Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_37300 Sequoiadendron giganteum HOM05D006770 ORTHO05D008356 6.9e-295 1016.5 501 100.0
SEGI_07142 Sequoiadendron giganteum HOM05D006770 ORTHO05D008356 3.3e-180 635.6 420 78.1
PSO541G3292 Papaver somniferum HOM05D006770 ORTHO05D008356 4.7e-118 429.1 416 52.6
TAR625G0814 Trochodendron aralioides HOM05D006770 ORTHO05D008356 3.0e-117 426.4 412 53.4
Nn5g30983 Nelumbo nucifera HOM05D006770 ORTHO05D008356 2.0e-116 423.7 416 53.4
PSO675G2016 Papaver somniferum HOM05D006770 ORTHO05D008356 4.4e-116 422.5 413 52.3
Aqoxy6G01625 Aquilegia oxysepala HOM05D006770 ORTHO05D008356 1.1e-114 417.9 405 51.9
CDE04G3028 Ceratophyllum demersum HOM05D006770 ORTHO05D008356 2.0e-113 413.7 391 53.2
ECA246G3919 Erigeron canadensis HOM05D006770 ORTHO05D008356 2.9e-112 409.8 403 52.9
FAN18G3713 Fragaria x ananassa HOM05D006770 ORTHO05D008356 8.5e-112 408.3 399 50.9
FvH4_5g25440 Fragaria vesca HOM05D006770 ORTHO05D008356 1.5e-111 407.5 399 50.9
QL02p014697 Quercus lobata HOM05D006770 ORTHO05D008356 1.5e-111 407.5 395 51.9
RcHm_v2.0_Chr5g0066911 Rosa chinensis HOM05D006770 ORTHO05D008356 3.2e-111 406.4 414 49.8
MD00G1136800 Malus domestica HOM05D006770 ORTHO05D008356 4.2e-111 406.0 405 49.1
CiPaw.07G136700 Carya illinoinensis HOM05D006770 ORTHO05D008356 1.6e-110 404.1 380 52.6
AUR62040821 Chenopodium quinoa HOM05D006770 ORTHO05D008356 3.6e-110 402.9 431 50.1
Duzib041G0267 Durio zibethinus HOM05D006770 ORTHO05D008356 6.1e-110 402.1 401 52.4
CSS0047097 Camellia sinensis var. sinensis HOM05D006770 ORTHO05D008356 8.0e-110 401.7 378 53.7
Prupe.5G010100 Prunus persica HOM05D006770 ORTHO05D008356 1.0e-109 401.4 391 50.6
FAN08G2065 Fragaria x ananassa HOM05D006770 ORTHO05D008356 1.4e-109 401.0 399 50.1
Thecc.08G061300 Theobroma cacao HOM05D006770 ORTHO05D008356 1.4e-109 401.0 410 51.2
FAN13G3072 Fragaria x ananassa HOM05D006770 ORTHO05D008356 1.8e-109 400.6 399 49.6
Potri.005G252300 Populus trichocarpa HOM05D006770 ORTHO05D008356 2.3e-109 400.2 452 46.7
Cfa014101 Carpinus fangiana HOM05D006770 ORTHO05D008356 2.0e-108 397.1 411 50.4
Haze_22817 Corylus avellana HOM05D006770 ORTHO05D008356 5.7e-108 395.6 384 51.0
Sc02g0009170 Simmondsia chinensis HOM05D006770 ORTHO05D008356 5.7e-108 395.6 428 49.3
Rhsim13G0054100 Rhododendron simsii HOM05D006770 ORTHO05D008356 7.5e-108 395.2 433 48.3
Sabra05G0195800 Salix brachista HOM05D006770 ORTHO05D008356 9.8e-108 394.8 453 45.7
AUR62035131 Chenopodium quinoa HOM05D006770 ORTHO05D008356 1.3e-107 394.4 408 50.5
Lsat_1_v5_gn_3_16821 Lactuca sativa HOM05D006770 ORTHO05D008356 2.8e-107 393.3 435 46.9
