Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_37911 Sequoiadendron giganteum HOM05D004231 ORTHO05D004814 1.0e-45 186.4 96 100.0
ATR0810G109 Amborella trichopoda HOM05D004231 ORTHO05D004814 1.4e-15 86.3 150 38.0
SEGI_38009 Sequoiadendron giganteum HOM05D004231 ORTHO05D004814 1.4e-15 86.3 51 82.4
HanXRQChr16g0515121 Helianthus annuus HOM05D004231 ORTHO05D004814 1.2e-11 73.2 50 70.0
PSO541G6356 Papaver somniferum HOM05D004231 ORTHO05D004814 1.2e-11 73.2 50 66.0
PSO675G1855 Papaver somniferum HOM05D004231 ORTHO05D004814 1.2e-11 73.2 50 66.0
ATR0177G062 Amborella trichopoda HOM05D004231 ORTHO05D004814 1.6e-11 72.8 50 70.0
PSO063G5124 Papaver somniferum HOM05D004231 ORTHO05D004814 1.6e-11 72.8 50 64.0
PSO782G1111 Papaver somniferum HOM05D004231 ORTHO05D004814 3.6e-11 71.6 50 62.0
CDE05G1267 Ceratophyllum demersum HOM05D004231 ORTHO05D004814 4.7e-11 71.2 49 67.3
CDE05G2018 Ceratophyllum demersum HOM05D004231 ORTHO05D004814 4.7e-11 71.2 49 67.3
Actinidia17992 Actinidia chinensis HOM05D004231 ORTHO05D004814 8.1e-11 70.5 50 66.0
Peaxi162Scf00329g00312 Petunia axillaris HOM05D004231 ORTHO05D004814 1.1e-10 70.1 82 46.3
Peaxi162Scf00362g00110 Petunia axillaris HOM05D004231 ORTHO05D004814 1.1e-10 70.1 50 68.0
CSS0007201 Camellia sinensis var. sinensis HOM05D004231 ORTHO05D004814 1.4e-10 69.7 50 66.0
A06p34120 Brassica napus HOM05D004231 ORTHO05D004814 2.4e-10 68.9 51 66.7
ECA233G1094 Erigeron canadensis HOM05D004231 ORTHO05D004814 2.4e-10 68.9 50 64.0
ECA236G1252 Erigeron canadensis HOM05D000103 ORTHO05D000049 2.4e-10 68.9 50 64.0
Lsat_1_v5_gn_8_121420 Lactuca sativa HOM05D004231 ORTHO05D004814 2.4e-10 68.9 49 69.4
BcaC04g22982 Brassica carinata HOM05D004231 ORTHO05D004814 3.1e-10 68.6 51 64.7
A09p11260 Brassica napus HOM05D004231 ORTHO05D004814 3.1e-10 68.6 51 64.7
C09p13290 Brassica napus HOM05D004231 ORTHO05D004814 3.1e-10 68.6 51 64.7
BraA06t26345Z Brassica rapa HOM05D004231 ORTHO05D004814 3.1e-10 68.6 51 64.7
BraA09t36767Z Brassica rapa HOM05D004231 ORTHO05D004814 3.1e-10 68.6 51 64.7
Nitab4.5_0000783g0100 Nicotiana tabacum HOM05D004231 ORTHO05D004814 3.1e-10 68.6 50 64.0
Potri.004G207000 Populus trichocarpa HOM05D004231 ORTHO05D004814 3.1e-10 68.6 52 63.5
Potri.009G168400 Populus trichocarpa HOM05D004231 ORTHO05D004814 3.1e-10 68.6 52 63.5
Sabra04G0139300 Salix brachista HOM05D004231 ORTHO05D004814 3.1e-10 68.6 52 63.5
GSVIVG01023624001 Vitis vinifera HOM05D004231 ORTHO05D004814 3.1e-10 68.6 49 67.3
A07p03760 Brassica napus HOM05D004231 ORTHO05D004814 5.2e-10 67.8 52 61.5
BraA07t28164Z Brassica rapa HOM05D004231 ORTHO05D004814 5.2e-10 67.8 52 61.5
Dinv14175 Davidia involucrata HOM05D004231 ORTHO05D004814 5.2e-10 67.8 50 64.0
Manes.01G017200 Manihot esculenta HOM05D004231 ORTHO05D004814 5.2e-10 67.8 49 65.3
MSTRG.25000 Avicennia marina HOM05D004231 ORTHO05D004814 6.8e-10 67.4 50 60.0
