Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_37571 Sequoiadendron giganteum HOM05D004278 ORTHO05D005544 5.2e-123 444.5 244 100.0
CDE10G0378 Ceratophyllum demersum HOM05D004278 ORTHO05D005544 1.1e-75 287.3 205 83.4
Duzib132G1254 Durio zibethinus HOM05D004278 ORTHO05D005544 1.4e-75 287.0 185 89.7
Gohir.A03G194500 Gossypium hirsutum HOM05D004278 ORTHO05D005544 1.8e-75 286.6 180 91.7
Thecc.02G085200 Theobroma cacao HOM05D004278 ORTHO05D005544 2.4e-75 286.2 185 89.7
ATR0733G183 Amborella trichopoda HOM05D004278 ORTHO05D005544 3.1e-75 285.8 179 92.2
arahy.Tifrunner.gnm1.ann1.673KA0 Arachis hypogaea HOM05D004278 ORTHO05D005544 3.1e-75 285.8 185 89.7
MSTRG.5398 Avicennia marina HOM05D004278 ORTHO05D005544 3.1e-75 285.8 185 88.6
CSS0030568 Camellia sinensis var. sinensis HOM05D004278 ORTHO05D005544 3.1e-75 285.8 185 89.7
THA.LOC104804724 Tarenaya hassleriana HOM05D004278 ORTHO05D005544 3.1e-75 285.8 207 81.6
C05p14970 Brassica napus HOM05D004278 ORTHO05D005544 4.1e-75 285.4 212 80.7
A06p12670 Brassica napus HOM05D004278 ORTHO05D005544 5.3e-75 285.0 180 91.1
Cpa.g.sc62.151 Carica papaya HOM05D004278 ORTHO05D005544 5.3e-75 285.0 180 91.1
Gohir.D02G215700 Gossypium hirsutum HOM05D004278 ORTHO05D005544 5.3e-75 285.0 180 91.1
Gorai.005G243700 Gossypium raimondii HOM05D004278 ORTHO05D005544 5.3e-75 285.0 180 91.1
Rhsim11G0177100 Rhododendron simsii HOM05D004278 ORTHO05D005544 5.3e-75 285.0 185 89.7
Sp1g14840 Schrenkiella parvula HOM05D004278 ORTHO05D005544 5.3e-75 285.0 186 88.7
Ah.01g019390 Amaranthus hybridus HOM05D004278 ORTHO05D005544 6.9e-75 284.6 199 83.4
AL1G28860 Arabidopsis lyrata HOM05D004278 ORTHO05D005544 6.9e-75 284.6 180 91.1
AT1G16700 Arabidopsis thaliana HOM05D004278 ORTHO05D005544 6.9e-75 284.6 180 91.1
Dinv23521 Davidia involucrata HOM05D004278 ORTHO05D005544 6.9e-75 284.6 185 88.6
Gohir.A13G034300 Gossypium hirsutum HOM05D004278 ORTHO05D005544 6.9e-75 284.6 180 90.6
Gorai.013G037100 Gossypium raimondii HOM05D004278 ORTHO05D005544 6.9e-75 284.6 180 90.6
Lalb_Chr09g0330921 Lupinus albus HOM05D004278 ORTHO05D005544 6.9e-75 284.6 202 85.1
PSO541G5084 Papaver somniferum HOM05D004278 ORTHO05D005544 6.9e-75 284.6 180 90.6
PSO675G8903 Papaver somniferum HOM05D004278 ORTHO05D005544 6.9e-75 284.6 180 90.6
Haze_02384 Corylus avellana HOM05D004278 ORTHO05D005544 9.1e-75 284.3 184 90.8
Dinv42064 Davidia involucrata HOM05D004278 ORTHO05D005544 9.1e-75 284.3 185 88.6
Medtr8g010570 Medicago truncatula HOM05D004278 ORTHO05D005544 9.1e-75 284.3 187 88.8
Aa31LG4G1970 Aethionema arabicum HOM05D003886 ORTHO05D004587 1.2e-74 283.9 202 82.2
CAN.G1412.6 Capsicum annuum HOM05D004278 ORTHO05D005544 1.2e-74 283.9 185 88.6
CiPaw.05G064500 Carya illinoinensis HOM05D004278 ORTHO05D005544 1.2e-74 283.9 180 90.6
MBI16_g28725_MAGBIO Magnolia biondii HOM05D004278 ORTHO05D005544 1.2e-74 283.9 183 88.5
Manes.17G101100 Manihot esculenta HOM05D004278 ORTHO05D005544 1.2e-74 283.9 180 90.6
