Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_37277 Sequoiadendron giganteum HOM05D003592 ORTHO05D004208 1.3e-69 266.2 126 100.0
SEGI_20020 Sequoiadendron giganteum HOM05D003592 ORTHO05D004208 1.4e-50 203.0 128 71.9
SEGI_16015 Sequoiadendron giganteum HOM05D003592 ORTHO05D004208 2.4e-23 112.5 88 60.2
Dinv29178 Davidia involucrata HOM05D003592 ORTHO05D004208 2.5e-20 102.4 125 48.0
Actinidia08730 Actinidia chinensis HOM05D003592 ORTHO05D004208 7.3e-20 100.9 119 49.6
CSS0031198 Camellia sinensis var. sinensis HOM05D003592 ORTHO05D004208 9.6e-20 100.5 115 48.7
CSS0018534 Camellia sinensis var. sinensis HOM05D003592 ORTHO05D004208 2.8e-19 99.0 115 46.1
Hma1.2p1_1235F.1_g269160 Hydrangea macrophylla HOM05D003592 ORTHO05D004208 3.6e-19 98.6 118 50.0
TAR629G1675 Trochodendron aralioides HOM05D003592 ORTHO05D004208 1.1e-18 97.1 116 45.7
Rhsim03G0219900 Rhododendron simsii HOM05D003592 ORTHO05D004208 1.4e-18 96.7 117 48.7
vmacro06490 Vaccinium macrocarpon HOM05D003592 ORTHO05D004208 2.4e-18 95.9 116 47.4
TWI34G2026 Tripterygium wilfordii HOM05D003592 ORTHO05D004208 4.0e-18 95.1 89 53.9
MBI04_g21153_MAGBIO Magnolia biondii HOM05D003592 ORTHO05D004208 5.3e-18 94.7 121 45.5
SEGI_00089 Sequoiadendron giganteum HOM05D003592 ORTHO05D004208 1.2e-17 93.6 89 50.6
Atru.chr12.2033 Acer truncatum HOM05D003592 ORTHO05D004208 1.5e-17 93.2 103 49.5
Actinidia34296 Actinidia chinensis HOM05D003592 ORTHO05D004208 3.4e-17 92.0 122 47.5
Dinv17270 Davidia involucrata HOM05D003592 ORTHO05D004208 5.8e-17 91.3 124 44.4
MSTRG.8553 Avicennia marina HOM05D003592 ORTHO05D004208 7.6e-17 90.9 113 41.6
Gorai.003G051000 Gossypium raimondii HOM05D003592 ORTHO05D004208 9.9e-17 90.5 87 52.9
MBI04_g29825_MAGBIO Magnolia biondii HOM05D000463 ORTHO05D013433 1.3e-16 90.1 84 53.6
Gohir.D03G049600 Gossypium hirsutum HOM05D003592 ORTHO05D004208 1.7e-16 89.7 87 52.9
Manes.09G123900 Manihot esculenta HOM05D003592 ORTHO05D004208 1.7e-16 89.7 89 51.7
Cc02_g00450 Coffea canephora HOM05D003592 ORTHO05D004208 2.2e-16 89.4 99 48.5
Cc05_g00720 Coffea canephora HOM05D003592 ORTHO05D004208 2.2e-16 89.4 99 48.5
Duzib177G0010 Durio zibethinus HOM05D003592 ORTHO05D004208 2.9e-16 89.0 93 49.5
Actinidia18695 Actinidia chinensis HOM05D003592 ORTHO05D004208 4.9e-16 88.2 112 46.4
Actinidia28268 Actinidia chinensis HOM05D003592 ORTHO05D004208 4.9e-16 88.2 112 47.3
Gohir.A02G139000 Gossypium hirsutum HOM05D003592 ORTHO05D004208 4.9e-16 88.2 87 52.9
DCAR_010550 Daucus carota HOM05D003592 ORTHO05D004208 6.4e-16 87.8 112 43.8