C03p58080 Brassica napus HOM05D004231 ORTHO05D004814 6.8e-10 67.4 51 62.7
BolC3t18081H Brassica oleracea HOM05D004231 ORTHO05D004814 6.8e-10 67.4 51 62.7
BolC9t54222H Brassica oleracea HOM05D004231 ORTHO05D004814 6.8e-10 67.4 51 62.7
Migut.N00847 Erythranthe guttata HOM05D004231 ORTHO05D004814 6.8e-10 67.4 50 58.0
Aqoxy1G01703 Aquilegia oxysepala HOM05D004231 ORTHO05D004814 8.9e-10 67.0 50 64.0
BcaB03g16474 Brassica carinata HOM05D004231 ORTHO05D004814 8.9e-10 67.0 51 62.7
Lsat_1_v5_gn_4_71321 Lactuca sativa HOM05D004231 ORTHO05D004814 8.9e-10 67.0 50 60.0
Mapoly0173s0009 Marchantia polymorpha HOM05D004231 ORTHO05D004814 8.9e-10 67.0 51 68.6
Pp3c5_14900 Physcomitrium patens HOM05D004231 ORTHO05D004814 8.9e-10 67.0 51 68.6
SalBow7G0905 Salvia bowleyana HOM05D004231 ORTHO05D004814 8.9e-10 67.0 52 57.7
Aa31LG2G14870 Aethionema arabicum HOM05D004231 ORTHO05D004814 1.2e-09 66.6 191 28.8
Lj9P408T30 Lonicera japonica HOM05D004231 ORTHO05D004814 1.2e-09 66.6 51 60.8
BcaB03g16477 Brassica carinata HOM05D004231 ORTHO05D004814 1.5e-09 66.2 52 59.6
BcaB03g16478 Brassica carinata HOM05D004231 ORTHO05D004814 1.5e-09 66.2 52 59.6
BcaC01g02941 Brassica carinata HOM05D004231 ORTHO05D004814 1.5e-09 66.2 51 62.7
BcaC06g36249 Brassica carinata HOM05D004231 ORTHO05D004814 1.5e-09 66.2 52 59.6
C07p06030 Brassica napus HOM05D004231 ORTHO05D004814 1.5e-09 66.2 52 59.6
BolC7t41016H Brassica oleracea HOM05D004231 ORTHO05D004814 1.5e-09 66.2 52 59.6
MBI18_g17319_MAGBIO Magnolia biondii HOM05D004231 ORTHO05D004814 1.5e-09 66.2 46 67.4
Nitab4.5_0000129g0030 Nicotiana tabacum HOM05D004231 ORTHO05D004814 1.5e-09 66.2 50 62.0
Nitab4.5_0008730g0040 Nicotiana tabacum HOM05D004231 ORTHO05D004814 1.5e-09 66.2 50 62.0
SMO351G0181 Selaginella moellendorffii HOM05D004231 ORTHO05D004814 1.5e-09 66.2 51 64.7
Sopen01g054320 Solanum pennellii HOM05D004231 ORTHO05D004814 1.5e-09 66.2 49 63.3
PGSC0003DMG400014663 Solanum tuberosum HOM05D000109 ORTHO05D004814 1.5e-09 66.2 49 63.3
SGA_v2.0_scaffold36G14389 Striga asiatica HOM05D004231 ORTHO05D004814 1.5e-09 66.2 52 57.7
EL10Ac9g21537 Beta vulgaris HOM05D004231 ORTHO05D004814 2.0e-09 65.9 49 63.3
BcaB07g31737 Brassica carinata HOM05D004231 ORTHO05D004814 2.0e-09 65.9 51 62.7
Carub.0003s3121 Capsella rubella HOM05D004231 ORTHO05D004814 2.0e-09 65.9 49 63.3
CAN.G5871.1 Capsicum annuum HOM05D004231 ORTHO05D004814 2.0e-09 65.9 48 66.7
CARHR293610 Cardamine hirsuta HOM05D004231 ORTHO05D004814 2.0e-09 65.9 49 63.3
Cpa.g.sc60.14 Carica papaya HOM05D004231 ORTHO05D004814 2.0e-09 65.9 52 59.6
Ciclev10028700m.g Citrus clementina HOM05D004231 ORTHO05D004814 2.0e-09 65.9 52 59.6
Hma1.2p1_0652F.1_g195880 Hydrangea macrophylla HOM05D004231 ORTHO05D004814 2.0e-09 65.9 49 63.3
Nn7g36283 Nelumbo nucifera HOM05D004231 ORTHO05D004814 2.0e-09 65.9 92 39.1