Nn5g29610 Nelumbo nucifera HOM05D004278 ORTHO05D005544 1.2e-74 283.9 196 85.7
TWI75G0915 Tripterygium wilfordii HOM05D004278 ORTHO05D005544 1.2e-74 283.9 180 90.6
BraA06t24427Z Brassica rapa HOM05D002153 ORTHO05D002137 1.5e-74 283.5 180 90.6
Carub.0001s1643 Capsella rubella HOM05D004278 ORTHO05D005544 1.5e-74 283.5 180 90.6
Actinidia27895 Actinidia chinensis HOM05D004278 ORTHO05D005544 2.0e-74 283.1 185 88.6
Thhalv10008714m.g Eutrema salsugineum HOM05D004278 ORTHO05D005544 2.0e-74 283.1 180 90.6
Glyma.13G241500 Glycine max HOM05D004278 ORTHO05D005544 2.0e-74 283.1 185 88.6
Peaxi162Scf00016g00727 Petunia axillaris HOM05D004278 ORTHO05D005544 2.0e-74 283.1 185 88.1
THA.LOC104815454 Tarenaya hassleriana HOM05D004278 ORTHO05D005544 2.0e-74 283.1 207 81.2
Gohir.D13G032700 Gossypium hirsutum HOM05D004278 ORTHO05D005544 2.6e-74 282.7 180 90.0
Lalb_Chr16g0387561 Lupinus albus HOM05D004278 ORTHO05D005544 2.6e-74 282.7 202 84.2
TPR.G9766 Trifolium pratense HOM05D004278 ORTHO05D005544 2.6e-74 282.7 187 88.2
vmacro02107 Vaccinium macrocarpon HOM05D004278 ORTHO05D005544 2.6e-74 282.7 185 89.2
HPP92_001858 Vanilla planifolia HOM05D004278 ORTHO05D005544 2.6e-74 282.7 182 89.6
CAN.G1.42 Capsicum annuum HOM05D004278 ORTHO05D005544 3.4e-74 282.3 185 88.1
Cc02_g25830 Coffea canephora HOM05D004278 ORTHO05D005544 3.4e-74 282.3 185 88.1
Lj2g0008973 Lotus japonicus HOM05D004278 ORTHO05D005544 3.4e-74 282.3 180 90.0
Manes.15G163400 Manihot esculenta HOM05D004278 ORTHO05D005544 3.4e-74 282.3 180 90.0
SalBow6G3946 Salvia bowleyana HOM05D004278 ORTHO05D005544 3.4e-74 282.3 180 90.6
SalBow6G5126 Salvia bowleyana HOM05D004278 ORTHO05D005544 3.4e-74 282.3 180 90.6
Hund00270 Selenicereus undatus HOM05D004278 ORTHO05D005544 3.4e-74 282.3 199 82.9
TAR628G0274 Trochodendron aralioides HOM05D004278 ORTHO05D005544 3.4e-74 282.3 180 90.0
VMungo0540G2365 Vigna mungo HOM05D004278 ORTHO05D005544 3.4e-74 282.3 185 89.7
CARHR017160 Cardamine hirsuta HOM05D004278 ORTHO05D005544 4.5e-74 282.0 180 90.0
CARHR072680 Cardamine hirsuta HOM05D004278 ORTHO05D005544 4.5e-74 282.0 180 90.0
DCAR_022973 Daucus carota HOM05D004278 ORTHO05D005544 4.5e-74 282.0 185 88.1
Phvul.006G187900 Phaseolus vulgaris HOM05D004278 ORTHO05D005544 4.5e-74 282.0 185 89.7
SGA_v2.0_scaffold58G20535 Striga asiatica HOM05D004278 ORTHO05D005544 4.5e-74 282.0 185 88.6
Aa31LG7G1160 Aethionema arabicum HOM05D002153 ORTHO05D002137 5.9e-74 281.6 180 90.0
Ah.01g006270 Amaranthus hybridus HOM05D004278 ORTHO05D005544 5.9e-74 281.6 185 88.1
CsaV3_7G023570 Cucumis sativus L. HOM05D004278 ORTHO05D005544 5.9e-74 281.6 181 89.0
Thhalv10019110m.g Eutrema salsugineum HOM05D004278 ORTHO05D005544 5.9e-74 281.6 202 82.2
FvH4_5g29280 Fragaria vesca HOM05D004278 ORTHO05D005544 5.9e-74 281.6 185 89.2
FAN08G1460 Fragaria x ananassa HOM05D004278 ORTHO05D005544 5.9e-74 281.6 185 89.2
MD05G1066300 Malus domestica HOM05D004278 ORTHO05D005544 5.9e-74 281.6 180 89.4
