Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_37594 Sequoiadendron giganteum HOM05D005172 ORTHO05D006324 3.1e-220 768.1 363 100.0
SEGI_40738 Sequoiadendron giganteum HOM05D005172 ORTHO05D006324 1.1e-174 616.7 296 97.0
TAR633G1620 Trochodendron aralioides HOM05D005172 ORTHO05D006324 1.9e-92 343.6 279 58.1
MBI18_g32028_MAGBIO Magnolia biondii HOM05D005172 ORTHO05D006324 2.4e-92 343.2 272 59.2
Manes.05G014300 Manihot esculenta HOM05D005172 ORTHO05D006324 2.7e-91 339.7 262 59.9
TAR362G0256 Trochodendron aralioides HOM05D005172 ORTHO05D006324 3.5e-91 339.3 261 60.5
Nn4g25569 Nelumbo nucifera HOM05D005172 ORTHO05D006324 6.0e-91 338.6 272 58.5
Duzib133G1494 Durio zibethinus HOM05D005172 ORTHO05D006324 1.0e-90 337.8 259 59.8
Lju926A5G28 Lonicera japonica HOM05D005172 ORTHO05D006324 2.3e-90 336.7 266 59.0
Atru.chr5.994 Acer truncatum HOM05D005172 ORTHO05D006324 3.0e-90 336.3 261 59.8
QL12p019456 Quercus lobata HOM05D005172 ORTHO05D006324 3.9e-90 335.9 255 60.0
Duzib211G0527 Durio zibethinus HOM05D005172 ORTHO05D006324 5.1e-90 335.5 259 60.2
Thecc.01G315700 Theobroma cacao HOM05D005172 ORTHO05D006324 6.7e-90 335.1 259 59.8
Gohir.D07G133500 Gossypium hirsutum HOM05D005172 ORTHO05D006324 1.5e-89 334.0 278 56.5
Nitab4.5_0001338g0130 Nicotiana tabacum HOM05D005172 ORTHO05D006324 1.5e-89 334.0 281 55.2
CiPaw.07G118900 Carya illinoinensis HOM05D005172 ORTHO05D006324 1.9e-89 333.6 253 60.5
Gorai.001G144800 Gossypium raimondii HOM05D005172 ORTHO05D006324 1.9e-89 333.6 278 56.5
ATR0693G418 Amborella trichopoda HOM05D005172 ORTHO05D006324 2.5e-89 333.2 270 58.1
Cfa005774 Carpinus fangiana HOM05D005172 ORTHO05D006324 2.5e-89 333.2 261 59.4
SGA_v2.0_scaffold334G49079 Striga asiatica HOM05D005172 ORTHO05D006324 2.5e-89 333.2 265 57.0
Haze_05066 Corylus avellana HOM05D005172 ORTHO05D006324 3.3e-89 332.8 261 59.8
Potri.014G118600 Populus trichocarpa HOM05D005172 ORTHO05D006324 3.3e-89 332.8 261 59.8
Gohir.A07G129100 Gossypium hirsutum HOM05D005172 ORTHO05D006324 4.3e-89 332.4 259 59.1
MSTRG.21697 Avicennia marina HOM05D005172 ORTHO05D006324 5.6e-89 332.0 259 58.3
Dinv24461 Davidia involucrata HOM05D005172 ORTHO05D006324 7.4e-89 331.6 261 59.8
Nitab4.5_0011508g0010 Nicotiana tabacum HOM05D005172 ORTHO05D006324 7.4e-89 331.6 266 57.9
GSVIVG01031247001 Vitis vinifera HOM05D005172 ORTHO05D006324 9.6e-89 331.3 257 60.7
BcaB02g07340 Brassica carinata HOM05D005172 ORTHO05D006324 2.1e-88 330.1 264 59.1
