Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_37206 Sequoiadendron giganteum HOM05D007586 ORTHO05D009554 2.7e-32 141.4 69 100.0
Nn4g26123 Nelumbo nucifera HOM05D007586 ORTHO05D009554 1.0e-15 86.3 57 59.6
Sp6g25470 Schrenkiella parvula HOM05D007586 ORTHO05D009554 1.0e-15 86.3 64 54.7
Thhalv10015193m.g Eutrema salsugineum HOM05D007586 ORTHO05D009554 1.7e-15 85.5 59 57.6
BcaB01g04886 Brassica carinata HOM05D007586 ORTHO05D009554 3.9e-15 84.3 59 57.6
Ah.04g150810 Amaranthus hybridus HOM05D007586 ORTHO05D009554 5.1e-15 84.0 53 64.2
Prupe.1G146700 Prunus persica HOM05D007586 ORTHO05D009554 5.1e-15 84.0 57 61.4
BraA10t44138Z Brassica rapa HOM05D007586 ORTHO05D009554 8.7e-15 83.2 57 56.1
ATR0626G363 Amborella trichopoda HOM05D007586 ORTHO05D009554 1.1e-14 82.8 65 55.4
Actinidia00073 Actinidia chinensis HOM05D007586 ORTHO05D009554 1.9e-14 82.0 55 60.0
BcaB01g05279 Brassica carinata HOM05D007586 ORTHO05D009554 1.9e-14 82.0 56 57.1
C03p10700 Brassica napus HOM05D007586 ORTHO05D009554 1.9e-14 82.0 56 57.1
Cpa.g.sc16.72 Carica papaya HOM05D007586 ORTHO05D009554 1.9e-14 82.0 59 55.9
A03p09170 Brassica napus HOM05D007586 ORTHO05D009554 4.3e-14 80.9 56 57.1
BraA03t10240Z Brassica rapa HOM05D007586 ORTHO05D009554 4.3e-14 80.9 56 57.1
PSO832G2949 Papaver somniferum HOM05D007586 ORTHO05D009554 4.3e-14 80.9 54 63.0
MBI19_g21636_MAGBIO Magnolia biondii HOM05D007586 ORTHO05D009554 5.6e-14 80.5 53 60.4
EL10Ac3g07262 Beta vulgaris HOM05D007586 ORTHO05D009554 7.3e-14 80.1 55 58.2
Hma1.2p1_2025F.1_g311520 Hydrangea macrophylla HOM05D007586 ORTHO05D009554 7.3e-14 80.1 63 52.4
PSO210G0926 Papaver somniferum HOM05D007586 ORTHO05D009554 1.3e-13 79.3 69 55.1
Haze_01009 Corylus avellana HOM05D007586 ORTHO05D009554 2.8e-13 78.2 56 55.4
Sed0005131 Sechium edule HOM05D007586 ORTHO05D009554 3.6e-13 77.8 56 57.1
vmacro15289 Vaccinium macrocarpon HOM05D007586 ORTHO05D009554 3.6e-13 77.8 64 51.6
Potri.010G028000 Populus trichocarpa HOM05D007586 ORTHO05D009554 4.8e-13 77.4 54 55.6
arahy.Tifrunner.gnm1.ann1.5VHG73 Arachis hypogaea HOM05D007586 ORTHO05D009554 6.2e-13 77.0 61 49.2
THA.LOC104802735 Tarenaya hassleriana HOM05D007586 ORTHO05D009554 6.2e-13 77.0 55 54.5
arahy.Tifrunner.gnm1.ann1.SH255N Arachis hypogaea HOM05D007586 ORTHO05D009554 8.1e-13 76.6 61 47.5
CARHR194100 Cardamine hirsuta HOM05D007586 ORTHO05D009554 8.1e-13 76.6 60 51.7
CiPaw.02G089500 Carya illinoinensis HOM05D007586 ORTHO05D009554 8.1e-13 76.6 64 50.0
CsaV3_6G005530 Cucumis sativus L. HOM05D007586 ORTHO05D009554 8.1e-13 76.6 57 54.4
ClCG06G005620 Citrullus lanatus HOM05D007586 ORTHO05D009554 1.1e-12 76.3 57 54.4
