Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_37108 Sequoiadendron giganteum HOM05D005589 ORTHO05D006948 1.5e-164 582.8 300 100.0
MBI05_g07866_MAGBIO Magnolia biondii HOM05D005589 ORTHO05D006948 5.9e-108 394.8 275 69.8
TAR623G1588 Trochodendron aralioides HOM05D005589 ORTHO05D006948 1.2e-105 387.1 275 68.0
MD03G1103200 Malus domestica HOM05D005589 ORTHO05D006948 1.1e-103 380.6 275 67.3
PSO339G3114 Papaver somniferum HOM05D005589 ORTHO05D006948 1.3e-102 377.1 275 66.5
PSO384G0870 Papaver somniferum HOM05D005589 ORTHO05D006948 1.3e-102 377.1 275 66.5
MD11G1116800 Malus domestica HOM05D005589 ORTHO05D006948 2.2e-102 376.3 275 66.2
Prupe.6G087200 Prunus persica HOM05D005589 ORTHO05D006948 3.7e-102 375.6 275 65.5
CSS0045601 Camellia sinensis var. sinensis HOM05D005589 ORTHO05D006948 1.1e-101 374.0 275 66.5
FAN25G3171 Fragaria x ananassa HOM05D005589 ORTHO05D006948 2.4e-101 372.9 275 65.5
Gohir.D05G098801 Gossypium hirsutum HOM05D005589 ORTHO05D006948 3.1e-101 372.5 275 65.5
Dinv26284 Davidia involucrata HOM05D005589 ORTHO05D006948 4.1e-101 372.1 275 65.5
FAN11G1618 Fragaria x ananassa HOM05D005589 ORTHO05D006948 5.3e-101 371.7 275 65.1
FAN16G1588 Fragaria x ananassa HOM05D005589 ORTHO05D006948 5.3e-101 371.7 275 64.7
RcHm_v2.0_Chr5g0062341 Rosa chinensis HOM05D005589 ORTHO05D006948 5.3e-101 371.7 275 65.5
Gorai.009G102500 Gossypium raimondii HOM05D005589 ORTHO05D006948 9.0e-101 370.9 275 65.1
Aqoxy2G01955 Aquilegia oxysepala HOM05D005589 ORTHO05D006948 1.2e-100 370.5 275 65.1
FvH4_3g34630 Fragaria vesca HOM05D005589 ORTHO05D006948 1.2e-100 370.5 275 64.7
Gohir.A05G098800 Gossypium hirsutum HOM05D005589 ORTHO05D006948 1.5e-100 370.2 275 65.1
Os05g0117600 Oryza sativa ssp. japonica HOM05D005589 ORTHO05D006948 2.0e-100 369.8 275 64.4
GSVIVG01025056001 Vitis vinifera HOM05D005589 ORTHO05D006948 2.0e-100 369.8 275 65.8
Phvul.011G069300 Phaseolus vulgaris HOM05D005589 ORTHO05D006948 3.4e-100 369.0 275 66.5
Atru.chr3.3796 Acer truncatum HOM05D005589 ORTHO05D006948 4.5e-100 368.6 275 64.7
Cc01_g12110 Coffea canephora HOM05D005589 ORTHO05D006948 1.7e-99 366.7 275 65.1
Thecc.09G329900 Theobroma cacao HOM05D005589 ORTHO05D006948 1.7e-99 366.7 275 64.7
Ca_19212_v3 Cicer arietinum L. HOM05D005589 ORTHO05D006948 3.8e-99 365.5 275 64.4
FAN21G0436 Fragaria x ananassa HOM05D005589 ORTHO05D006948 3.8e-99 365.5 275 64.4
Glyma.12G074800 Glycine max HOM05D005589 ORTHO05D006948 6.5e-99 364.8 275 65.1
Ciclev10027829m.g Citrus clementina HOM05D005589 ORTHO05D006948 8.5e-99 364.4 275 64.4
Lj1A176T55 Lonicera japonica HOM05D005589 ORTHO05D006948 1.1e-98 364.0 275 64.4