Prupe.8G180500 Prunus persica HOM05D004231 ORTHO05D004814 2.0e-09 65.9 191 28.3
Solyc04g008760.3 Solanum lycopersicum HOM05D004231 ORTHO05D004814 2.0e-09 65.9 49 63.3
Sopen04g003940 Solanum pennellii HOM05D004231 ORTHO05D004814 2.0e-09 65.9 49 63.3
PGSC0003DMG400025309 Solanum tuberosum HOM05D004231 ORTHO05D004814 2.0e-09 65.9 49 63.3
Cc11_g00240 Coffea canephora HOM05D004231 ORTHO05D004814 2.6e-09 65.5 49 63.3
Atru.chr5.3561 Acer truncatum HOM05D004231 ORTHO05D004814 3.4e-09 65.1 53 62.3
AL3G50130 Arabidopsis lyrata HOM05D004231 ORTHO05D004814 3.4e-09 65.1 48 64.6
AT2G17265 Arabidopsis thaliana HOM05D004231 ORTHO05D004814 3.4e-09 65.1 48 64.6
Thhalv10022738m.g Eutrema salsugineum HOM05D004231 ORTHO05D004814 3.4e-09 65.1 51 60.8
Oeu005953.1 Olea europaea HOM05D004231 ORTHO05D004814 3.4e-09 65.1 50 58.0
Sp3g30610 Schrenkiella parvula HOM05D004231 ORTHO05D004814 3.4e-09 65.1 51 60.8
SGA_v2.0_scaffold172G39001 Striga asiatica HOM05D004231 ORTHO05D004814 3.4e-09 65.1 50 58.0
Ah.01g009950 Amaranthus hybridus HOM05D004231 ORTHO05D004814 4.4e-09 64.7 191 28.8
RhsimUnG0022900 Rhododendron simsii HOM05D004231 ORTHO05D004814 4.4e-09 64.7 50 62.0
unitig_0.g2083 Utricularia gibba HOM05D004231 ORTHO05D004814 4.4e-09 64.7 50 60.0
CARHR243620 Cardamine hirsuta HOM05D004231 ORTHO05D004814 5.8e-09 64.3 49 63.3
DCAR_006270 Daucus carota HOM05D004231 ORTHO05D004814 5.8e-09 64.3 50 62.0
THA.LOC104807405 Tarenaya hassleriana HOM05D004231 ORTHO05D004814 5.8e-09 64.3 49 63.3
Carub.0007s0500 Capsella rubella HOM05D004231 ORTHO05D004814 7.6e-09 63.9 49 63.3
MD10G1142000 Malus domestica HOM05D004231 ORTHO05D004814 7.6e-09 63.9 49 61.2
Sc08g0002160 Simmondsia chinensis HOM05D004231 ORTHO05D004814 7.6e-09 63.9 53 58.5
CSS0030147 Camellia sinensis var. sinensis HOM05D004231 ORTHO05D004814 9.9e-09 63.5 47 63.8
CANSAT25G0301 Cannabis sativa HOM05D004231 ORTHO05D004814 9.9e-09 63.5 49 59.2
FAN15G0610 Fragaria x ananassa HOM05D004231 ORTHO05D004814 9.9e-09 63.5 52 59.6
FAN24G0296 Fragaria x ananassa HOM05D004231 ORTHO05D004814 9.9e-09 63.5 52 59.6
FAN27G2171 Fragaria x ananassa HOM05D004231 ORTHO05D004814 9.9e-09 63.5 52 59.6
Phvul.008G292300 Phaseolus vulgaris HOM05D004231 ORTHO05D004814 9.9e-09 63.5 49 65.3
Psat2g000680 Pisum sativum HOM05D004231 ORTHO05D004814 9.9e-09 63.5 49 59.2
Lalb_Chr12g0208621 Lupinus albus HOM05D004231 ORTHO05D004814 1.3e-08 63.2 49 63.3
SHI25239 Sapria himalayana HOM05D004231 ORTHO05D004814 1.3e-08 63.2 47 59.6
RcHm_v2.0_Chr6g0280961 Rosa chinensis HOM05D004231 ORTHO05D004814 1.7e-08 62.8 51 60.8
Thecc.02G146400 Theobroma cacao HOM05D004231 ORTHO05D004814 1.7e-08 62.8 48 62.5
MELO3C015708.2 Cucumis melo HOM05D004231 ORTHO05D004814 2.2e-08 62.4 49 59.2
MBI10_g41732_MAGBIO Magnolia biondii HOM05D004231 ORTHO05D004814 2.2e-08 62.4 47 59.6
AUR62013177 Chenopodium quinoa HOM05D004231 ORTHO05D004814 2.9e-08 62.0 46 60.9