ATR0807G062 Amborella trichopoda HOM05D006770 ORTHO05D008356 1.8e-106 390.6 405 49.6
TWI79G0343 Tripterygium wilfordii HOM05D006770 ORTHO05D008356 7.0e-106 388.7 380 50.5
Atru.chr13.120 Acer truncatum HOM05D006770 ORTHO05D008356 9.1e-106 388.3 402 50.2
Medtr4g084940 Medicago truncatula HOM05D006770 ORTHO05D008356 9.1e-106 388.3 394 51.0
HPP92_007114 Vanilla planifolia HOM05D006770 ORTHO05D008356 1.2e-105 387.9 423 49.6
EL10Ac1g01921 Beta vulgaris HOM05D006770 ORTHO05D008356 2.0e-105 387.1 429 47.8
Phvul.001G002700 Phaseolus vulgaris HOM05D006770 ORTHO05D008356 2.0e-105 387.1 400 49.5
HanXRQChr06g0167391 Helianthus annuus HOM05D006770 ORTHO05D008356 2.7e-105 386.7 397 50.4
Hund01783 Selenicereus undatus HOM05D006770 ORTHO05D008356 2.7e-105 386.7 413 49.4
Gohir.A11G329900 Gossypium hirsutum HOM05D006770 ORTHO05D008356 3.5e-105 386.3 422 48.3
Oeu032124.1 Olea europaea HOM05D006770 ORTHO05D008356 3.5e-105 386.3 401 49.6
Solyc02g070010.1 Solanum lycopersicum HOM05D006770 ORTHO05D008356 4.5e-105 386.0 417 49.2
VMungo0251G0866 Vigna mungo HOM05D006770 ORTHO05D008356 4.5e-105 386.0 397 49.6
COL.COLO4_36416 Corchorus olitorius HOM05D006770 ORTHO05D008356 5.9e-105 385.6 384 52.1
Glyma.07G217000 Glycine max HOM05D006770 ORTHO05D008356 5.9e-105 385.6 410 48.8
Sopen02g019170 Solanum pennellii HOM05D006770 ORTHO05D008356 5.9e-105 385.6 417 49.2
Nitab4.5_0001583g0140 Nicotiana tabacum HOM05D006770 ORTHO05D008356 7.7e-105 385.2 396 50.3
PGSC0003DMG400021117 Solanum tuberosum HOM05D006770 ORTHO05D008356 1.7e-104 384.0 394 50.3
CAN.G79.22 Capsicum annuum HOM05D006770 ORTHO05D008356 2.3e-104 383.6 383 50.7
SalBow7G3490 Salvia bowleyana HOM05D006770 ORTHO05D008356 3.8e-104 382.9 377 50.1
Glyma.20G013900 Glycine max HOM05D006770 ORTHO05D008356 5.0e-104 382.5 410 48.5
Gorai.006G274800 Gossypium raimondii HOM05D006770 ORTHO05D008356 1.1e-103 381.3 422 47.4
Lalb_Chr05g0219451 Lupinus albus HOM05D006770 ORTHO05D008356 1.5e-103 380.9 380 50.8
TPR.G35412 Trifolium pratense HOM05D006770 ORTHO05D008356 1.9e-103 380.6 404 49.0
CAN.G79.18 Capsicum annuum HOM05D006770 ORTHO05D008356 2.5e-103 380.2 383 50.4
CsaV3_1G014370 Cucumis sativus L. HOM05D006770 ORTHO05D008356 3.3e-103 379.8 403 47.9
THA.LOC104813750 Tarenaya hassleriana HOM05D006770 ORTHO05D008356 3.3e-103 379.8 402 47.3
Gohir.A13G000201 Gossypium hirsutum HOM05D006770 ORTHO05D008356 4.2e-103 379.4 401 48.9
Nitab4.5_0001225g0180 Nicotiana tabacum HOM05D006770 ORTHO05D008356 5.5e-103 379.0 380 50.0
Gohir.D08G275542 Gossypium hirsutum HOM05D006770 ORTHO05D008356 7.2e-103 378.6 401 48.6
