ORTHO05D009003 9.5e-06 55.5 70 40.0


User provided reference genes

Program Settings