FvH4_2g16830 Fragaria vesca HOM05D004231 ORTHO05D004814 2.9e-08 62.0 52 57.7
Psat2g000800 Pisum sativum HOM05D004231 ORTHO05D004814 2.9e-08 62.0 51 56.9
Lalb_Chr07g0189301 Lupinus albus HOM05D004231 ORTHO05D004814 3.8e-08 61.6 49 59.2
Nn2g15251 Nelumbo nucifera HOM05D004231 ORTHO05D004814 3.8e-08 61.6 50 54.0
QL05p043527 Quercus lobata HOM05D004231 ORTHO05D004814 3.8e-08 61.6 49 59.2
HPP92_007738 Vanilla planifolia HOM05D004231 ORTHO05D004814 3.8e-08 61.6 48 64.6
arahy.Tifrunner.gnm1.ann1.3XUX0K Arachis hypogaea HOM05D004231 ORTHO05D004814 4.9e-08 61.2 49 59.2
arahy.Tifrunner.gnm1.ann1.9M6UE0 Arachis hypogaea HOM05D004231 ORTHO05D004814 4.9e-08 61.2 49 59.2
AUR62010176 Chenopodium quinoa HOM05D004231 ORTHO05D004814 4.9e-08 61.2 45 62.2
Ca_10777_v3 Cicer arietinum L. HOM05D004231 ORTHO05D004814 4.9e-08 61.2 49 57.1
LjContig00081g0001175 Lotus japonicus HOM05D004231 ORTHO05D004814 4.9e-08 61.2 49 59.2
Sed0021373 Sechium edule HOM05D004231 ORTHO05D004814 4.9e-08 61.2 49 59.2
ClCG02G003360 Citrullus lanatus HOM05D004231 ORTHO05D004814 6.4e-08 60.8 49 57.1
CsaV3_7G001970 Cucumis sativus L. HOM05D004231 ORTHO05D004814 6.4e-08 60.8 49 57.1
Gohir.A03G170800 Gossypium hirsutum HOM05D004231 ORTHO05D004814 6.4e-08 60.8 48 62.5
Gohir.D02G193900 Gossypium hirsutum HOM05D004231 ORTHO05D004814 6.4e-08 60.8 48 62.5
Gorai.005G216700 Gossypium raimondii HOM05D004231 ORTHO05D004814 6.4e-08 60.8 48 62.5
Duzib052G0175 Durio zibethinus HOM05D004231 ORTHO05D004814 8.4e-08 60.5 48 62.5
CiPaw.06G115200 Carya illinoinensis HOM05D004231 ORTHO05D004814 1.1e-07 60.1 49 57.1
Glyma.14G001000 Glycine max HOM05D004231 ORTHO05D004814 1.1e-07 60.1 49 59.2
Medtr5g099180 Medicago truncatula HOM05D004231 ORTHO05D004814 1.1e-07 60.1 49 57.1
Sed0027682 Sechium edule HOM05D004231 ORTHO05D004814 1.1e-07 60.1 49 55.1
Cfa005374 Carpinus fangiana HOM05D004231 ORTHO05D004814 1.9e-07 59.3 49 55.1
PGR042G2635 Punica granatum HOM05D004231 ORTHO05D004814 1.9e-07 59.3 46 58.7
TPR.G18636 Trifolium pratense HOM05D004231 ORTHO05D004814 1.9e-07 59.3 49 55.1
TAR625G1260 Trochodendron aralioides HOM05D004231 ORTHO05D004814 2.4e-07 58.9 50 58.0
TWI75G1214 Tripterygium wilfordii HOM05D004231 ORTHO05D004814 3.2e-07 58.5 46 58.7
CiPaw.05G093400 Carya illinoinensis HOM05D004231 ORTHO05D004814 4.2e-07 58.2 46 60.9
CBR_g2798 Chara braunii HOM05D004385 ORTHO05D005245 5.4e-07 57.8 51 54.9
TPR.G5084 Trifolium pratense HOM05D004231 ORTHO05D004814 5.4e-07 57.8 49 55.1
Cre02.g082200 Chlamydomonas reinhardtii HOM05D004231 ORTHO05D004814 7.1e-07 57.4 52 53.8
Os02g0831800 Oryza sativa ssp. japonica HOM05D004231 ORTHO05D004814 7.1e-07 57.4 46 60.9
Cre02.g082250 Chlamydomonas reinhardtii HOM05D004231 ORTHO05D004814 1.6e-06 56.2 52 53.8


User provided reference genes

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