VMungo1127G2244 Vigna mungo HOM05D005589 ORTHO05D006948 1.1e-98 364.0 275 66.2
Haze_24005 Corylus avellana HOM05D005589 ORTHO05D006948 2.5e-98 362.8 275 65.8
Rhsim13G0088500 Rhododendron simsii HOM05D005589 ORTHO05D006948 2.5e-98 362.8 275 64.0
Lalb_Chr19g0137591 Lupinus albus HOM05D005589 ORTHO05D006948 3.2e-98 362.5 275 64.0
COL.COLO4_18425 Corchorus olitorius HOM05D005589 ORTHO05D006948 4.2e-98 362.1 275 64.0
Psat7g220760 Pisum sativum HOM05D005589 ORTHO05D006948 5.5e-98 361.7 275 63.3
PGR119G2409 Punica granatum HOM05D005589 ORTHO05D006948 9.4e-98 360.9 275 64.0
ATR0759G074 Amborella trichopoda HOM05D005589 ORTHO05D006948 1.2e-97 360.5 275 64.7
Duzib168G1570 Durio zibethinus HOM05D005589 ORTHO05D006948 1.2e-97 360.5 275 64.0
Hma1.2p1_0846F.1_g227810 Hydrangea macrophylla HOM05D005589 ORTHO05D006948 1.2e-97 360.5 260 66.9
Ah.08g215000 Amaranthus hybridus HOM05D005589 ORTHO05D006948 1.6e-97 360.1 275 63.6
TWI31G1338 Tripterygium wilfordii HOM05D005589 ORTHO05D006948 1.6e-97 360.1 275 63.3
Zm00001eb266020 Zea mays HOM05D005589 ORTHO05D006948 2.1e-97 359.8 275 62.5
Cfa011427 Carpinus fangiana HOM05D005589 ORTHO05D006948 4.6e-97 358.6 275 64.7
AUR62001854 Chenopodium quinoa HOM05D005589 ORTHO05D006948 1.0e-96 357.5 275 63.3
AUR62009648 Chenopodium quinoa HOM05D005589 ORTHO05D006948 1.0e-96 357.5 275 63.3
Eucgr.J02099 Eucalyptus grandis HOM05D005589 ORTHO05D006948 1.8e-96 356.7 275 63.3
EL10Ac7g15939 Beta vulgaris HOM05D005589 ORTHO05D006948 2.3e-96 356.3 275 62.5
CiPaw.13G101800 Carya illinoinensis HOM05D005589 ORTHO05D006948 3.0e-96 355.9 275 63.6
DCAR_015589 Daucus carota HOM05D005589 ORTHO05D006948 3.0e-96 355.9 275 62.2
CANSAT54G1803 Cannabis sativa HOM05D005589 ORTHO05D006948 6.7e-96 354.8 275 64.0
Migut.D02148 Erythranthe guttata HOM05D005589 ORTHO05D006948 1.1e-95 354.0 275 63.3
HanXRQChr08g0228221 Helianthus annuus HOM05D005589 ORTHO05D006948 1.5e-95 353.6 275 60.7
HPP92_025619 Vanilla planifolia HOM05D005589 ORTHO05D006948 1.5e-95 353.6 275 61.1
Lsat_1_v5_gn_9_21601 Lactuca sativa HOM05D005589 ORTHO05D006948 2.0e-95 353.2 275 61.5
Potri.001G234300 Populus trichocarpa HOM05D005589 ORTHO05D006948 2.5e-95 352.8 276 63.8
Peaxi162Scf00411g00711 Petunia axillaris HOM05D005589 ORTHO05D006948 3.3e-95 352.4 275 61.1
Lj3g0027543 Lotus japonicus HOM05D005589 ORTHO05D006948 5.7e-95 351.7 275 61.8
Sabra16G0140600 Salix brachista HOM05D005589 ORTHO05D006948 3.7e-94 349.0 276 62.7
MSTRG.21170 Avicennia marina HOM05D005589 ORTHO05D006948 6.3e-94 348.2 275 61.5