Duzib106G0206 Durio zibethinus HOM05D003592 ORTHO05D004208 1.9e-15 86.3 113 43.4
Rhsim09G0211800 Rhododendron simsii HOM05D003592 ORTHO05D004208 3.2e-15 85.5 82 51.2
vmacro10180 Vaccinium macrocarpon HOM05D003592 ORTHO05D004208 3.2e-15 85.5 80 52.5
Migut.F00955 Erythranthe guttata HOM05D003592 ORTHO05D004208 4.2e-15 85.1 88 50.0
FAN01G2998 Fragaria x ananassa HOM05D003592 ORTHO05D004208 4.2e-15 85.1 87 48.3
Oeu038117.1 Olea europaea HOM05D003592 ORTHO05D004208 4.2e-15 85.1 89 50.6
Oeu063742.2 Olea europaea HOM05D003592 ORTHO05D004208 4.2e-15 85.1 87 50.6
Sc13g0010720 Simmondsia chinensis HOM05D003592 ORTHO05D004208 4.2e-15 85.1 120 42.5
Prupe.2G323400 Prunus persica HOM05D003592 ORTHO05D004208 5.4e-15 84.7 90 51.1
Manes.08G164900 Manihot esculenta HOM05D003592 ORTHO05D004208 7.1e-15 84.3 86 52.3
MSTRG.14 Avicennia marina HOM05D003592 ORTHO05D004208 9.3e-15 84.0 114 40.4
COL.COLO4_08909 Corchorus olitorius HOM05D003592 ORTHO05D004208 9.3e-15 84.0 123 39.8
FAN03G1827 Fragaria x ananassa HOM05D003592 ORTHO05D004208 9.3e-15 84.0 87 47.1
Solyc03g096840.4 Solanum lycopersicum HOM05D003592 ORTHO05D004208 9.3e-15 84.0 126 42.1
FvH4_7g33540 Fragaria vesca HOM05D003592 ORTHO05D004208 1.2e-14 83.6 87 48.3
FAN10G0119 Fragaria x ananassa HOM05D003592 ORTHO05D004208 1.2e-14 83.6 87 47.1
FAN10G2200 Fragaria x ananassa HOM05D003592 ORTHO05D004208 1.2e-14 83.6 87 47.1
PGSC0003DMG400000541 Solanum tuberosum HOM05D003592 ORTHO05D004208 1.6e-14 83.2 93 48.4
Potri.013G081700 Populus trichocarpa HOM05D003592 ORTHO05D004208 2.1e-14 82.8 89 49.4
GSVIVG01024455001 Vitis vinifera HOM05D003592 ORTHO05D004208 2.1e-14 82.8 114 41.2
Aqoxy161s001 Aquilegia oxysepala HOM05D003592 ORTHO05D004208 2.7e-14 82.4 83 49.4
Aqoxy161s002 Aquilegia oxysepala HOM05D003592 ORTHO05D004208 2.7e-14 82.4 83 49.4
Aqoxy3G02065 Aquilegia oxysepala HOM05D003592 ORTHO05D004208 2.7e-14 82.4 83 49.4
Aqoxy3G02066 Aquilegia oxysepala HOM05D003592 ORTHO05D004208 2.7e-14 82.4 83 49.4
Migut.F00107 Erythranthe guttata HOM05D003592 ORTHO05D004208 2.7e-14 82.4 82 48.8
Eucgr.A02954 Eucalyptus grandis HOM05D003592 ORTHO05D004208 2.7e-14 82.4 120 39.2
EL10Ac3g05109 Beta vulgaris HOM05D003592 ORTHO05D004208 3.5e-14 82.0 91 49.5
AUR62005925 Chenopodium quinoa HOM05D003592 ORTHO05D004208 3.5e-14 82.0 85 51.8
Ca_24466_v3 Cicer arietinum L. HOM05D003592 ORTHO05D004208 3.5e-14 82.0 121 40.5
Oeu061060.1 Olea europaea HOM05D003592 ORTHO05D004208 4.6e-14 81.6 92 45.7
Peaxi162Scf01650g00057 Petunia axillaris HOM05D003592 ORTHO05D004208 4.6e-14 81.6 88 45.5
