Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_37379 Sequoiadendron giganteum HOM05D001245 ORTHO05D004900 1.8e-139 499.2 251 100.0
Mapoly0052s0071 Marchantia polymorpha HOM05D001245 ORTHO05D004900 3.7e-23 112.8 194 39.2
Nn2g15212 Nelumbo nucifera HOM05D001245 ORTHO05D004900 1.4e-22 110.9 158 46.8
Thecc.09G237500 Theobroma cacao HOM05D001245 ORTHO05D004900 1.4e-22 110.9 189 40.2
COL.COLO4_05366 Corchorus olitorius HOM05D001245 ORTHO05D004900 2.4e-22 110.2 188 39.4
TAR633G0303 Trochodendron aralioides HOM05D001245 ORTHO05D004900 3.1e-22 109.8 156 44.2
MSTRG.12463 Avicennia marina HOM05D001245 ORTHO05D004900 5.4e-22 109.0 171 40.9
Gohir.D05G072700 Gossypium hirsutum HOM05D001245 ORTHO05D004900 2.7e-21 106.7 151 45.7
PGR119G2403 Punica granatum HOM05D001245 ORTHO05D004900 2.7e-21 106.7 142 47.2
Gorai.009G073700 Gossypium raimondii HOM05D001245 ORTHO05D004900 4.5e-21 105.9 154 46.1
Gohir.A05G069800 Gossypium hirsutum HOM05D001245 ORTHO05D004900 5.9e-21 105.5 120 52.5
PSO339G0578 Papaver somniferum HOM05D001245 ORTHO05D004900 5.9e-21 105.5 142 47.2
TWI60G0980 Tripterygium wilfordii HOM05D001245 ORTHO05D004900 7.7e-21 105.1 171 45.0
PSO384G2906 Papaver somniferum HOM05D001245 ORTHO05D004900 1.0e-20 104.8 117 53.0
Potri.009G051500 Populus trichocarpa HOM05D001245 ORTHO05D004900 1.7e-20 104.0 186 39.2
Phvul.011G022700 Phaseolus vulgaris HOM05D001245 ORTHO05D004900 5.0e-20 102.4 171 39.2
Lalb_Chr19g0139801 Lupinus albus HOM05D001245 ORTHO05D004900 8.6e-20 101.7 165 41.8
Prupe.4G254100 Prunus persica HOM05D001245 ORTHO05D004900 8.6e-20 101.7 139 46.0
Actinidia16343 Actinidia chinensis HOM05D001245 ORTHO05D004900 1.1e-19 101.3 142 43.7
Psat7g172200 Pisum sativum HOM05D001245 ORTHO05D004900 1.5e-19 100.9 130 49.2
Sc06g0004620 Simmondsia chinensis HOM05D001245 ORTHO05D004900 1.9e-19 100.5 142 45.1
VMungo1127G1052 Vigna mungo HOM05D001245 ORTHO05D004900 1.9e-19 100.5 163 39.9
Aa31LG8G7790 Aethionema arabicum HOM05D001245 ORTHO05D004900 2.5e-19 100.1 194 40.2
Migut.D00621 Erythranthe guttata HOM05D001245 ORTHO05D004900 3.3e-19 99.8 163 44.2
TPR.G13758 Trifolium pratense HOM05D001245 ORTHO05D004900 3.3e-19 99.8 135 45.9
Aqoxy2G00231 Aquilegia oxysepala HOM05D001245 ORTHO05D004900 4.3e-19 99.4 117 49.6
Ca_18972_v3 Cicer arietinum L. HOM05D001245 ORTHO05D004900 4.3e-19 99.4 135 44.4
FAN21G1833 Fragaria x ananassa HOM05D001245 ORTHO05D004900 5.6e-19 99.0 113 49.6
FAN25G0433 Fragaria x ananassa HOM05D001245 ORTHO05D004900 5.6e-19 99.0 113 49.6
Actinidia06921 Actinidia chinensis HOM05D001245 ORTHO05D004900 9.5e-19 98.2 142 43.7
FvH4_3g28510 Fragaria vesca HOM05D001245 ORTHO05D004900 9.5e-19 98.2 113 49.6
Manes.14G003900 Manihot esculenta HOM05D001245 ORTHO05D004900 9.5e-19 98.2 185 40.0
RcHm_v2.0_Chr5g0052801 Rosa chinensis HOM05D001245 ORTHO05D004900 9.5e-19 98.2 114 49.1
GSVIVG01025236001 Vitis vinifera HOM05D001245 ORTHO05D004900 9.5e-19 98.2 99 57.6
TWI32G0811 Tripterygium wilfordii HOM05D001245 ORTHO05D004900 1.2e-18 97.8 160 41.9