Gorai.004G294200 Gossypium raimondii HOM05D006770 ORTHO05D008356 1.2e-102 377.9 422 46.9
Manes.05G095800 Manihot esculenta HOM05D006770 ORTHO05D008356 1.6e-102 377.5 414 48.6
Ciclev10000935m.g Citrus clementina HOM05D006770 ORTHO05D008356 3.6e-102 376.3 404 48.5
Gohir.D08G007000 Gossypium hirsutum HOM05D006770 ORTHO05D008356 6.1e-102 375.6 415 48.0
Manes.17G081600 Manihot esculenta HOM05D006770 ORTHO05D008356 1.8e-101 374.0 402 48.3
Migut.M00215 Erythranthe guttata HOM05D006770 ORTHO05D008356 2.3e-101 373.6 409 48.4
Ca_25485_v3 Cicer arietinum L. HOM05D006770 ORTHO05D008356 4.0e-101 372.9 406 48.3
Sc02g0009150 Simmondsia chinensis HOM05D006770 ORTHO05D008356 1.5e-100 370.9 412 47.3
Lj4g0024175 Lotus japonicus HOM05D006770 ORTHO05D008356 3.4e-100 369.8 407 48.4
Cc09_g04530 Coffea canephora HOM05D006770 ORTHO05D008356 4.4e-100 369.4 409 48.2
Psat7g128200 Pisum sativum HOM05D006770 ORTHO05D008356 9.8e-100 368.2 395 49.1
Dinv31957 Davidia involucrata HOM05D006770 ORTHO05D008356 1.7e-99 367.5 348 53.7
BcaC06g31269 Brassica carinata HOM05D006770 ORTHO05D008356 2.2e-99 367.1 395 48.1
BolC7t43787H Brassica oleracea HOM05D006770 ORTHO05D008356 2.8e-99 366.7 405 46.9
CANSAT64G1545 Cannabis sativa HOM05D006770 ORTHO05D008356 2.8e-99 366.7 397 47.4
MELO3C004826.2 Cucumis melo HOM05D006770 ORTHO05D008356 2.8e-99 366.7 396 47.7
Aa31LG2G8050 Aethionema arabicum HOM05D006770 ORTHO05D008356 4.9e-99 365.9 395 47.1
BcaC06g34103 Brassica carinata HOM05D006770 ORTHO05D008356 8.3e-99 365.2 405 47.2
Thhalv10004104m.g Eutrema salsugineum HOM05D006770 ORTHO05D008356 8.3e-99 365.2 375 48.8
C07p32660 Brassica napus HOM05D006770 ORTHO05D008356 1.8e-98 364.0 405 46.9
Peaxi162Scf00670g00024 Petunia axillaris HOM05D006770 ORTHO05D008356 2.4e-98 363.6 374 50.5
Gohir.A01G231900 Gossypium hirsutum HOM05D006770 ORTHO05D008356 3.2e-98 363.2 413 46.5
AL5G10970 Arabidopsis lyrata HOM05D006770 ORTHO05D008356 2.0e-97 360.5 390 46.9
A06p43970 Brassica napus HOM05D006770 ORTHO05D008356 2.3e-96 357.1 377 48.8
DCAR_024417 Daucus carota HOM05D006770 ORTHO05D008356 2.9e-96 356.7 405 46.7
Zm00001eb391890 Zea mays HOM05D006770 ORTHO05D008356 2.9e-96 356.7 406 47.0
Sp2g13280 Schrenkiella parvula HOM05D006770 ORTHO05D008356 3.9e-96 356.3 375 47.7
AT2G01860 Arabidopsis thaliana HOM05D006770 ORTHO05D008356 4.3e-95 352.8 376 48.1
PGR031G0937 Punica granatum HOM05D006770 ORTHO05D008356 1.2e-94 351.3 420 44.3
BraA06t27272Z Brassica rapa HOM05D006770 ORTHO05D008356 1.6e-94 350.9 372 48.1
CARHR144420 Cardamine hirsuta HOM05D006770 ORTHO05D008356 2.8e-94 350.1 375 47.7
