Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_36942 Sequoiadendron giganteum HOM05D004225 ORTHO05D000239 1.9e-81 305.8 162 100.0
SEGI_41481 Sequoiadendron giganteum HOM05D004225 ORTHO05D004728 4.2e-28 128.6 74 83.8
SEGI_07204 Sequoiadendron giganteum HOM05D000089 ORTHO05D000104 5.5e-20 101.7 74 82.4
Gorai.007G259700 Gossypium raimondii HOM05D004225 ORTHO05D004728 1.1e-12 77.4 53 69.8
Peaxi162Scf00061g00247 Petunia axillaris HOM05D004225 ORTHO05D004728 1.5e-12 77.0 59 59.3
MBI11_g07706_MAGBIO Magnolia biondii HOM05D004225 ORTHO05D004728 1.9e-12 76.6 51 74.5
Mapoly0082s0025 Marchantia polymorpha HOM05D004225 ORTHO05D004728 1.9e-12 76.6 50 74.0
Nitab4.5_0001355g0010 Nicotiana tabacum HOM05D004225 ORTHO05D004728 1.9e-12 76.6 59 59.3
Nitab4.5_0010528g0010 Nicotiana tabacum HOM05D004225 ORTHO05D004728 1.9e-12 76.6 59 59.3
Gohir.D11G244200 Gossypium hirsutum HOM05D004225 ORTHO05D004728 2.5e-12 76.3 53 67.9
Sopen01g020500 Solanum pennellii HOM05D004225 ORTHO05D004728 2.5e-12 76.3 59 61.0
Gohir.A11G233000 Gossypium hirsutum HOM05D004225 ORTHO05D004728 3.2e-12 75.9 52 69.2
COL.COLO4_32974 Corchorus olitorius HOM05D004225 ORTHO05D004728 4.2e-12 75.5 53 67.9
Duzib128G0769 Durio zibethinus HOM05D004225 ORTHO05D004728 5.5e-12 75.1 59 61.0
Gohir.A13G165100 Gossypium hirsutum HOM05D004225 ORTHO05D004728 5.5e-12 75.1 53 66.0
Sed0003216 Sechium edule HOM05D004225 ORTHO05D004728 7.2e-12 74.7 51 68.6
Solyc01g056570.3 Solanum lycopersicum HOM05D004225 ORTHO05D004728 7.2e-12 74.7 59 61.0
ATR0697G085 Amborella trichopoda HOM05D004225 ORTHO05D004728 9.5e-12 74.3 50 72.0
Duzib177G1146 Durio zibethinus HOM05D004225 ORTHO05D004728 9.5e-12 74.3 59 62.7
PSO339G3394 Papaver somniferum HOM05D004225 ORTHO05D004728 9.5e-12 74.3 51 68.6
Hund10817 Selenicereus undatus HOM05D004225 ORTHO05D004728 9.5e-12 74.3 51 64.7
Cfa017675 Carpinus fangiana HOM05D004225 ORTHO05D004728 1.2e-11 73.9 50 68.0
CiPaw.10G126100 Carya illinoinensis HOM05D004225 ORTHO05D004728 1.2e-11 73.9 51 68.6
Haze_20474 Corylus avellana HOM05D004225 ORTHO05D004728 1.2e-11 73.9 50 68.0
Lj1g0011347 Lotus japonicus HOM05D004225 ORTHO05D004728 1.2e-11 73.9 56 60.7
Psat3g087720 Pisum sativum HOM05D004225 ORTHO05D004728 1.2e-11 73.9 52 67.3
Psat3g087760 Pisum sativum HOM05D004225 ORTHO05D004728 1.2e-11 73.9 52 67.3
A05p43600 Brassica napus HOM05D004225 ORTHO05D004728 1.6e-11 73.6 60 63.3
Ca_08286_v3 Cicer arietinum L. HOM05D004225 ORTHO05D004728 1.6e-11 73.6 52 65.4
Gohir.D13G168000 Gossypium hirsutum HOM05D004225 ORTHO05D004728 1.6e-11 73.6 53 64.2
THA.LOC104820785 Tarenaya hassleriana HOM05D004225 ORTHO05D004728 1.6e-11 73.6 51 68.6
MD12G1006900 Malus domestica HOM05D004225 ORTHO05D004728 2.1e-11 73.2 56 58.9
Pp3c8_24330 Physcomitrium patens HOM05D004225 ORTHO05D004728 2.1e-11 73.2 55 58.2
Sp3g02770 Schrenkiella parvula HOM05D004225 ORTHO05D004728 2.1e-11 73.2 56 62.5
Thecc.05G246800 Theobroma cacao HOM05D004225 ORTHO05D004728 2.1e-11 73.2 57 61.4
Eucgr.A02119 Eucalyptus grandis HOM05D004225 ORTHO05D004728 2.7e-11 72.8 51 64.7
Medtr7g086050 Medicago truncatula HOM05D004225 ORTHO05D004728 2.7e-11 72.8 52 63.5
QL07p018789 Quercus lobata HOM05D004225 ORTHO05D004728 2.7e-11 72.8 51 68.6
SGA_v2.0_scaffold112G31648 Striga asiatica HOM05D004225 ORTHO05D004728 2.7e-11 72.8 56 64.3
HPP92_028052 Vanilla planifolia HOM05D004225 ORTHO05D004728 2.7e-11 72.8 64 56.2