Atru.chr3.2671_Atru.chr3.2672 Acer truncatum HOM05D001245 ORTHO05D004900 1.6e-18 97.4 168 42.3
MSTRG.21365 Avicennia marina HOM05D001245 ORTHO05D004900 1.6e-18 97.4 126 47.6
AUR62000145 Chenopodium quinoa HOM05D001245 ORTHO05D004900 1.6e-18 97.4 162 37.0
FAN16G0752 Fragaria x ananassa HOM05D001245 ORTHO05D004900 1.6e-18 97.4 113 48.7
MD03G1172500 Malus domestica HOM05D001245 ORTHO05D004900 1.6e-18 97.4 152 43.4
Hund07492 Selenicereus undatus HOM05D001245 ORTHO05D004900 1.6e-18 97.4 105 50.5
ClCG03G013120 Citrullus lanatus HOM05D001245 ORTHO05D004900 2.1e-18 97.1 116 50.0
MELO3C015180.2 Cucumis melo HOM05D001245 ORTHO05D004900 2.1e-18 97.1 113 50.4
FAN11G1174 Fragaria x ananassa HOM05D001245 ORTHO05D004900 2.1e-18 97.1 113 49.6
EL10Ac4g10216 Beta vulgaris HOM05D001245 ORTHO05D004900 2.8e-18 96.7 138 42.8
Glyma.12G020100 Glycine max HOM05D001245 ORTHO05D004900 2.8e-18 96.7 135 46.7
MBI17_g18830_MAGBIO Magnolia biondii HOM05D001245 ORTHO05D004900 2.8e-18 96.7 119 47.1
CSS0024429 Camellia sinensis var. sinensis HOM05D001245 ORTHO05D004900 3.6e-18 96.3 154 42.2
Eucgr.J00748 Eucalyptus grandis HOM05D001245 ORTHO05D004900 3.6e-18 96.3 147 43.5
Sed0004060 Sechium edule HOM05D001245 ORTHO05D004900 3.6e-18 96.3 113 50.4
DCAR_024415 Daucus carota HOM05D001245 ORTHO05D004900 6.1e-18 95.5 148 45.3
Manes.06G162500 Manihot esculenta HOM05D001245 ORTHO05D004900 6.1e-18 95.5 160 41.2
TAR623G0953 Trochodendron aralioides HOM05D001245 ORTHO05D004900 6.1e-18 95.5 115 48.7
Hund22008 Selenicereus undatus HOM05D001245 ORTHO05D004900 8.0e-18 95.1 112 50.9
Zm00001eb140570 Zea mays HOM05D001245 ORTHO05D004900 8.0e-18 95.1 141 46.1
CsaV3_1G042920 Cucumis sativus L. HOM05D001245 ORTHO05D004900 1.0e-17 94.7 113 49.6
Duzib170G0912 Durio zibethinus HOM05D001245 ORTHO05D004900 1.0e-17 94.7 149 43.6
Sabra09G0037600 Salix brachista HOM05D001245 ORTHO05D004900 1.0e-17 94.7 104 51.0
Cc01_g04860 Coffea canephora HOM05D001245 ORTHO05D004900 1.4e-17 94.4 143 45.5
Potri.001G256100 Populus trichocarpa HOM05D001245 ORTHO05D004900 1.4e-17 94.4 144 40.3
Dinv22163 Davidia involucrata HOM05D001245 ORTHO05D004900 1.8e-17 94.0 151 41.1
QL01p004208 Quercus lobata HOM05D001245 ORTHO05D004900 2.3e-17 93.6 162 40.1
CAN.G821.1 Capsicum annuum HOM05D001245 ORTHO05D004900 3.0e-17 93.2 117 46.2
EL10Ac4g10221 Beta vulgaris HOM05D001245 ORTHO05D004900 4.0e-17 92.8 111 47.7
SGA_v2.0_scaffold1G00741 Striga asiatica HOM05D001245 ORTHO05D004900 4.0e-17 92.8 107 48.6
AUR62019326 Chenopodium quinoa HOM05D001245 ORTHO05D004900 6.8e-17 92.0 120 45.0
Solyc01g008560.3 Solanum lycopersicum HOM05D001245 ORTHO05D004900 6.8e-17 92.0 122 45.9
Sopen01g004100 Solanum pennellii HOM05D001245 ORTHO05D004900 6.8e-17 92.0 122 45.9
ECA248G2887 Erigeron canadensis HOM05D001245 ORTHO05D004900 8.9e-17 91.7 130 49.2
Gorai.006G127100 Gossypium raimondii HOM05D001245 ORTHO05D004900 8.9e-17 91.7 112 48.2
Lj3g0006919 Lotus japonicus HOM05D001245 ORTHO05D004900 8.9e-17 91.7 170 40.0
Medtr4g076990 Medicago truncatula HOM05D001245 ORTHO05D004900 8.9e-17 91.7 129 43.4