Ah.00g000990 Amaranthus hybridus HOM05D006770 ORTHO05D008356 4.7e-94 349.4 410 46.1
vmacro02830 Vaccinium macrocarpon HOM05D006770 ORTHO05D008356 6.1e-94 349.0 335 52.5
Gorai.009G456100 Gossypium raimondii HOM05D006770 ORTHO05D008356 3.1e-93 346.7 422 44.8
Carub.0005s0082 Capsella rubella HOM05D006770 ORTHO05D008356 6.8e-93 345.5 394 45.7
Actinidia23351 Actinidia chinensis HOM05D006770 ORTHO05D008356 1.7e-91 340.9 359 51.3
Gorai.007G379700 Gossypium raimondii HOM05D006770 ORTHO05D008356 2.0e-89 334.0 380 46.6
Os02g0118000 Oryza sativa ssp. japonica HOM05D006770 ORTHO05D008356 3.0e-88 330.1 398 45.5
Lj9P204T39 Lonicera japonica HOM05D006770 ORTHO05D008356 4.0e-85 319.7 340 49.7
SGA_v2.0_scaffold538G52786 Striga asiatica HOM05D006770 ORTHO05D008356 2.3e-80 303.9 396 42.4
Atru.chr13.118 Acer truncatum HOM05D006770 ORTHO05D008356 3.9e-80 303.1 402 42.0
MD16G1284100 Malus domestica HOM05D006770 ORTHO05D008356 1.9e-79 300.8 358 43.9
SGA_v2.0_scaffold476G52129 Striga asiatica HOM05D006770 ORTHO05D008356 1.9e-79 300.8 401 42.1
Sed0018053 Sechium edule HOM05D006770 ORTHO05D008356 1.3e-54 218.4 277 43.3
Gohir.D11G349500 Gossypium hirsutum HOM05D006770 ORTHO05D008356 1.6e-54 218.0 200 53.0
AagrBONN_evm.TU.Sc2ySwM_117.3058 Anthoceros agrestis HOM05D006770 ORTHO05D008356 7.4e-47 192.6 310 36.8
Gohir.A06G000350 Gossypium hirsutum HOM05D006770 ORTHO05D008356 2.8e-46 190.7 192 49.0
ClCG01G012950 Citrullus lanatus HOM05D006770 ORTHO05D008356 9.0e-37 159.1 176 47.7
Actinidia12910 Actinidia chinensis HOM05D006770 ORTHO05D008356 3.4e-36 157.1 278 37.1
CAN.G733.12 Capsicum annuum HOM05D006770 ORTHO05D008356 3.2e-34 150.6 203 42.9
Mapoly0166s0014 Marchantia polymorpha HOM05D006770 ORTHO05D008356 1.7e-22 111.7 224 30.4
CBR_g51330 Chara braunii HOM05D009772 ORTHO05D000353 5.3e-21 106.7 324 25.0
Pp3c13_18720 Physcomitrium patens HOM05D006770 ORTHO05D008356 1.8e-16 91.7 202 27.7
Pp3c13_18722 Physcomitrium patens HOM05D006770 ORTHO05D008356 1.8e-16 91.7 202 27.7
VMungo0331G1801 Vigna mungo HOM05D002295 ORTHO05D008356 8.8e-16 89.4 65 66.2
CAN.G332.6 Capsicum annuum HOM05D006770 ORTHO05D008356 1.1e-15 89.0 106 43.4
VMungo0720G0800 Vigna mungo HOM05D006770 ORTHO05D008356 7.0e-13 79.7 133 36.1
Medtr1g008310 Medicago truncatula HOM05D003689 ORTHO05D003950 4.2e-10 70.5 153 29.4
Lsat_1_v5_gn_2_98881 Lactuca sativa HOM05D000001 ORTHO05D000003 2.7e-09 67.8 250 23.6
Actinidia33437 Actinidia chinensis HOM05D000001 ORTHO05D000003 3.6e-09 67.4 239 23.0
Carub.0006s2350 Capsella rubella HOM05D003689 ORTHO05D003950 1.4e-08 65.5 144 26.4
Sp2g21900 Schrenkiella parvula HOM05D003689 ORTHO05D003950 1.8e-08 65.1 144 27.1