Nitab4.5_0004172g0100 Nicotiana tabacum HOM05D004278 ORTHO05D005544 5.9e-74 281.6 185 88.1
Nitab4.5_0005152g0090 Nicotiana tabacum HOM05D004278 ORTHO05D005544 5.9e-74 281.6 185 88.1
Oeu055570.1 Olea europaea HOM05D004278 ORTHO05D005544 5.9e-74 281.6 185 87.6
RcHm_v2.0_Chr7g0222141 Rosa chinensis HOM05D004278 ORTHO05D005544 5.9e-74 281.6 185 89.2
unitig_22.g5173 Utricularia gibba HOM05D004278 ORTHO05D005544 5.9e-74 281.6 180 89.4
COL.COLO4_25931 Corchorus olitorius HOM05D004278 ORTHO05D005544 7.7e-74 281.2 185 87.6
MELO3C012522.2 Cucumis melo HOM05D004278 ORTHO05D005544 7.7e-74 281.2 180 89.4
Glyma.15G071900 Glycine max HOM05D004278 ORTHO05D005544 7.7e-74 281.2 185 88.1
Hma1.2p1_0066F.1_g036410 Hydrangea macrophylla HOM05D004278 ORTHO05D005544 7.7e-74 281.2 185 88.1
Psat4g207360 Pisum sativum HOM05D004278 ORTHO05D005544 7.7e-74 281.2 187 87.7
Prupe.8G096900 Prunus persica HOM05D004278 ORTHO05D005544 7.7e-74 281.2 180 89.4
TWI31G1137 Tripterygium wilfordii HOM05D004278 ORTHO05D005544 7.7e-74 281.2 180 89.4
AL2G39470 Arabidopsis lyrata HOM05D004278 ORTHO05D005544 1.0e-73 280.8 180 89.4
AT1G79010 Arabidopsis thaliana HOM05D004278 ORTHO05D005544 1.0e-73 280.8 180 89.4
Carub.0002s2588 Capsella rubella HOM05D004278 ORTHO05D005544 1.0e-73 280.8 180 89.4
HanXRQChr05g0152721 Helianthus annuus HOM05D004278 ORTHO05D005544 1.0e-73 280.8 185 88.1
Lsat_1_v5_gn_9_108541 Lactuca sativa HOM05D004278 ORTHO05D005544 1.0e-73 280.8 185 88.1
Sed0011539 Sechium edule HOM05D004278 ORTHO05D005544 1.0e-73 280.8 187 87.7
Solyc01g109620.3 Solanum lycopersicum HOM05D004278 ORTHO05D005544 1.0e-73 280.8 185 88.1
Solyc10g051350.2 Solanum lycopersicum HOM05D004278 ORTHO05D005544 1.0e-73 280.8 185 88.1
Sopen01g051810 Solanum pennellii HOM05D004278 ORTHO05D005544 1.0e-73 280.8 185 88.1
Sopen10g023040 Solanum pennellii HOM05D004278 ORTHO05D005544 1.0e-73 280.8 185 88.1
PGSC0003DMG400000726 Solanum tuberosum HOM05D004278 ORTHO05D005544 1.0e-73 280.8 185 88.1
PGSC0003DMG400033912 Solanum tuberosum HOM05D004278 ORTHO05D005544 1.0e-73 280.8 185 88.1
BcaB02g07191 Brassica carinata HOM05D004278 ORTHO05D005544 1.3e-73 280.4 180 89.4
BcaC08g45392 Brassica carinata HOM05D004278 ORTHO05D005544 1.3e-73 280.4 180 89.4
BcaC08g47465 Brassica carinata HOM05D004278 ORTHO05D005544 1.3e-73 280.4 180 89.4
A07p27370 Brassica napus HOM05D004278 ORTHO05D005544 1.3e-73 280.4 180 89.4
A07p44150 Brassica napus HOM05D004278 ORTHO05D005544 1.3e-73 280.4 180 89.4
C06p30230 Brassica napus HOM05D004278 ORTHO05D005544 1.3e-73 280.4 180 89.4
C06p52880 Brassica napus HOM05D004278 ORTHO05D005544 1.3e-73 280.4 180 89.4
BolC6t38186H Brassica oleracea HOM05D004278 ORTHO05D005544 1.3e-73 280.4 180 89.4
BolC6t40306H Brassica oleracea HOM05D004278 ORTHO05D005544 1.3e-73 280.4 180 89.4
BraA07t30378Z Brassica rapa HOM05D004278 ORTHO05D005544 1.3e-73 280.4 180 89.4
