Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_37553 Sequoiadendron giganteum HOM05D005356 ORTHO05D006596 9.8e-239 829.7 415 100.0
Aqoxy3G04210 Aquilegia oxysepala HOM05D005356 ORTHO05D006596 1.9e-120 436.8 331 63.7
Atru.chr12.1818 Acer truncatum HOM05D005356 ORTHO05D006596 1.6e-119 433.7 329 64.1
ATR0369G003 Amborella trichopoda HOM05D005356 ORTHO05D006596 1.6e-119 433.7 322 65.2
Prupe.2G329800 Prunus persica HOM05D005356 ORTHO05D006596 1.3e-118 430.6 358 60.1
Ciclev10031697m.g Citrus clementina HOM05D005356 ORTHO05D006596 1.7e-118 430.3 344 60.5
Hma1.2p1_0419F.1_g149580 Hydrangea macrophylla HOM05D005356 ORTHO05D006596 3.0e-118 429.5 330 63.3
TAR629G3426 Trochodendron aralioides HOM05D005356 ORTHO05D006596 3.0e-118 429.5 321 65.7
COL.COLO4_32921 Corchorus olitorius HOM05D005356 ORTHO05D006596 3.9e-118 429.1 324 63.9
Nn1g09227 Nelumbo nucifera HOM05D005356 ORTHO05D006596 3.9e-118 429.1 369 58.8
ECA232G1465 Erigeron canadensis HOM05D005356 ORTHO05D006596 6.6e-118 428.3 354 60.7
Gorai.007G246900 Gossypium raimondii HOM05D005356 ORTHO05D006596 1.1e-117 427.6 324 63.6
TAR375G1012 Trochodendron aralioides HOM05D005356 ORTHO05D006596 1.1e-117 427.6 323 64.4
Hma1.2p1_0564F.1_g179310 Hydrangea macrophylla HOM05D005356 ORTHO05D006596 1.9e-117 426.8 319 65.5
Gohir.D11G234600 Gossypium hirsutum HOM05D005356 ORTHO05D006596 2.5e-117 426.4 324 63.3
Aqoxy1G01762 Aquilegia oxysepala HOM05D005356 ORTHO05D006596 3.3e-117 426.0 314 65.6
Thecc.05G227000 Theobroma cacao HOM05D005356 ORTHO05D006596 4.3e-117 425.6 324 63.9
Peaxi162Scf00263g00323 Petunia axillaris HOM05D005356 ORTHO05D006596 9.5e-117 424.5 328 61.6
Hund11857 Selenicereus undatus HOM05D005356 ORTHO05D006596 9.5e-117 424.5 349 58.5
Gohir.A08G221634 Gossypium hirsutum HOM05D005356 ORTHO05D006596 2.8e-116 422.9 324 63.3
Gorai.004G255200 Gossypium raimondii HOM05D005356 ORTHO05D006596 2.8e-116 422.9 324 63.6
Manes.08G159200 Manihot esculenta HOM05D005356 ORTHO05D006596 2.8e-116 422.9 327 63.3
Phvul.011G016500 Phaseolus vulgaris HOM05D005356 ORTHO05D006596 6.2e-116 421.8 400 55.5
HanXRQChr05g0139001 Helianthus annuus HOM05D005356 ORTHO05D006596 8.1e-116 421.4 315 65.7
Potri.013G076100 Populus trichocarpa HOM05D005356 ORTHO05D006596 8.1e-116 421.4 348 59.8
RcHm_v2.0_Chr1g0384641 Rosa chinensis HOM05D005356 ORTHO05D006596 1.1e-115 421.0 327 62.1
Dinv17238 Davidia involucrata HOM05D005356 ORTHO05D006596 2.3e-115 419.9 315 64.4
Sabra13G0065300 Salix brachista HOM05D005356 ORTHO05D006596 2.3e-115 419.9 324 63.3
Gohir.A11G226000 Gossypium hirsutum HOM05D005356 ORTHO05D006596 5.2e-115 418.7 324 62.7
PGSC0003DMG400024812 Solanum tuberosum HOM05D005356 ORTHO05D006596 5.2e-115 418.7 328 59.8
Cc10_g12920 Coffea canephora HOM05D005356 ORTHO05D006596 8.9e-115 417.9 338 61.2
Medtr0172s0020 Medicago truncatula HOM05D005356 ORTHO05D006596 8.9e-115 417.9 316 64.2
FvH4_7g34281 Fragaria vesca HOM05D005356 ORTHO05D006596 1.2e-114 417.5 327 61.2
Solyc04g064720.3 Solanum lycopersicum HOM05D005356 ORTHO05D006596 1.2e-114 417.5 328 59.8