THA.LOC104827661 Tarenaya hassleriana HOM05D005172 ORTHO05D006324 2.8e-88 329.7 258 58.9
TWI36G0897 Tripterygium wilfordii HOM05D005172 ORTHO05D006324 2.8e-88 329.7 261 59.0
CSS0017820 Camellia sinensis var. sinensis HOM05D005172 ORTHO05D006324 3.7e-88 329.3 268 58.2
PGSC0003DMG400002764 Solanum tuberosum HOM05D005172 ORTHO05D006324 3.7e-88 329.3 266 57.5
CDE08G0763 Ceratophyllum demersum HOM05D005172 ORTHO05D006324 4.8e-88 328.9 268 58.6
A07p25960 Brassica napus HOM05D005172 ORTHO05D006324 6.2e-88 328.6 264 58.3
BraA07t30243Z Brassica rapa HOM05D005172 ORTHO05D006324 6.2e-88 328.6 264 58.3
Lalb_Chr21g0309651 Lupinus albus HOM05D005172 ORTHO05D006324 6.2e-88 328.6 271 54.6
MD07G1000100 Malus domestica HOM05D005172 ORTHO05D006324 6.2e-88 328.6 257 59.1
Dinv30897 Davidia involucrata HOM05D005172 ORTHO05D006324 8.1e-88 328.2 267 57.7
AL5G45130 Arabidopsis lyrata HOM05D005172 ORTHO05D006324 1.1e-87 327.8 281 55.2
BolC6t37994H Brassica oleracea HOM05D005172 ORTHO05D006324 1.1e-87 327.8 264 58.3
CsaV3_7G030060 Cucumis sativus L. HOM05D005172 ORTHO05D006324 1.4e-87 327.4 253 61.7
Aqoxy2G02725 Aquilegia oxysepala HOM05D005172 ORTHO05D006324 1.8e-87 327.0 271 57.9
Carub.0005s2909 Capsella rubella HOM05D005172 ORTHO05D006324 1.8e-87 327.0 261 57.9
AT3G62370 Arabidopsis thaliana HOM05D005172 ORTHO05D006324 2.4e-87 326.6 281 54.8
BcaC08g45198 Brassica carinata HOM05D005172 ORTHO05D006324 2.4e-87 326.6 264 58.3
C06p28240 Brassica napus HOM05D005172 ORTHO05D006324 2.4e-87 326.6 264 58.3
CANSAT25G1511 Cannabis sativa HOM05D005172 ORTHO05D006324 2.4e-87 326.6 262 58.8
CAN.G1076.20 Capsicum annuum HOM05D005172 ORTHO05D006324 3.1e-87 326.2 265 56.6
Phvul.007G213050 Phaseolus vulgaris HOM05D005172 ORTHO05D006324 4.0e-87 325.9 272 54.4
Sp5g01030 Schrenkiella parvula HOM05D005172 ORTHO05D006324 5.3e-87 325.5 261 58.6
CARHR172700 Cardamine hirsuta HOM05D005172 ORTHO05D006324 6.9e-87 325.1 281 54.4
Glyma.10G011700 Glycine max HOM05D005172 ORTHO05D006324 6.9e-87 325.1 259 57.5
VMungo0720G2990 Vigna mungo HOM05D005172 ORTHO05D006324 6.9e-87 325.1 259 57.1
Peaxi162Scf01061g00133 Petunia axillaris HOM05D005172 ORTHO05D006324 1.5e-86 323.9 266 56.0
Solyc01g100590.3 Solanum lycopersicum HOM05D005172 ORTHO05D006324 1.5e-86 323.9 266 56.8
Thhalv10006054m.g Eutrema salsugineum HOM05D005172 ORTHO05D006324 2.6e-86 323.2 277 54.2
Glyma.02G011100 Glycine max HOM05D005172 ORTHO05D006324 2.6e-86 323.2 259 56.8
Hma1.2p1_0008F-1.1_g005570 Hydrangea macrophylla HOM05D005172 ORTHO05D006324 3.4e-86 322.8 267 57.3