ATR0730G209 Amborella trichopoda HOM05D001245 ORTHO05D004900 1.2e-16 91.3 186 36.0
HanXRQChr01g0023921 Helianthus annuus HOM05D001245 ORTHO05D004900 1.2e-16 91.3 145 43.4
Os01g0957000 Oryza sativa ssp. japonica HOM05D001245 ORTHO05D004900 1.2e-16 91.3 188 33.5
vmacro04136 Vaccinium macrocarpon HOM05D001245 ORTHO05D004900 1.2e-16 91.3 210 32.4
Lsat_1_v5_gn_1_77681 Lactuca sativa HOM05D001245 ORTHO05D004900 1.5e-16 90.9 168 39.9
Zm00001eb362660 Zea mays HOM05D001245 ORTHO05D004900 1.5e-16 90.9 132 46.2
CANSAT54G0430 Cannabis sativa HOM05D001245 ORTHO05D004900 2.0e-16 90.5 124 46.8
Nitab4.5_0001747g0010 Nicotiana tabacum HOM05D001245 ORTHO05D004900 2.0e-16 90.5 140 44.3
SGA_v2.0_scaffold29G12323 Striga asiatica HOM05D001245 ORTHO05D004900 2.0e-16 90.5 107 47.7
Duzib168G0839 Durio zibethinus HOM05D001245 ORTHO05D004900 2.6e-16 90.1 68 66.2
Gohir.A09G113000 Gossypium hirsutum HOM05D001245 ORTHO05D004900 2.6e-16 90.1 112 47.3
PGSC0003DMG400010485 Solanum tuberosum HOM05D001245 ORTHO05D004900 2.6e-16 90.1 122 45.1
HanXRQChr11g0343641 Helianthus annuus HOM05D001245 ORTHO05D004900 3.4e-16 89.7 141 44.7
Peaxi162Scf00032g00821 Petunia axillaris HOM05D001245 ORTHO05D004900 3.4e-16 89.7 147 40.8
Pp3c25_12850 Physcomitrium patens HOM05D001245 ORTHO05D004900 3.4e-16 89.7 133 37.6
arahy.Tifrunner.gnm1.ann1.9YG71W Arachis hypogaea HOM05D001245 ORTHO05D004900 5.7e-16 89.0 133 45.1
arahy.Tifrunner.gnm1.ann1.J55WMV Arachis hypogaea HOM05D001245 ORTHO05D004900 5.7e-16 89.0 133 45.1
Glyma.11G093600 Glycine max HOM05D001245 ORTHO05D004900 5.7e-16 89.0 111 52.3
Pp3c6_3660 Physcomitrium patens HOM05D001245 ORTHO05D004900 7.5e-16 88.6 159 35.8
Cpa.g.sc84.35 Carica papaya HOM05D001245 ORTHO05D004900 1.3e-15 87.8 99 52.5
Nitab4.5_0009763g0010 Nicotiana tabacum HOM05D001245 ORTHO05D004900 1.3e-15 87.8 140 42.9
Haze_23162 Corylus avellana HOM05D001245 ORTHO05D004900 1.7e-15 87.4 116 47.4
THA.LOC104817912 Tarenaya hassleriana HOM05D001245 ORTHO05D004900 1.7e-15 87.4 115 47.0
BraA01t03489Z Brassica rapa HOM05D001245 ORTHO05D004900 2.2e-15 87.0 166 39.8
Cfa009791 Carpinus fangiana HOM05D001245 ORTHO05D004900 2.2e-15 87.0 116 46.6
C01p43200 Brassica napus HOM05D001245 ORTHO05D004900 3.7e-15 86.3 166 40.4
MD11G1190400 Malus domestica HOM05D001245 ORTHO05D004900 3.7e-15 86.3 117 44.4
A01p33780 Brassica napus HOM05D001245 ORTHO05D004900 4.9e-15 85.9 166 39.8
BolC1t04266H Brassica oleracea HOM05D001245 ORTHO05D004900 4.9e-15 85.9 166 40.4
A05p27650 Brassica napus HOM05D001245 ORTHO05D004900 6.4e-15 85.5 188 37.8
BraA05t21658Z Brassica rapa HOM05D001245 ORTHO05D004900 6.4e-15 85.5 189 38.6
Os05g0388400 Oryza sativa ssp. japonica HOM05D001245 ORTHO05D004900 6.4e-15 85.5 144 38.2
CiPaw.14G117400 Carya illinoinensis HOM05D001245 ORTHO05D004900 8.3e-15 85.1 136 44.1
Sc16g0011310 Simmondsia chinensis HOM05D001245 ORTHO05D004900 8.3e-15 85.1 106 46.2
BcaB04g20614 Brassica carinata HOM05D001245 ORTHO05D004900 1.1e-14 84.7 169 38.5