ECA247G1976 Erigeron canadensis HOM05D005589 ORTHO05D006948 6.3e-94 348.2 275 61.1
Nitab4.5_0007030g0040 Nicotiana tabacum HOM05D005589 ORTHO05D006948 6.3e-94 348.2 275 59.6
Oeu040274.2 Olea europaea HOM05D005589 ORTHO05D006948 1.1e-93 347.4 275 61.5
SalBow3G3271 Salvia bowleyana HOM05D005589 ORTHO05D006948 1.4e-93 347.1 275 61.8
Nitab4.5_0002684g0170 Nicotiana tabacum HOM05D005589 ORTHO05D006948 1.8e-93 346.7 275 59.6
CAN.G755.19 Capsicum annuum HOM05D005589 ORTHO05D006948 2.4e-93 346.3 275 60.4
SGA_v2.0_scaffold394G50722 Striga asiatica HOM05D005589 ORTHO05D006948 3.1e-93 345.9 275 62.5
Hund05020 Selenicereus undatus HOM05D005589 ORTHO05D006948 4.1e-93 345.5 275 62.2
TPR.G2986 Trifolium pratense HOM05D005589 ORTHO05D006948 5.3e-93 345.1 280 61.1
Solyc11g072950.3 Solanum lycopersicum HOM05D005589 ORTHO05D006948 1.2e-92 344.0 275 59.6
THA.LOC104799457 Tarenaya hassleriana HOM05D005589 ORTHO05D006948 2.0e-92 343.2 275 59.3
CsaV3_1G033840 Cucumis sativus L. HOM05D005589 ORTHO05D006948 2.6e-92 342.8 275 60.4
MELO3C020678.2 Cucumis melo HOM05D005589 ORTHO05D006948 3.4e-92 342.4 275 60.4
Sc21g0005390 Simmondsia chinensis HOM05D005589 ORTHO05D006948 3.4e-92 342.4 275 61.5
ClCG03G001750 Citrullus lanatus HOM05D005589 ORTHO05D006948 4.5e-92 342.0 275 60.0
CSS0023618 Camellia sinensis var. sinensis HOM05D005589 ORTHO05D006948 7.7e-92 341.3 275 62.2
Manes.04G029200 Manihot esculenta HOM05D005589 ORTHO05D006948 7.7e-92 341.3 262 62.2
Sopen11g030610 Solanum pennellii HOM05D005589 ORTHO05D006948 1.0e-91 340.9 275 58.9
PGSC0003DMG400015549 Solanum tuberosum HOM05D005589 ORTHO05D006948 2.9e-91 339.3 275 59.3
arahy.Tifrunner.gnm1.ann1.3ELA68 Arachis hypogaea HOM05D005589 ORTHO05D006948 5.0e-91 338.6 315 55.6
A06p20980 Brassica napus HOM05D005589 ORTHO05D006948 8.5e-91 337.8 275 59.6
Thhalv10002404m.g Eutrema salsugineum HOM05D005589 ORTHO05D006948 2.5e-90 336.3 275 58.9
Sp5g15410 Schrenkiella parvula HOM05D005589 ORTHO05D006948 4.2e-90 335.5 275 58.5
C03p70540 Brassica napus HOM05D005589 ORTHO05D006948 5.5e-90 335.1 275 58.9
Sed0009383 Sechium edule HOM05D005589 ORTHO05D006948 7.2e-90 334.7 275 58.5
SMO196G0111 Selaginella moellendorffii HOM05D005589 ORTHO05D006948 1.2e-89 334.0 275 59.6
CARHR154660 Cardamine hirsuta HOM05D005589 ORTHO05D006948 2.7e-89 332.8 275 58.2
Aa31LG4G15320 Aethionema arabicum HOM05D005589 ORTHO05D006948 4.7e-89 332.0 275 58.2
Carub.0005s1206 Capsella rubella HOM05D005589 ORTHO05D006948 1.8e-88 330.1 275 57.8
BraA06t25186Z Brassica rapa HOM05D005589 ORTHO05D006948 6.7e-88 328.2 289 56.7