Sopen04g026680 Solanum pennellii HOM05D005356 ORTHO05D006596 1.2e-114 417.5 328 59.8
arahy.Tifrunner.gnm1.ann1.509DQ1 Arachis hypogaea HOM05D005356 ORTHO05D006596 1.5e-114 417.2 339 60.5
CAN.G2009.1 Capsicum annuum HOM05D005356 ORTHO05D006596 1.5e-114 417.2 328 59.5
Nn3g19190 Nelumbo nucifera HOM05D005356 ORTHO05D006596 2.0e-114 416.8 319 62.7
AUR62002252 Chenopodium quinoa HOM05D005356 ORTHO05D006596 4.4e-114 415.6 315 62.9
Lsat_1_v5_gn_9_47941 Lactuca sativa HOM05D005356 ORTHO05D006596 4.4e-114 415.6 315 65.1
arahy.Tifrunner.gnm1.ann1.RW14FX Arachis hypogaea HOM05D005356 ORTHO05D006596 5.8e-114 415.2 339 60.2
PGR119G0933 Punica granatum HOM05D005356 ORTHO05D006596 7.6e-114 414.8 316 64.9
MD07G1311300 Malus domestica HOM05D005356 ORTHO05D006596 9.9e-114 414.5 317 62.8
Nitab4.5_0000299g0040 Nicotiana tabacum HOM05D005356 ORTHO05D006596 9.9e-114 414.5 328 59.8
Nitab4.5_0002990g0020 Nicotiana tabacum HOM05D005356 ORTHO05D006596 9.9e-114 414.5 328 59.1
PSO782G1515 Papaver somniferum HOM05D005356 ORTHO05D006596 9.9e-114 414.5 330 61.5
CiPaw.05G210900 Carya illinoinensis HOM05D005356 ORTHO05D006596 1.3e-113 414.1 324 60.8
Os04g0602400 Oryza sativa ssp. japonica HOM05D005356 ORTHO05D006596 1.7e-113 413.7 323 62.2
Lj3g0010653 Lotus japonicus HOM05D005356 ORTHO05D006596 2.2e-113 413.3 366 56.8
PGR008G0003 Punica granatum HOM05D005356 ORTHO05D006596 2.2e-113 413.3 316 64.6
PGR131G0008 Punica granatum HOM05D005356 ORTHO05D006596 2.2e-113 413.3 316 64.6
DCAR_009031 Daucus carota HOM05D005356 ORTHO05D006596 4.9e-113 412.1 332 59.0
CiPaw.06G037000 Carya illinoinensis HOM05D005356 ORTHO05D006596 8.4e-113 411.4 317 61.8
EL10Ac3g05893 Beta vulgaris HOM05D005356 ORTHO05D006596 1.1e-112 411.0 315 62.9
Eucgr.A02993 Eucalyptus grandis HOM05D005356 ORTHO05D006596 2.4e-112 409.8 315 63.8
Glyma.12G013400 Glycine max HOM05D005356 ORTHO05D006596 3.2e-112 409.5 327 62.1
AUR62015463 Chenopodium quinoa HOM05D005356 ORTHO05D006596 7.1e-112 408.3 312 62.2
Migut.C01041 Erythranthe guttata HOM05D005356 ORTHO05D006596 1.2e-111 407.5 319 60.8
Lalb_Chr01g0000721 Lupinus albus HOM05D005356 ORTHO05D006596 1.2e-111 407.5 373 56.6
Sed0019262 Sechium edule HOM05D005356 ORTHO05D006596 1.2e-111 407.5 321 60.7
MSTRG.24194 Avicennia marina HOM05D005356 ORTHO05D006596 1.6e-111 407.1 327 59.6
Sed0017544 Sechium edule HOM05D005356 ORTHO05D006596 1.6e-111 407.1 321 61.4
GSVIVG01024263001 Vitis vinifera HOM05D005356 ORTHO05D006596 2.1e-111 406.8 321 61.1
THA.LOC104802905 Tarenaya hassleriana HOM05D005356 ORTHO05D006596 6.0e-111 405.2 384 54.7
Sabra19G0053800 Salix brachista HOM05D005356 ORTHO05D006596 1.3e-110 404.1 345 58.6
CsaV3_2G035860 Cucumis sativus L. HOM05D005356 ORTHO05D006596 1.7e-110 403.7 338 58.0
Psat0s2502g0200 Pisum sativum HOM05D005356 ORTHO05D006596 1.7e-110 403.7 321 60.4
MELO3C024754.2 Cucumis melo HOM05D005356 ORTHO05D006596 3.0e-110 402.9 321 60.4
CANSAT21G1742 Cannabis sativa HOM05D005356 ORTHO05D006596 5.1e-110 402.1 317 62.5
THA.LOC104820830 Tarenaya hassleriana HOM05D005356 ORTHO05D006596 8.6e-110 401.4 323 59.8