Sopen01g044090 Solanum pennellii HOM05D005172 ORTHO05D006324 4.5e-86 322.4 266 56.8
Aa31LG10G16300 Aethionema arabicum HOM05D005172 ORTHO05D006324 5.8e-86 322.0 281 53.0
PSO761G0644 Papaver somniferum HOM05D005172 ORTHO05D006324 5.8e-86 322.0 261 58.6
PGR044G0670 Punica granatum HOM05D005172 ORTHO05D006324 5.8e-86 322.0 256 58.6
Sabra14G0088100 Salix brachista HOM05D005172 ORTHO05D006324 5.8e-86 322.0 261 57.9
Lj5g0001265 Lotus japonicus HOM05D005172 ORTHO05D006324 7.6e-86 321.6 259 56.0
Sed0009537 Sechium edule HOM05D005172 ORTHO05D006324 9.9e-86 321.2 253 60.9
Prupe.8G000200 Prunus persica HOM05D005172 ORTHO05D006324 1.3e-85 320.9 257 58.4
arahy.Tifrunner.gnm1.ann1.2XA8QH Arachis hypogaea HOM05D005172 ORTHO05D006324 1.7e-85 320.5 267 56.2
arahy.Tifrunner.gnm1.ann1.SY690W Arachis hypogaea HOM05D005172 ORTHO05D006324 2.9e-85 319.7 261 57.1
Manes.01G229300 Manihot esculenta HOM05D005172 ORTHO05D006324 6.4e-85 318.5 262 57.3
Manes.05G005607 Manihot esculenta HOM05D005172 ORTHO05D006324 6.4e-85 318.5 240 61.7
Manes.05G011070 Manihot esculenta HOM05D005172 ORTHO05D006324 6.4e-85 318.5 240 61.7
Manes.08G002402 Manihot esculenta HOM05D005172 ORTHO05D006324 6.4e-85 318.5 240 61.7
FAN24G1196 Fragaria x ananassa HOM05D005172 ORTHO05D006324 1.1e-84 317.8 259 57.9
FAN24G2042 Fragaria x ananassa HOM05D005172 ORTHO05D006324 1.1e-84 317.8 259 57.9
SalBow3G3203 Salvia bowleyana HOM05D005172 ORTHO05D006324 1.1e-84 317.8 259 56.4
Eucgr.K03551 Eucalyptus grandis HOM05D005172 ORTHO05D006324 1.4e-84 317.4 259 57.5
Hund09645 Selenicereus undatus HOM05D005172 ORTHO05D006324 1.4e-84 317.4 266 56.4
Cc02_g35150 Coffea canephora HOM05D005172 ORTHO05D006324 1.9e-84 317.0 281 54.1
Solyc01g079310.3 Solanum lycopersicum HOM05D005172 ORTHO05D006324 1.9e-84 317.0 271 55.4
AUR62022232 Chenopodium quinoa HOM05D005172 ORTHO05D006324 2.4e-84 316.6 264 56.8
Manes.05G014725 Manihot esculenta HOM05D005172 ORTHO05D006324 2.4e-84 316.6 239 61.5
EL10As5g23554 Beta vulgaris HOM05D005172 ORTHO05D006324 3.2e-84 316.2 267 56.6
DCAR_018281 Daucus carota HOM05D005172 ORTHO05D006324 4.2e-84 315.8 260 57.7
Sopen01g031090 Solanum pennellii HOM05D005172 ORTHO05D006324 5.5e-84 315.5 271 55.0
FvH4_2g00030 Fragaria vesca HOM05D005172 ORTHO05D006324 7.1e-84 315.1 260 58.1
RcHm_v2.0_Chr6g0249301 Rosa chinensis HOM05D005172 ORTHO05D006324 9.3e-84 314.7 259 57.1
Eucgr.H01000 Eucalyptus grandis HOM05D005172 ORTHO05D006324 1.6e-83 313.9 260 58.1