AT3G46220 Arabidopsis thaliana HOM05D005589 ORTHO05D006948 8.8e-88 327.8 275 57.5
AL5G25010 Arabidopsis lyrata HOM05D005589 ORTHO05D006948 1.1e-87 327.4 275 57.1
BolC3t19334H Brassica oleracea HOM05D005589 ORTHO05D006948 9.7e-87 324.3 289 55.7
vmacro03127 Vaccinium macrocarpon HOM05D005589 ORTHO05D006948 6.3e-86 321.6 242 64.5
AagrBONN_evm.TU.Sc2ySwM_228.2492 Anthoceros agrestis HOM05D005589 ORTHO05D006948 3.5e-84 315.8 276 54.3
Pp3c8_20630 Physcomitrium patens HOM05D005589 ORTHO05D006948 7.2e-82 308.1 276 57.2
Medtr4g062090 Medicago truncatula HOM05D005589 ORTHO05D006948 1.2e-81 307.4 278 57.6
Actinidia37259 Actinidia chinensis HOM05D005589 ORTHO05D006948 2.3e-80 303.1 221 65.6
CBR_g29437 Chara braunii HOM05D005589 ORTHO05D006948 3.5e-76 289.3 298 49.0
CBR_g777 Chara braunii HOM05D005589 ORTHO05D006948 3.0e-72 276.2 298 47.7
CDE02G1253 Ceratophyllum demersum HOM05D005589 ORTHO05D006948 3.0e-64 249.6 204 59.8
unitig_37.g12679 Utricularia gibba HOM05D005589 ORTHO05D006948 1.2e-63 247.7 275 48.4
Thhalv10002414m.g Eutrema salsugineum HOM05D005589 ORTHO05D006948 3.7e-62 242.7 218 55.5
Glyma.11G145645 Glycine max HOM05D005589 ORTHO05D006948 4.9e-62 242.3 173 67.1
AL1G56500 Arabidopsis lyrata HOM05D005589 ORTHO05D006948 1.1e-50 204.5 275 44.0
Mapoly0007s0143 Marchantia polymorpha HOM05D005589 ORTHO05D006948 8.9e-48 194.9 275 41.8
Cre16.g686650 Chlamydomonas reinhardtii HOM05D005589 ORTHO05D006948 1.5e-47 194.1 279 34.8
Cpa.g.sc252.12 Carica papaya HOM05D005589 ORTHO05D006948 7.5e-47 191.8 141 66.0
Actinidia07078 Actinidia chinensis HOM05D005589 ORTHO05D006948 4.9e-38 162.5 100 72.0
arahy.Tifrunner.gnm1.ann1.0DF5JX Arachis hypogaea HOM05D005589 ORTHO05D006948 3.9e-35 152.9 108 66.7
arahy.Tifrunner.gnm1.ann1.KKDX05 Arachis hypogaea HOM05D001394 ORTHO05D001237 8.1e-25 118.6 95 60.0
Gohir.D08G115100 Gossypium hirsutum HOM05D005589 ORTHO05D047064 4.2e-21 106.3 68 72.1
Gorai.004G124000 Gossypium raimondii HOM05D005589 ORTHO05D047064 4.2e-21 106.3 68 72.1
CSS0011793 Camellia sinensis var. sinensis HOM05D005589 ORTHO05D006948 2.1e-20 104.0 111 48.6
arahy.Tifrunner.gnm1.ann1.HF8MSC Arachis hypogaea HOM05D005589 ORTHO05D006948 5.1e-19 99.4 113 46.0
PRCOL_00006228 Prasinoderma coloniale HOM05D005589 ORTHO05D006948 1.5e-15 87.8 296 21.6
arahy.Tifrunner.gnm1.ann1.NIGF9J Arachis hypogaea HOM05D001394 ORTHO05D001237 1.3e-14 84.7 71 56.3
BcaC01g01924 Brassica carinata HOM05D005589 ORTHO05D006948 6.2e-09 65.9 49 57.1
arahy.Tifrunner.gnm1.ann1.LY30IG Arachis hypogaea HOM05D005589 ORTHO05D006948 9.0e-08 62.0 71 46.5


User provided reference genes

Program Settings