Sc19g0000280 Simmondsia chinensis HOM05D003592 ORTHO05D004208 4.6e-14 81.6 118 42.4
Sopen03g027580 Solanum pennellii HOM05D003592 ORTHO05D004208 4.6e-14 81.6 95 47.4
Thecc.05G207700 Theobroma cacao HOM05D003592 ORTHO05D004208 4.6e-14 81.6 81 51.9
AUR62018884 Chenopodium quinoa HOM05D003592 ORTHO05D004208 6.0e-14 81.3 85 50.6
Ciclev10013115m.g Citrus clementina HOM05D003592 ORTHO05D004208 6.0e-14 81.3 88 50.0
CDE12G0763 Ceratophyllum demersum HOM05D003592 ORTHO05D004208 7.9e-14 80.9 114 41.2
Nitab4.5_0000021g0300 Nicotiana tabacum HOM05D003592 ORTHO05D004208 7.9e-14 80.9 90 47.8
Cpa.g.sc39.41 Carica papaya HOM05D003592 ORTHO05D004208 1.0e-13 80.5 84 50.0
Eucgr.A02956 Eucalyptus grandis HOM05D003592 ORTHO05D004208 1.0e-13 80.5 90 47.8
SalBow2G2852 Salvia bowleyana HOM05D003592 ORTHO05D004208 1.0e-13 80.5 85 47.1
SGA_v2.0_scaffold18G08501 Striga asiatica HOM05D003592 ORTHO05D004208 1.3e-13 80.1 82 46.3
TWI32G0722 Tripterygium wilfordii HOM05D003592 ORTHO05D004208 1.3e-13 80.1 90 47.8
CDE01G0008 Ceratophyllum demersum HOM05D003592 ORTHO05D004208 1.7e-13 79.7 90 46.7
Eucgr.L03660 Eucalyptus grandis HOM05D003592 ORTHO05D004208 1.7e-13 79.7 120 39.2
Nitab4.5_0002302g0040 Nicotiana tabacum HOM05D003592 ORTHO05D004208 1.7e-13 79.7 90 47.8
PGSC0003DMG400026933 Solanum tuberosum HOM05D003592 ORTHO05D004208 2.3e-13 79.3 108 45.4
Haze_00584 Corylus avellana HOM05D003592 ORTHO05D004208 3.0e-13 79.0 115 41.7
MELO3C017620.2 Cucumis melo HOM05D003592 ORTHO05D004208 3.0e-13 79.0 123 41.5
MD07G1305300 Malus domestica HOM05D003592 ORTHO05D004208 3.0e-13 79.0 91 44.0
CARHR196060 Cardamine hirsuta HOM05D003592 ORTHO05D004208 3.9e-13 78.6 120 36.7
Sabra13G0071400 Salix brachista HOM05D003592 ORTHO05D004208 3.9e-13 78.6 104 43.3
SGA_v2.0_scaffold165G38224 Striga asiatica HOM05D003592 ORTHO05D004208 5.1e-13 78.2 87 48.3
ATR0829G020 Amborella trichopoda HOM05D003592 ORTHO05D004208 6.6e-13 77.8 88 43.2
arahy.Tifrunner.gnm1.ann1.F45BIC Arachis hypogaea HOM05D003592 ORTHO05D004208 6.6e-13 77.8 125 43.2
MSTRG.26939 Avicennia marina HOM05D003592 ORTHO05D004208 6.6e-13 77.8 82 47.6
Nn3g19269 Nelumbo nucifera HOM05D003592 ORTHO05D004208 6.6e-13 77.8 126 43.7
PGR042G3489 Punica granatum HOM05D003592 ORTHO05D004208 6.6e-13 77.8 94 43.6
RcHm_v2.0_Chr1g0383761 Rosa chinensis HOM05D003592 ORTHO05D004208 6.6e-13 77.8 87 44.8
AT3G03150 Arabidopsis thaliana HOM05D003592 ORTHO05D004208 8.7e-13 77.4 86 48.8
Ah.04g157330 Amaranthus hybridus HOM05D003592 ORTHO05D004208 1.1e-12 77.0 93 46.2