Migut.N03237 Erythranthe guttata HOM05D005356 ORTHO05D006596 1.5e-109 400.6 327 58.7
VMungo0647G2360 Vigna mungo HOM05D005356 ORTHO05D006596 7.3e-109 398.3 300 65.0
SalBow6G3313 Salvia bowleyana HOM05D005356 ORTHO05D006596 1.6e-108 397.1 330 58.5
TPR.G9827 Trifolium pratense HOM05D005356 ORTHO05D006596 2.1e-108 396.7 350 57.7
SalBow7G2700 Salvia bowleyana HOM05D005356 ORTHO05D006596 4.7e-108 395.6 319 59.2
Oeu030531.2 Olea europaea HOM05D005356 ORTHO05D006596 1.1e-107 394.4 343 56.9
Sp6g26700 Schrenkiella parvula HOM05D005356 ORTHO05D006596 6.9e-107 391.7 316 59.8
Aa31LG11G12150 Aethionema arabicum HOM05D005356 ORTHO05D006596 1.2e-106 391.0 320 59.7
A02p04240 Brassica napus HOM05D005356 ORTHO05D006596 2.6e-106 389.8 316 60.4
BraA02t05387Z Brassica rapa HOM05D005356 ORTHO05D006596 2.6e-106 389.8 316 60.4
FAN03G1362 Fragaria x ananassa HOM05D005356 ORTHO05D006596 5.8e-106 388.7 299 63.2
BcaC03g13524 Brassica carinata HOM05D005356 ORTHO05D006596 7.6e-106 388.3 316 60.1
CARHR195670 Cardamine hirsuta HOM05D005356 ORTHO05D006596 9.9e-106 387.9 330 57.0
C02p09120 Brassica napus HOM05D005356 ORTHO05D006596 1.3e-105 387.5 316 59.8
BcaB08g36764 Brassica carinata HOM05D005356 ORTHO05D006596 1.7e-105 387.1 316 60.1
BcaC04g18781 Brassica carinata HOM05D005356 ORTHO05D006596 2.2e-105 386.7 316 59.8
BraA10t44246Z Brassica rapa HOM05D005356 ORTHO05D006596 8.4e-105 384.8 332 56.9
PSO063G2098 Papaver somniferum HOM05D005356 ORTHO05D006596 8.4e-105 384.8 284 65.8
A10p21870 Brassica napus HOM05D005356 ORTHO05D006596 1.1e-104 384.4 316 59.2
SGA_v2.0_scaffold19G08642 Striga asiatica HOM05D005356 ORTHO05D006596 1.9e-104 383.6 300 60.3
AT5G17520 Arabidopsis thaliana HOM05D005356 ORTHO05D006596 3.2e-104 382.9 383 52.2
BolC2t06824H Brassica oleracea HOM05D005356 ORTHO05D006596 4.2e-104 382.5 316 59.2
C09p59620 Brassica napus HOM05D005356 ORTHO05D006596 9.3e-104 381.3 329 56.5
BolC9t58801H Brassica oleracea HOM05D005356 ORTHO05D006596 9.3e-104 381.3 329 56.5
AL6G28610 Arabidopsis lyrata HOM05D005356 ORTHO05D006596 2.1e-103 380.2 373 52.5
Mapoly0051s0014 Marchantia polymorpha HOM05D005356 ORTHO05D006596 3.5e-103 379.4 319 58.0
Pp3c6_18710 Physcomitrium patens HOM05D005356 ORTHO05D006596 1.7e-102 377.1 423 48.9
MSTRG.22381 Avicennia marina HOM05D005356 ORTHO05D006596 3.3e-101 372.9 321 55.5
unitig_744.g24563 Utricularia gibba HOM05D005356 ORTHO05D006596 5.6e-101 372.1 336 55.7
Duzib177G1190 Durio zibethinus HOM05D005356 ORTHO05D006596 3.1e-99 366.3 257 69.3
AagrBONN_evm.TU.Sc2ySwM_228.477 Anthoceros agrestis HOM05D005356 ORTHO05D006596 5.3e-99 365.5 354 53.4
Lj3A883T53 Lonicera japonica HOM05D005356 ORTHO05D006596 4.5e-98 362.5 255 68.6
Oeu015013.2 Olea europaea HOM05D005356 ORTHO05D006596 4.5e-98 362.5 400 48.2
A10p21860 Brassica napus HOM05D005356 ORTHO05D006596 7.6e-98 361.7 304 58.2
MD01G1240200 Malus domestica HOM05D005356 ORTHO05D006596 3.8e-97 359.4 316 56.3
Actinidia33804 Actinidia chinensis HOM05D005356 ORTHO05D006596 8.4e-97 358.2 341 56.0
Rhsim09G0214300 Rhododendron simsii HOM05D005356 ORTHO05D006596 1.6e-95 354.0 257 68.9