BraA07t31923Z Brassica rapa HOM05D004278 ORTHO05D005544 1.3e-73 280.4 180 89.4
ClCG02G005010 Citrullus lanatus HOM05D004278 ORTHO05D005544 1.3e-73 280.4 183 89.1
ECA240G2473 Erigeron canadensis HOM05D004278 ORTHO05D005544 1.3e-73 280.4 184 88.0
Eucgr.I00724 Eucalyptus grandis HOM05D004278 ORTHO05D005544 1.3e-73 280.4 180 90.0
Lsat_1_v5_gn_7_89240 Lactuca sativa HOM05D004278 ORTHO05D005544 1.3e-73 280.4 184 88.0
Sp5g34060 Schrenkiella parvula HOM05D004278 ORTHO05D005544 1.3e-73 280.4 180 89.4
EL10Ac9g21724 Beta vulgaris HOM05D004278 ORTHO05D005544 1.7e-73 280.0 185 87.6
MD10G1076300 Malus domestica HOM05D004278 ORTHO05D005544 1.7e-73 280.0 180 88.9
Ca_17260_v3 Cicer arietinum L. HOM05D004278 ORTHO05D005544 2.2e-73 279.6 190 86.8
Migut.N01239 Erythranthe guttata HOM05D004278 ORTHO05D005544 2.2e-73 279.6 185 87.6
FAN18G1232 Fragaria x ananassa HOM05D004278 ORTHO05D005544 2.2e-73 279.6 185 89.2
HanXRQChr16g0505671 Helianthus annuus HOM05D004278 ORTHO05D005544 2.9e-73 279.3 185 87.6
Nitab4.5_0000308g0130 Nicotiana tabacum HOM05D004278 ORTHO05D005544 3.8e-73 278.9 176 91.5
Aqoxy2G01125 Aquilegia oxysepala HOM05D004278 ORTHO05D005544 5.0e-73 278.5 180 88.9
CANSAT01G0337 Cannabis sativa HOM05D004278 ORTHO05D005544 5.0e-73 278.5 190 85.3
Nitab4.5_0001361g0250 Nicotiana tabacum HOM05D004278 ORTHO05D005544 5.0e-73 278.5 185 87.6
QL11p043693 Quercus lobata HOM05D004278 ORTHO05D005544 5.0e-73 278.5 178 89.3
Zm00001eb059090 Zea mays HOM05D004278 ORTHO05D005544 5.0e-73 278.5 183 88.5
Os03g0774200 Oryza sativa ssp. japonica HOM05D004278 ORTHO05D005544 1.1e-72 277.3 180 88.9
GSVIVG01031966001 Vitis vinifera HOM05D004278 ORTHO05D005544 1.1e-72 277.3 180 88.9
Potri.009G116000 Populus trichocarpa HOM05D004278 ORTHO05D005544 1.9e-72 276.6 187 86.6
Atru.chr5.3016 Acer truncatum HOM05D004278 ORTHO05D005544 3.2e-72 275.8 180 88.3
PGR042G2304 Punica granatum HOM05D004278 ORTHO05D005544 3.2e-72 275.8 185 85.9
AUR62011323 Chenopodium quinoa HOM05D004278 ORTHO05D005544 4.2e-72 275.4 185 86.5
AUR62016737 Chenopodium quinoa HOM05D004278 ORTHO05D005544 4.2e-72 275.4 185 86.5
Ciclev10029226m.g Citrus clementina HOM05D004278 ORTHO05D005544 4.2e-72 275.4 180 87.8
Lj5A197T63 Lonicera japonica HOM05D004278 ORTHO05D005544 7.2e-72 274.6 168 94.6
Duzib052G0763 Durio zibethinus HOM05D004278 ORTHO05D005544 2.0e-69 266.5 161 97.5
Mapoly0008s0062 Marchantia polymorpha HOM05D004278 ORTHO05D005544 1.7e-68 263.5 166 91.6
BcaC05g25531 Brassica carinata HOM05D002153 ORTHO05D002137 2.2e-68 263.1 186 84.4
Pp3c15_4330 Physcomitrium patens HOM05D004278 ORTHO05D005544 2.2e-68 263.1 167 91.0
Pp3c9_8460 Physcomitrium patens HOM05D004278 ORTHO05D005544 2.2e-68 263.1 167 91.0
CBR_g34677 Chara braunii HOM05D004278 ORTHO05D005544 2.4e-67 259.6 166 90.4
Hund06234 Selenicereus undatus HOM05D004278 ORTHO05D005544 4.5e-66 255.4 241 58.1
SMO228G0074 Selaginella moellendorffii HOM05D004278 ORTHO05D005544 5.9e-66 255.0 201 77.6