AL6G28210 Arabidopsis lyrata HOM05D003592 ORTHO05D004208 1.5e-12 76.6 124 35.5
TPR.G37953 Trifolium pratense HOM05D003592 ORTHO05D004208 1.5e-12 76.6 86 50.0
arahy.Tifrunner.gnm1.ann1.I6057L Arachis hypogaea HOM05D003592 ORTHO05D004208 1.9e-12 76.3 121 43.0
HanXRQChr09g0257211 Helianthus annuus HOM05D003592 ORTHO05D004208 1.9e-12 76.3 84 48.8
Nn1g02028 Nelumbo nucifera HOM05D003592 ORTHO05D004208 1.9e-12 76.3 86 48.8
CANSAT21G0974 Cannabis sativa HOM05D003592 ORTHO05D004208 2.5e-12 75.9 90 45.6
Cfa015910 Carpinus fangiana HOM05D003592 ORTHO05D004208 2.5e-12 75.9 98 40.8
ClCG07G017260 Citrullus lanatus HOM05D003592 ORTHO05D004208 2.5e-12 75.9 91 46.2
Sp6g27060 Schrenkiella parvula HOM05D003592 ORTHO05D004208 2.5e-12 75.9 123 33.3
CAN.G303.68 Capsicum annuum HOM05D003592 ORTHO05D004208 3.3e-12 75.5 90 46.7
Peaxi162Scf00815g00235 Petunia axillaris HOM05D003592 ORTHO05D004208 3.3e-12 75.5 123 41.5
AL3G12760 Arabidopsis lyrata HOM05D003592 ORTHO05D004208 4.3e-12 75.1 86 47.7
CiPaw.05G236400 Carya illinoinensis HOM05D003592 ORTHO05D004208 4.3e-12 75.1 118 39.8
CsaV3_4G004470 Cucumis sativus L. HOM05D003592 ORTHO05D004208 4.3e-12 75.1 126 40.5
Sed0022386 Sechium edule HOM05D003592 ORTHO05D004208 4.3e-12 75.1 119 41.2
PGSC0003DMG400027031 Solanum tuberosum HOM05D003592 ORTHO05D004208 4.3e-12 75.1 125 41.6
VMungo1215G0435 Vigna mungo HOM05D003592 ORTHO05D004208 4.3e-12 75.1 87 50.6
Duzib128G1398 Durio zibethinus HOM05D003592 ORTHO05D004208 5.6e-12 74.7 89 46.1
Hma1.2p1_0758F.1_g213540 Hydrangea macrophylla HOM05D003592 ORTHO05D004208 5.6e-12 74.7 87 46.0
THA.LOC104827220 Tarenaya hassleriana HOM05D003592 ORTHO05D004208 5.6e-12 74.7 86 44.2
Ah.13g071180 Amaranthus hybridus HOM05D003592 ORTHO05D004208 7.4e-12 74.3 87 47.1
LjContig00222g0008170 Lotus japonicus HOM05D003592 ORTHO05D004208 7.4e-12 74.3 94 47.9
TAR375G0874 Trochodendron aralioides HOM05D003592 ORTHO05D004208 7.4e-12 74.3 79 50.6
BcaB08g36801 Brassica carinata HOM05D003592 ORTHO05D004208 9.6e-12 73.9 86 43.0
BolC9t58839H Brassica oleracea HOM05D003592 ORTHO05D004208 9.6e-12 73.9 86 41.9
Thhalv10017419m.g Eutrema salsugineum HOM05D003592 ORTHO05D004208 9.6e-12 73.9 112 36.6
PSO063G2386 Papaver somniferum HOM05D003592 ORTHO05D004208 9.6e-12 73.9 92 45.7
BcaB04g19374 Brassica carinata HOM05D003592 ORTHO05D004208 1.3e-11 73.6 105 38.1
Nitab4.5_0000115g0310 Nicotiana tabacum HOM05D003592 ORTHO05D004208 1.3e-11 73.6 125 36.0
Psat2g187520 Pisum sativum HOM05D003592 ORTHO05D004208 1.3e-11 73.6 91 47.3