HanXRQChr14g0432931 Helianthus annuus HOM05D001245 ORTHO05D004900 1.4e-14 84.3 120 42.5
Ah.06g193940 Amaranthus hybridus HOM05D001245 ORTHO05D004900 1.8e-14 84.0 147 39.5
BcaB06g26174 Brassica carinata HOM05D001245 ORTHO05D004900 1.8e-14 84.0 189 37.0
Lj2C626G1 Lonicera japonica HOM05D001245 ORTHO05D004900 1.8e-14 84.0 70 61.4
Sabra16G0156300 Salix brachista HOM05D001245 ORTHO05D004900 1.8e-14 84.0 166 34.9
BcaB04g19134 Brassica carinata HOM05D001245 ORTHO05D004900 2.4e-14 83.6 159 40.3
BcaC09g49046 Brassica carinata HOM05D001245 ORTHO05D004900 2.4e-14 83.6 166 39.8
CARHR096910 Cardamine hirsuta HOM05D001245 ORTHO05D004900 2.4e-14 83.6 148 39.9
Dinv36237 Davidia involucrata HOM05D001245 ORTHO05D004900 2.4e-14 83.6 99 49.5
SHI29795 Sapria himalayana HOM05D001245 ORTHO05D004900 2.4e-14 83.6 138 41.3
unitig_0.g293 Utricularia gibba HOM05D001245 ORTHO05D004900 3.2e-14 83.2 66 65.2
Sp3g19030 Schrenkiella parvula HOM05D001245 ORTHO05D004900 4.1e-14 82.8 165 40.6
Carub.0003s2097 Capsella rubella HOM05D001245 ORTHO05D004900 7.0e-14 82.0 109 48.6
BcaC05g28218 Brassica carinata HOM05D001245 ORTHO05D004900 2.7e-13 80.1 148 41.2
C05p43020 Brassica napus HOM05D001245 ORTHO05D004900 2.7e-13 80.1 148 41.2
BolC5t33033H Brassica oleracea HOM05D001245 ORTHO05D004900 2.7e-13 80.1 148 41.2
AT3G21070 Arabidopsis thaliana HOM05D001245 ORTHO05D004900 3.5e-13 79.7 156 40.4
Migut.N02339 Erythranthe guttata HOM05D001245 ORTHO05D004900 3.5e-13 79.7 189 36.0
C03p51430 Brassica napus HOM05D001245 ORTHO05D004900 4.6e-13 79.3 150 40.7
AL3G35020 Arabidopsis lyrata HOM05D001245 ORTHO05D004900 1.0e-12 78.2 61 65.6
A03p42010 Brassica napus HOM05D001245 ORTHO05D004900 1.3e-12 77.8 153 40.5
BraA03t13355Z Brassica rapa HOM05D001245 ORTHO05D004900 1.3e-12 77.8 158 39.9
CDE02G0159 Ceratophyllum demersum HOM05D001245 ORTHO05D004900 1.3e-12 77.8 110 47.3
BcaC01g03528 Brassica carinata HOM05D004356 ORTHO05D004900 1.7e-12 77.4 174 37.4
Thhalv10020469m.g Eutrema salsugineum HOM05D001245 ORTHO05D004900 1.7e-12 77.4 165 40.0
BolC3t17428H Brassica oleracea HOM05D001245 ORTHO05D004900 5.0e-12 75.9 179 36.3
Thhalv10009421m.g Eutrema salsugineum HOM05D001245 ORTHO05D004900 5.0e-12 75.9 157 41.4
CDE06G1045 Ceratophyllum demersum HOM05D001245 ORTHO05D004900 4.3e-11 72.8 111 44.1
DCAR_002082 Daucus carota HOM05D001245 ORTHO05D004900 4.3e-11 72.8 57 64.9
Gohir.D09G109500 Gossypium hirsutum HOM05D001245 ORTHO05D004900 4.0e-09 66.2 116 37.9
CiPaw.13G157600 Carya illinoinensis HOM05D001245 ORTHO05D004900 6.8e-09 65.5 113 43.4
CiPaw.13G156400 Carya illinoinensis HOM05D001245 ORTHO05D004900 2.0e-08 63.9 113 41.6
CiPaw.13G157300 Carya illinoinensis HOM05D001245 ORTHO05D004900 3.4e-08 63.2 114 42.1
Lalb_Chr03g0024471 Lupinus albus HOM05D001245 ORTHO05D004900 3.4e-08 63.2 136 36.8
Pp3c10_23020 Physcomitrium patens HOM05D001245 ORTHO05D004900 9.8e-08 61.6 127 37.8
Ciclev10014881m.g Citrus clementina HOM05D001245 ORTHO05D004900 2.4e-06 57.0 42 69.0


User provided reference genes

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