AT5G25630 Arabidopsis thaliana HOM05D003689 ORTHO05D003950 3.0e-08 64.3 137 28.5
arahy.Tifrunner.gnm1.ann1.BYDN2S Arachis hypogaea HOM05D007322 ORTHO05D009029 4.0e-08 63.9 125 29.6
arahy.Tifrunner.gnm1.ann1.YY4I9I Arachis hypogaea HOM05D007322 ORTHO05D009029 4.0e-08 63.9 125 29.6
HPP92_011129 Vanilla planifolia HOM05D000001 ORTHO05D009071 4.0e-08 63.9 236 24.6
Thhalv10022551m.g Eutrema salsugineum HOM05D003056 ORTHO05D003422 8.8e-08 62.8 193 25.4
DCAR_017247 Daucus carota HOM05D000891 ORTHO05D000761 1.1e-07 62.4 170 26.5
CDE04G3773 Ceratophyllum demersum HOM05D003689 ORTHO05D003950 1.5e-07 62.0 142 29.6
Sc01g0003430 Simmondsia chinensis HOM05D000001 ORTHO05D011176 2.6e-07 61.2 240 23.3
HPP92_002379 Vanilla planifolia HOM05D005862 ORTHO05D007731 3.3e-07 60.8 171 23.4
CAN.G649.15 Capsicum annuum HOM05D001779 ORTHO05D001753 4.4e-07 60.5 118 31.4
Nn4g26090 Nelumbo nucifera HOM05D016421 ORTHO05D018216 4.4e-07 60.5 259 23.2
Nitab4.5_0003410g0050 Nicotiana tabacum HOM05D000891 ORTHO05D000761 5.7e-07 60.1 159 25.8
Sabra01G0146900 Salix brachista HOM05D006749 ORTHO05D008352 9.7e-07 59.3 136 28.7
Solyc01g006500.4 Solanum lycopersicum HOM05D001779 ORTHO05D001753 9.7e-07 59.3 126 31.0
Sopen01g002480 Solanum pennellii HOM05D001779 ORTHO05D001753 9.7e-07 59.3 126 31.0
PGSC0003DMG400032206 Solanum tuberosum HOM05D001779 ORTHO05D001753 9.7e-07 59.3 126 31.0
HPP92_006127 Vanilla planifolia HOM05D002479 ORTHO05D002675 1.3e-06 58.9 126 27.0
DCAR_012472 Daucus carota HOM05D000300 ORTHO05D000383 1.7e-06 58.5 174 27.0
Haze_24901 Corylus avellana HOM05D000001 ORTHO05D000003 2.8e-06 57.8 176 23.9
Gohir.D02G000400 Gossypium hirsutum HOM05D006770 ORTHO05D008356 2.8e-06 57.8 118 31.4
Solyc02g085650.4 Solanum lycopersicum HOM05D001985 ORTHO05D000761 2.8e-06 57.8 209 23.9
ATR0315G024 Amborella trichopoda HOM05D003689 ORTHO05D003950 3.7e-06 57.4 105 30.5
Lsat_1_v5_gn_1_52140 Lactuca sativa HOM05D004824 ORTHO05D003903 3.7e-06 57.4 164 29.3
Nn8g40038 Nelumbo nucifera HOM05D006258 ORTHO05D007961 3.7e-06 57.4 128 27.3
Psat1g146880 Pisum sativum HOM05D003056 ORTHO05D003422 3.7e-06 57.4 146 24.7
Potri.001G180000 Populus trichocarpa HOM05D006749 ORTHO05D008352 3.7e-06 57.4 136 27.9
Hma1.2p1_1303F.1_g274420 Hydrangea macrophylla HOM05D003056 ORTHO05D003422 4.8e-06 57.0 187 24.1
AagrBONN_evm.TU.Sc2ySwM_117.2072 Anthoceros agrestis HOM05D031438 ORTHO05D023573 6.3e-06 56.6 146 28.1
VMungo1215G1169 Vigna mungo HOM05D007173 ORTHO05D009151 6.3e-06 56.6 301 21.6


User provided reference genes

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