COL.COLO4_13963 Corchorus olitorius HOM05D007586 ORTHO05D009554 1.4e-12 75.9 54 55.6
Sabra08G0162000 Salix brachista HOM05D007586 ORTHO05D009554 1.4e-12 75.9 57 50.9
Manes.03G188100 Manihot esculenta HOM05D007586 ORTHO05D009554 1.8e-12 75.5 56 53.6
Cfa015540 Carpinus fangiana HOM05D007586 ORTHO05D009554 2.4e-12 75.1 56 53.6
Cc03_g02750 Coffea canephora HOM05D007586 ORTHO05D009554 2.4e-12 75.1 53 54.7
MD13G1177700 Malus domestica HOM05D007586 ORTHO05D009554 2.4e-12 75.1 56 57.1
Potri.008G198500 Populus trichocarpa HOM05D007586 ORTHO05D009554 2.4e-12 75.1 54 51.9
CSS0032912 Camellia sinensis var. sinensis HOM05D007586 ORTHO05D009554 3.1e-12 74.7 54 55.6
Dinv38351 Davidia involucrata HOM05D007586 ORTHO05D009554 3.1e-12 74.7 54 53.7
Duzib151G0133 Durio zibethinus HOM05D007586 ORTHO05D009554 3.1e-12 74.7 53 54.7
QL06p006198 Quercus lobata HOM05D007586 ORTHO05D009554 3.1e-12 74.7 64 46.9
Atru.chr4.2702 Acer truncatum HOM05D007586 ORTHO05D009554 4.0e-12 74.3 63 47.6
COL.COLO4_25734 Corchorus olitorius HOM05D007586 ORTHO05D009554 4.0e-12 74.3 48 60.4
Gohir.D10G162600 Gossypium hirsutum HOM05D007586 ORTHO05D009554 4.0e-12 74.3 53 52.8
Gorai.011G181700 Gossypium raimondii HOM05D007586 ORTHO05D009554 4.0e-12 74.3 53 52.8
RcHm_v2.0_Chr4g0420101 Rosa chinensis HOM05D007586 ORTHO05D009554 4.0e-12 74.3 50 58.0
GSVIVG01017851001 Vitis vinifera HOM05D007586 ORTHO05D009554 4.0e-12 74.3 53 56.6
DCAR_027132 Daucus carota HOM05D007586 ORTHO05D009554 5.3e-12 73.9 56 46.4
FvH4_4g16650 Fragaria vesca HOM05D007586 ORTHO05D009554 5.3e-12 73.9 50 58.0
FAN12G0362 Fragaria x ananassa HOM05D007586 ORTHO05D009554 5.3e-12 73.9 50 58.0
TAR636G1069 Trochodendron aralioides HOM05D007586 ORTHO05D009554 5.3e-12 73.9 45 64.4
SalBow2G2177 Salvia bowleyana HOM05D007586 ORTHO05D009554 6.9e-12 73.6 64 50.0
Sopen01g032230 Solanum pennellii HOM05D007586 ORTHO05D009554 6.9e-12 73.6 56 50.0
Thecc.04G272400 Theobroma cacao HOM05D007586 ORTHO05D009554 9.0e-12 73.2 53 54.7
Zm00001eb349880 Zea mays HOM05D007586 ORTHO05D009554 9.0e-12 73.2 60 48.3
Gohir.A10G105800 Gossypium hirsutum HOM05D007586 ORTHO05D009554 1.2e-11 72.8 53 52.8
unitig_749.g14058 Utricularia gibba HOM05D007586 ORTHO05D009554 1.5e-11 72.4 53 54.7
Lalb_Chr18g0055891 Lupinus albus HOM05D007586 ORTHO05D009554 2.0e-11 72.0 56 48.2
ECA246G1660 Erigeron canadensis HOM05D007586 ORTHO05D009554 2.6e-11 71.6 53 52.8
Migut.G00284 Erythranthe guttata HOM05D007586 ORTHO05D009554 3.4e-11 71.2 51 54.9
Medtr2g020920 Medicago truncatula HOM05D007586 ORTHO05D009554 3.4e-11 71.2 56 46.4