SMO012G0030 Selaginella moellendorffii HOM05D005356 ORTHO05D006596 3.0e-94 349.7 335 53.1
Cpa.g.sc43.152 Carica papaya HOM05D005356 ORTHO05D006596 3.3e-93 346.3 259 65.3
Ca_19620_v3 Cicer arietinum L. HOM05D005356 ORTHO05D006596 5.6e-93 345.5 292 58.2
Manes.09G130400 Manihot esculenta HOM05D005356 ORTHO05D006596 1.3e-92 344.4 327 52.6
Gohir.D08G239900 Gossypium hirsutum HOM05D005356 ORTHO05D006596 2.8e-92 343.2 268 62.7
Pp3c24_890 Physcomitrium patens HOM05D005356 ORTHO05D006596 6.2e-92 342.0 316 54.4
Haze_00348 Corylus avellana HOM05D005356 ORTHO05D006596 6.9e-91 338.6 279 61.3
ClCG02G007870 Citrullus lanatus HOM05D005356 ORTHO05D006596 5.5e-88 328.9 298 55.7
Carub.0006s1575 Capsella rubella HOM05D005356 ORTHO05D006596 1.3e-81 307.8 263 57.0
SMO118G0252 Selaginella moellendorffii HOM05D005356 ORTHO05D006596 1.7e-81 307.4 273 56.4
MBI04_g30781_MAGBIO Magnolia biondii HOM05D005356 ORTHO05D006596 5.7e-77 292.4 206 69.9
CDE11G1065 Ceratophyllum demersum HOM05D005356 ORTHO05D006596 1.6e-76 290.8 364 46.4
HPP92_022764 Vanilla planifolia HOM05D005356 ORTHO05D006596 1.2e-74 284.6 223 60.1
CANSAT21G0168 Cannabis sativa HOM05D005356 ORTHO05D006596 5.7e-69 265.8 216 59.3
Sopen04g026690 Solanum pennellii HOM05D005356 ORTHO05D006596 1.3e-68 264.6 208 60.6
vmacro22188 Vaccinium macrocarpon HOM05D005356 ORTHO05D006596 2.4e-67 260.4 236 58.9
CSS0033101 Camellia sinensis var. sinensis HOM05D005356 ORTHO05D006596 7.9e-63 245.4 174 70.1
Pp3c23_14070 Physcomitrium patens HOM05D005356 ORTHO05D006596 3.9e-62 243.0 244 50.0
Sc03g0005650 Simmondsia chinensis HOM05D005356 ORTHO05D006596 1.8e-59 234.2 176 66.5
Zm00001eb071770 Zea mays HOM05D005356 ORTHO05D006596 2.5e-56 223.8 180 61.7
CANSAT21G1370 Cannabis sativa HOM05D005356 ORTHO05D006596 1.5e-53 214.5 171 59.6
MCO10G093 Micromonas commoda HOM05D005356 ORTHO05D006596 1.4e-46 191.4 306 36.6
Actinidia04557 Actinidia chinensis HOM05D005356 ORTHO05D006596 1.7e-41 174.5 222 44.1
Cre12.g486600 Chlamydomonas reinhardtii HOM05D005356 ORTHO05D006596 3.0e-38 163.7 314 32.8
Pp3c24_840 Physcomitrium patens HOM05D005356 ORTHO05D006596 9.8e-37 158.7 147 51.7
Thhalv10016106m.g Eutrema salsugineum HOM05D005356 ORTHO05D006596 1.3e-33 148.3 117 57.3
AT5G17523 Arabidopsis thaliana HOM05D005356 ORTHO05D006596 8.6e-33 145.6 191 46.6
PRCOL_00004977 Prasinoderma coloniale HOM05D005356 ORTHO05D006596 2.8e-31 140.6 302 31.1
CSS0037967 Camellia sinensis var. sinensis HOM05D005356 ORTHO05D006596 5.4e-27 126.3 75 74.7
CBR_g17686 Chara braunii HOM05D005356 ORTHO05D006596 4.5e-26 123.2 104 51.0
Glyma.09G223400 Glycine max HOM05D005356 ORTHO05D006596 2.5e-24 117.5 90 58.9
Pp3c21_10850 Physcomitrium patens HOM05D005356 ORTHO05D310352 6.6e-17 92.8 184 32.1
Zm00001eb003380 Zea mays HOM05D001522 ORTHO05D001547 1.2e-15 88.6 78 61.5
CBR_g17688 Chara braunii HOM05D005356 ORTHO05D006596 3.6e-15 87.0 132 34.8
HPP92_022763 Vanilla planifolia HOM05D005356 ORTHO05D006596 5.0e-09 66.6 48 62.5


User provided reference genes

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