Actinidia17816 Actinidia chinensis HOM05D004278 ORTHO05D005544 1.0e-62 244.2 148 98.6
BolC5t30212H Brassica oleracea HOM05D004278 ORTHO05D005544 3.3e-61 239.2 212 68.9
Glyma.05G236100 Glycine max HOM05D004278 ORTHO05D005544 3.3e-61 239.2 148 92.6
MCO04G399 Micromonas commoda HOM05D004278 ORTHO05D005544 6.3e-60 235.0 165 85.5
Gohir.A12G028800 Gossypium hirsutum HOM05D004278 ORTHO05D005544 9.1e-59 231.1 184 74.5
Cre12.g496750 Chlamydomonas reinhardtii HOM05D004278 ORTHO05D005544 4.5e-58 228.8 195 75.4
PRCOL_00001402 Prasinoderma coloniale HOM05D004278 ORTHO05D005544 3.8e-57 225.7 166 79.5
CDE10G0028 Ceratophyllum demersum HOM05D004278 ORTHO05D005544 5.0e-57 225.3 137 97.8
Gorai.008G028900 Gossypium raimondii HOM05D004278 ORTHO05D005544 6.5e-57 224.9 158 75.9
Sc18g0004460 Simmondsia chinensis HOM05D004278 ORTHO05D005544 1.9e-56 223.4 153 86.3
arahy.Tifrunner.gnm1.ann1.Z91YIY Arachis hypogaea HOM05D004278 ORTHO05D005544 3.2e-56 222.6 153 86.9
SGA_v2.0_scaffold32G13166 Striga asiatica HOM05D004278 ORTHO05D005544 8.0e-55 218.0 153 85.0
Haze_27004 Corylus avellana HOM05D004278 ORTHO05D005544 2.0e-53 213.4 166 76.5
AagrBONN_evm.TU.Sc2ySwM_117.1035 Anthoceros agrestis HOM05D004278 ORTHO05D005544 1.3e-52 210.7 137 91.2
CSS0043835 Camellia sinensis var. sinensis HOM05D004278 ORTHO05D005544 2.2e-52 209.9 176 65.9
Potri.004G154900 Populus trichocarpa HOM05D004278 ORTHO05D005544 9.1e-51 204.5 132 95.5
Cfa025738 Carpinus fangiana HOM05D004278 ORTHO05D005544 5.9e-50 201.8 168 75.6
Zm00001eb213750 Zea mays HOM05D004278 ORTHO05D005544 1.9e-48 196.8 113 83.2
Gohir.D12G028300 Gossypium hirsutum HOM05D004278 ORTHO05D005544 6.3e-44 181.8 188 59.6
Lj2g0023328 Lotus japonicus HOM05D004278 ORTHO05D005544 2.3e-38 163.3 92 80.4
TAR376G0025 Trochodendron aralioides HOM05D002092 ORTHO05D005410 7.5e-37 158.3 89 78.7
Ca_17266_v3 Cicer arietinum L. HOM05D004278 ORTHO05D005544 1.7e-36 157.1 99 75.8
TAR625G0183 Trochodendron aralioides HOM05D004278 ORTHO05D416112 9.5e-32 141.4 127 59.1
HPP92_001874 Vanilla planifolia HOM05D004278 ORTHO05D431721 3.6e-31 139.4 118 62.7
Sc08g0000500 Simmondsia chinensis HOM05D004278 ORTHO05D021139 2.9e-28 129.8 92 72.8
Lsat_1_v5_gn_5_118541 Lactuca sativa HOM05D004278 ORTHO05D021139 9.2e-19 98.2 109 50.5
TAR376G0081 Trochodendron aralioides HOM05D004278 ORTHO05D021139 1.6e-18 97.4 47 100.0
Thhalv10017872m.g Eutrema salsugineum HOM05D004278 ORTHO05D005544 2.1e-18 97.1 180 37.2
HanXRQChr15g0486481 Helianthus annuus HOM05D004278 ORTHO05D021139 3.9e-17 92.8 78 65.4
SEGI_04250 Sequoiadendron giganteum HOM05D000684 ORTHO05D000688 1.2e-13 81.3 57 61.4
SEGI_02686 Sequoiadendron giganteum HOM05D000371 ORTHO05D004413 1.3e-09 67.8 36 75.0
Ca_28908_v3 Cicer arietinum L. HOM05D004278 ORTHO05D004593 1.9e-08 63.9 109 45.0
Lsat_1_v5_gn_3_134741 Lactuca sativa HOM05D004278 ORTHO05D021139 1.6e-07 60.8 60 53.3


User provided reference genes

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