FAN19G1206 Fragaria x ananassa HOM05D005172 ORTHO05D006324 1.6e-83 313.9 259 57.5
Ah.01g003950 Amaranthus hybridus HOM05D005172 ORTHO05D006324 2.1e-83 313.5 275 54.2
PGSC0003DMG400009049 Solanum tuberosum HOM05D005172 ORTHO05D006324 2.1e-83 313.5 271 54.6
Ah.02g112400 Amaranthus hybridus HOM05D005172 ORTHO05D006324 3.5e-83 312.8 256 59.4
DCAR_001909 Daucus carota HOM05D005172 ORTHO05D006324 3.5e-83 312.8 265 55.1
Ca_10273_v3 Cicer arietinum L. HOM05D005172 ORTHO05D006324 6.0e-83 312.0 259 54.8
AUR62031944 Chenopodium quinoa HOM05D005172 ORTHO05D006324 7.9e-83 311.6 281 54.1
Medtr1g086810 Medicago truncatula HOM05D005172 ORTHO05D006324 7.9e-83 311.6 259 55.2
HPP92_002597 Vanilla planifolia HOM05D005172 ORTHO05D006324 1.0e-82 311.2 248 58.1
Psat6g162640 Pisum sativum HOM05D005172 ORTHO05D006324 6.7e-82 308.5 259 54.1
Sc17g0000390 Simmondsia chinensis HOM05D005172 ORTHO05D006324 6.7e-82 308.5 268 55.2
CAN.G293.20 Capsicum annuum HOM05D005172 ORTHO05D006324 3.3e-81 306.2 273 53.8
Oeu018081.1 Olea europaea HOM05D005172 ORTHO05D006324 7.4e-81 305.1 266 55.3
HPP92_012811 Vanilla planifolia HOM05D005172 ORTHO05D006324 9.6e-81 304.7 273 53.8
Migut.B00958 Erythranthe guttata HOM05D005172 ORTHO05D006324 2.8e-80 303.1 281 51.2
Os03g0309000 Oryza sativa ssp. japonica HOM05D005172 ORTHO05D006324 3.1e-79 299.7 248 56.0
Gohir.D12G127500 Gossypium hirsutum HOM05D005172 ORTHO05D006324 4.0e-79 299.3 260 55.8
Gorai.008G138400 Gossypium raimondii HOM05D005172 ORTHO05D006324 4.0e-79 299.3 260 55.8
MSTRG.20376 Avicennia marina HOM05D005172 ORTHO05D006324 5.8e-78 295.4 272 52.9
Zm00001eb014830 Zea mays HOM05D005172 ORTHO05D006324 5.8e-78 295.4 270 53.0
vmacro01567 Vaccinium macrocarpon HOM05D005172 ORTHO05D006324 9.3e-76 288.1 357 42.6
Rhsim11G0096600 Rhododendron simsii HOM05D005172 ORTHO05D006324 7.9e-75 285.0 358 42.2
MELO3C015915.2 Cucumis melo HOM05D005172 ORTHO05D006324 3.0e-74 283.1 296 50.7
Mapoly0070s0043 Marchantia polymorpha HOM05D005172 ORTHO05D006324 1.1e-73 281.2 253 52.6
unitig_0.g2227 Utricularia gibba HOM05D005172 ORTHO05D003916 1.5e-73 280.8 266 50.4
FAN20G2313 Fragaria x ananassa HOM05D005172 ORTHO05D006324 3.3e-73 279.6 216 58.8
SalBow7G2322 Salvia bowleyana HOM05D006337 ORTHO05D008050 1.6e-72 277.3 263 53.6
FAN20G2797 Fragaria x ananassa HOM05D005172 ORTHO05D006324 2.8e-72 276.6 236 54.7
SMO119G0084 Selaginella moellendorffii HOM05D005172 ORTHO05D006324 1.8e-71 273.9 250 54.8