AT5G17165 Arabidopsis thaliana HOM05D003592 ORTHO05D004208 1.6e-11 73.2 86 40.7
BcaC04g18828 Brassica carinata HOM05D003592 ORTHO05D004208 1.6e-11 73.2 86 41.9
Glyma.11G013200 Glycine max HOM05D003592 ORTHO05D004208 1.6e-11 73.2 81 50.6
MD01G1233000 Malus domestica HOM05D003592 ORTHO05D004208 1.6e-11 73.2 87 43.7
Medtr5g008210 Medicago truncatula HOM05D003592 ORTHO05D004208 2.1e-11 72.8 88 45.5
Hund21085 Selenicereus undatus HOM05D003592 ORTHO05D004208 2.1e-11 72.8 91 41.8
A10p22230 Brassica napus HOM05D003592 ORTHO05D004208 3.6e-11 72.0 86 40.7
BraA10t44282Z Brassica rapa HOM05D003592 ORTHO05D004208 3.6e-11 72.0 86 40.7
Carub.0006s1535 Capsella rubella HOM05D003592 ORTHO05D004208 3.6e-11 72.0 86 41.9
Sopen06g029220 Solanum pennellii HOM05D003592 ORTHO05D004208 3.6e-11 72.0 85 49.4
Carub.0003s0230 Capsella rubella HOM05D003592 ORTHO05D004208 4.8e-11 71.6 83 45.8
AUR62028136 Chenopodium quinoa HOM05D003592 ORTHO05D004208 4.8e-11 71.6 77 50.6
Lsat_1_v5_gn_0_9420 Lactuca sativa HOM05D003592 ORTHO05D004208 4.8e-11 71.6 86 43.0
Oeu055446.1 Olea europaea HOM05D003592 ORTHO05D004208 4.8e-11 71.6 85 48.2
Peaxi162Scf00815g00250 Petunia axillaris HOM05D003592 ORTHO05D004208 6.2e-11 71.2 87 41.4
Phvul.002G036900 Phaseolus vulgaris HOM05D003592 ORTHO05D004208 6.2e-11 71.2 87 49.4
unitig_62.g23842 Utricularia gibba HOM05D003592 ORTHO05D004208 6.2e-11 71.2 80 46.2
A03p33220 Brassica napus HOM05D003592 ORTHO05D004208 8.1e-11 70.9 81 44.4
BraA03t12494Z Brassica rapa HOM05D003592 ORTHO05D004208 8.1e-11 70.9 81 44.4
Hund09766 Selenicereus undatus HOM05D003592 ORTHO05D004208 8.1e-11 70.9 85 44.7
Solyc06g072840.3 Solanum lycopersicum HOM05D003592 ORTHO05D004208 8.1e-11 70.9 85 48.2
Glyma.01G230200 Glycine max HOM05D003592 ORTHO05D004208 1.1e-10 70.5 80 47.5
HanXRQChr02g0041191 Helianthus annuus HOM05D003592 ORTHO05D004208 1.1e-10 70.5 97 45.4
QL09p026459 Quercus lobata HOM05D003592 ORTHO05D004208 1.1e-10 70.5 87 42.5
Zm00001eb430170 Zea mays HOM05D003592 ORTHO05D004208 1.1e-10 70.5 91 44.0
BcaC01g04411 Brassica carinata HOM05D003592 ORTHO05D004208 1.4e-10 70.1 81 45.7
A05p44040 Brassica napus HOM05D003592 ORTHO05D004208 1.4e-10 70.1 82 47.6
C03p40480 Brassica napus HOM05D003592 ORTHO05D004208 1.4e-10 70.1 81 45.7
BolC3t16311H Brassica oleracea HOM05D003592 ORTHO05D004208 1.4e-10 70.1 81 45.7
BraSC90t46707Z Brassica rapa HOM05D003592 ORTHO05D004208 1.4e-10 70.1 82 47.6
ECA232G0247 Erigeron canadensis HOM05D003592 ORTHO05D004208 1.4e-10 70.1 84 46.4