BcaB08g36636 Brassica carinata HOM05D007586 ORTHO05D009554 4.5e-11 70.9 67 49.3
Lj6g0006659 Lotus japonicus HOM05D007586 ORTHO05D009554 4.5e-11 70.9 58 48.3
Pp3c2_37920 Physcomitrium patens HOM05D007586 ORTHO05D009554 4.5e-11 70.9 63 54.0
AUR62018376 Chenopodium quinoa HOM05D000949 ORTHO05D001276 5.8e-11 70.5 60 53.3
Phvul.006G158200 Phaseolus vulgaris HOM05D007586 ORTHO05D009554 5.8e-11 70.5 65 52.3
AL6G30270 Arabidopsis lyrata HOM05D007586 ORTHO05D009554 7.6e-11 70.1 44 63.6
AT5G18920 Arabidopsis thaliana HOM05D007586 ORTHO05D009554 7.6e-11 70.1 44 63.6
CANSAT01G2672 Cannabis sativa HOM05D007586 ORTHO05D009554 7.6e-11 70.1 48 56.2
Carub.0006s1722 Capsella rubella HOM05D007586 ORTHO05D009554 7.6e-11 70.1 44 63.6
Glyma.15G100600 Glycine max HOM05D007586 ORTHO05D009554 7.6e-11 70.1 68 50.0
Psat1g185520 Pisum sativum HOM05D007586 ORTHO05D009554 7.6e-11 70.1 64 42.2
Os05g0404300 Oryza sativa ssp. japonica HOM05D007586 ORTHO05D009554 1.3e-10 69.3 46 63.0
Phvul.006G158400 Phaseolus vulgaris HOM05D007586 ORTHO05D009554 2.9e-10 68.2 61 45.9
TWI09G0380 Tripterygium wilfordii HOM05D007586 ORTHO05D009554 2.9e-10 68.2 82 43.9
TPR.G18017 Trifolium pratense HOM05D007586 ORTHO05D009554 3.8e-10 67.8 55 45.5
Ciclev10006319m.g Citrus clementina HOM05D007586 ORTHO05D009554 8.4e-10 66.6 53 49.1
Aa31LG11G10810 Aethionema arabicum HOM05D007586 ORTHO05D009554 1.1e-09 66.2 43 58.1
arahy.Tifrunner.gnm1.ann1.70FWSL Arachis hypogaea HOM05D007586 ORTHO05D009554 1.1e-09 66.2 69 42.0
PGR031G0345 Punica granatum HOM05D007586 ORTHO05D009554 1.4e-09 65.9 44 59.1
Glyma.13G212100 Glycine max HOM05D007586 ORTHO05D009554 2.4e-09 65.1 64 43.8
Hma1.2p1_0511F.1_g169220 Hydrangea macrophylla HOM05D000488 ORTHO05D000347 2.4e-09 65.1 50 54.0
BolC3t13546H Brassica oleracea HOM05D007586 ORTHO05D009554 5.4e-09 63.9 42 57.1
Lj3g0017006 Lotus japonicus HOM05D007586 ORTHO05D009554 3.5e-08 61.2 53 49.1
A10p20750 Brassica napus HOM05D007586 ORTHO05D009554 4.6e-08 60.8 42 54.8
Nitab4.5_0000201g0230 Nicotiana tabacum HOM05D007586 ORTHO05D009554 2.3e-07 58.5 46 47.8
FAN22G2185 Fragaria x ananassa HOM05D007586 ORTHO05D009554 6.7e-07 57.0 55 49.1
Nitab4.5_0009518g0010 Nicotiana tabacum HOM05D007586 ORTHO05D009554 6.7e-07 57.0 43 48.8
Ca_00589_v3 Cicer arietinum L. HOM05D002494 ORTHO05D002673 7.4e-06 53.5 37 54.1
Eucgr.B01188 Eucalyptus grandis HOM05D007586 ORTHO05D009554 9.6e-06 53.1 31 67.7
Medtr2g020940 Medicago truncatula HOM05D007586 ORTHO05D009554 9.6e-06 53.1 57 40.4


User provided reference genes

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