Manes.05G006214 Manihot esculenta HOM05D005172 ORTHO05D006324 9.0e-71 271.6 193 64.2
Manes.05G008035 Manihot esculenta HOM05D005172 ORTHO05D006324 9.0e-71 271.6 193 64.2
Manes.05G012891 Manihot esculenta HOM05D005172 ORTHO05D006324 7.7e-70 268.5 193 63.7
ClCG09G005000 Citrullus lanatus HOM05D005172 ORTHO05D006324 2.2e-69 266.9 253 53.4
Ciclev10020948m.g Citrus clementina HOM05D005172 ORTHO05D006324 1.9e-68 263.8 194 59.8
Oeu000005.1 Olea europaea HOM05D005172 ORTHO05D006324 4.2e-68 262.7 224 54.5
Pp3c9_8970 Physcomitrium patens HOM05D005172 ORTHO05D006324 1.2e-67 261.2 278 47.1
Lalb_Chr06g0166961 Lupinus albus HOM05D005172 ORTHO05D006324 1.4e-66 257.7 215 53.0
Pp3c15_10420 Physcomitrium patens HOM05D005172 ORTHO05D006324 1.1e-65 254.6 284 45.8
Actinidia16862 Actinidia chinensis HOM05D005172 ORTHO05D006324 3.3e-65 253.1 228 54.4
AagrBONN_evm.TU.Sc2ySwM_228.5181 Anthoceros agrestis HOM05D005172 ORTHO05D006324 1.2e-62 244.6 259 47.1
Cpa.g.sc18.70 Carica papaya HOM05D005172 ORTHO05D006324 1.2e-62 244.6 255 48.2
Gohir.A12G123800 Gossypium hirsutum HOM05D005172 ORTHO05D006324 3.0e-58 229.9 193 56.5
Ciclev10024074m.g Citrus clementina HOM05D005172 ORTHO05D006324 9.7e-57 224.9 192 53.6
COL.COLO4_23212 Corchorus olitorius HOM05D005172 ORTHO05D006324 5.3e-55 219.2 167 59.3
Nitab4.5_0003540g0100 Nicotiana tabacum HOM05D005172 ORTHO05D006324 2.8e-48 196.8 143 61.5
Hma1.2p1_3280F.1_g334820 Hydrangea macrophylla HOM05D005172 ORTHO05D006324 7.7e-46 188.7 241 44.0
Nitab4.5_0006240g0010 Nicotiana tabacum HOM05D005172 ORTHO05D006324 1.0e-45 188.3 271 39.9
Peaxi162Scf00691g00617 Petunia axillaris HOM05D005172 ORTHO05D006324 2.2e-45 187.2 248 40.7
TPR.G38637 Trifolium pratense HOM05D005172 ORTHO05D006324 6.1e-27 125.9 102 57.8
CBR_g51501 Chara braunii HOM05D005172 ORTHO05D006324 1.8e-23 114.4 143 42.0
TPR.G38640 Trifolium pratense HOM05D005172 ORTHO05D006324 2.0e-17 94.4 95 44.2
Ciclev10023884m.g Citrus clementina HOM05D005172 ORTHO05D006324 4.1e-15 86.7 97 45.4
CBR_g51503 Chara braunii HOM05D005172 ORTHO05D006324 3.3e-12 77.0 122 33.6
Ciclev10023330m.g Citrus clementina HOM05D005172 ORTHO05D006324 6.8e-10 69.3 62 51.6
Lalb_Chr06g0166951 Lupinus albus HOM05D005172 ORTHO05D006324 6.8e-10 69.3 65 49.2
SMO163G0002 Selaginella moellendorffii HOM05D005172 ORTHO05D006324 4.1e-07 60.1 79 45.6
Oeu008479.1 Olea europaea HOM05D005172 ORTHO05D006324 1.2e-06 58.5 51 52.9


User provided reference genes

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