Nitab4.5_0006270g0010 Nicotiana tabacum HOM05D003592 ORTHO05D004208 1.4e-10 70.1 89 46.1
Sopen06g029230 Solanum pennellii HOM05D003592 ORTHO05D004208 1.4e-10 70.1 125 40.8
Nitab4.5_0000115g0330 Nicotiana tabacum HOM05D003592 ORTHO05D004208 2.4e-10 69.3 115 40.9
Os04g0598000 Oryza sativa ssp. japonica HOM05D003592 ORTHO05D004208 2.4e-10 69.3 89 44.9
Sp3g02190 Schrenkiella parvula HOM05D003592 ORTHO05D004208 2.4e-10 69.3 82 47.6
BcaC05g30524 Brassica carinata HOM05D003592 ORTHO05D004208 3.1e-10 68.9 81 45.7
C05p63660 Brassica napus HOM05D003592 ORTHO05D004208 3.1e-10 68.9 81 45.7
BolC5t35035H Brassica oleracea HOM05D003592 ORTHO05D004208 3.1e-10 68.9 81 45.7
Eucgr.K00100 Eucalyptus grandis HOM05D003592 ORTHO05D004208 3.1e-10 68.9 80 45.0
Aa31LG5G13630 Aethionema arabicum HOM05D003592 ORTHO05D004208 4.0e-10 68.6 82 45.1
CARHR077170 Cardamine hirsuta HOM05D003592 ORTHO05D004208 4.0e-10 68.6 116 35.3
Solyc06g072845.1 Solanum lycopersicum HOM05D003592 ORTHO05D004208 4.0e-10 68.6 125 40.0
Peaxi162Scf00133g00111 Petunia axillaris HOM05D003592 ORTHO05D004208 6.9e-10 67.8 124 38.7
Sed0007086 Sechium edule HOM05D003592 ORTHO05D004208 6.9e-10 67.8 117 39.3
Nitab4.5_0003012g0010 Nicotiana tabacum HOM05D003592 ORTHO05D004208 9.0e-10 67.4 117 38.5
C09p60040 Brassica napus HOM05D003592 ORTHO05D004208 1.5e-09 66.6 74 40.5
Thhalv10021768m.g Eutrema salsugineum HOM05D003592 ORTHO05D004208 1.5e-09 66.6 85 41.2
CDE11G0498 Ceratophyllum demersum HOM05D003592 ORTHO05D004208 2.0e-09 66.2 86 46.5
CiPaw.06G020500 Carya illinoinensis HOM05D003592 ORTHO05D004208 5.8e-09 64.7 88 44.3
PGR142G3032 Punica granatum HOM05D003592 ORTHO05D004208 1.3e-08 63.5 79 45.6
PSO170G2965 Papaver somniferum HOM05D003592 ORTHO05D004208 2.9e-08 62.4 91 40.7
HPP92_014744 Vanilla planifolia HOM05D003592 ORTHO05D004208 4.9e-08 61.6 88 43.2
CDE02G0247 Ceratophyllum demersum HOM05D003592 ORTHO05D004208 1.1e-07 60.5 87 43.7
Lsat_1_v5_gn_0_9440 Lactuca sativa HOM05D003592 ORTHO05D029303 1.4e-07 60.1 120 35.8
ClCG01G004940 Citrullus lanatus HOM05D003592 ORTHO05D004208 9.3e-07 57.4 82 42.7
Sed0014997 Sechium edule HOM05D003592 ORTHO05D004208 1.2e-06 57.0 85 40.0
Ah.13g071140 Amaranthus hybridus HOM05D003592 ORTHO05D004208 2.7e-06 55.8 85 36.5
HanXRQChr05g0137871 Helianthus annuus HOM05D003592 ORTHO05D029303 2.7e-06 55.8 89 38.2
MELO3C005442.2 Cucumis melo HOM05D003592 ORTHO05D004208 4.6e-06 55.1 90 44.4
Sed0022343 Sechium edule HOM05D003592 ORTHO05D004208 7.9e-06 54.3 71 45.1


User provided reference genes

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