Actinidia37791 Actinidia chinensis HOM05D004225 ORTHO05D004728 3.6e-11 72.4 50 70.0
Aa31LG5G14340 Aethionema arabicum HOM05D004225 ORTHO05D004728 3.6e-11 72.4 51 66.7
Ciclev10018636m.g Citrus clementina HOM05D004225 ORTHO05D004728 3.6e-11 72.4 51 66.7
Gorai.013G194200 Gossypium raimondii HOM05D004225 ORTHO05D004728 3.6e-11 72.4 61 54.1
MD14G1004600 Malus domestica HOM05D004225 ORTHO05D004728 3.6e-11 72.4 56 58.9
AagrBONN_evm.TU.Sc2ySwM_228.1834 Anthoceros agrestis HOM05D004225 ORTHO05D004728 4.7e-11 72.0 50 64.0
CARHR077860 Cardamine hirsuta HOM05D004225 ORTHO05D004728 4.7e-11 72.0 60 61.7
Thhalv10019953m.g Eutrema salsugineum HOM05D004225 ORTHO05D004728 4.7e-11 72.0 60 61.7
Os07g0165200 Oryza sativa ssp. japonica HOM05D004225 ORTHO05D004728 4.7e-11 72.0 50 68.0
Sabra13G0049600 Salix brachista HOM05D004225 ORTHO05D004728 4.7e-11 72.0 51 66.7
SEGI_19878 Sequoiadendron giganteum HOM05D000005 ORTHO05D000239 4.7e-11 72.0 57 80.7
BcaC05g30250 Brassica carinata HOM05D004225 ORTHO05D004728 6.1e-11 71.6 60 61.7
BcaC05g30283 Brassica carinata HOM05D004225 ORTHO05D004728 6.1e-11 71.6 60 61.7
CANSAT78G2348 Cannabis sativa HOM05D004225 ORTHO05D004728 6.1e-11 71.6 51 64.7
Dinv11924 Davidia involucrata HOM05D004225 ORTHO05D004728 6.1e-11 71.6 50 66.0
Migut.J00760 Erythranthe guttata HOM05D004225 ORTHO05D004728 6.1e-11 71.6 60 63.3
Lalb_Chr14g0364611 Lupinus albus HOM05D004225 ORTHO05D004728 6.1e-11 71.6 52 63.5
RcHm_v2.0_Chr3g0496671 Rosa chinensis HOM05D004225 ORTHO05D004728 6.1e-11 71.6 51 66.7
SMO367G1027 Selaginella moellendorffii HOM05D004225 ORTHO05D004728 6.1e-11 71.6 50 64.0
vmacro07548 Vaccinium macrocarpon HOM05D004225 ORTHO05D004728 6.1e-11 71.6 50 70.0
BcaC05g29906 Brassica carinata HOM05D004225 ORTHO05D004728 8.0e-11 71.2 51 66.7
C05p63190 Brassica napus HOM05D004225 ORTHO05D004728 8.0e-11 71.2 51 66.7
BolC5t34981H Brassica oleracea HOM05D004225 ORTHO05D004728 8.0e-11 71.2 51 66.7
BraA05t23099Z Brassica rapa HOM05D004225 ORTHO05D004728 8.0e-11 71.2 51 66.7
CSS0005542 Camellia sinensis var. sinensis HOM05D004225 ORTHO05D004728 8.0e-11 71.2 50 68.0
CSS0022490 Camellia sinensis var. sinensis HOM05D004225 ORTHO05D004728 8.0e-11 71.2 50 68.0
ClCG02G007850 Citrullus lanatus HOM05D004225 ORTHO05D004728 1.0e-10 70.9 51 66.7
MELO3C024751.2 Cucumis melo HOM05D004225 ORTHO05D004728 1.0e-10 70.9 51 66.7
CsaV3_2G035890 Cucumis sativus L. HOM05D004225 ORTHO05D004728 1.0e-10 70.9 51 66.7
FvH4_1g28360 Fragaria vesca HOM05D004225 ORTHO05D004728 1.0e-10 70.9 51 64.7
FAN19G2926 Fragaria x ananassa HOM05D000495 ORTHO05D004728 1.0e-10 70.9 51 64.7
FAN23G2269 Fragaria x ananassa HOM05D004225 ORTHO05D004728 1.0e-10 70.9 51 64.7
FAN26G1663 Fragaria x ananassa HOM05D004225 ORTHO05D004728 1.0e-10 70.9 51 64.7
Potri.013G055300 Populus trichocarpa HOM05D004225 ORTHO05D004728 1.0e-10 70.9 51 66.7
QL09p009017 Quercus lobata HOM05D004225 ORTHO05D004728 1.0e-10 70.9 51 66.7
TPR.G31024 Trifolium pratense HOM05D004225 ORTHO05D004728 1.0e-10 70.9 51 64.7
Dinv25097 Davidia involucrata HOM05D004225 ORTHO05D004728 1.4e-10 70.5 50 66.0
CAN.G170.116 Capsicum annuum HOM05D004225 ORTHO05D004728 1.8e-10 70.1 58 56.9
Glyma.19G113700 Glycine max HOM05D004225 ORTHO05D004728 1.8e-10 70.1 51 64.7
GSVIVG01022462001 Vitis vinifera HOM05D004225 ORTHO05D004728 1.8e-10 70.1 51 62.7
AL3G13620 Arabidopsis lyrata HOM05D004225 ORTHO05D004728 2.3e-10 69.7 51 66.7
AT3G03790 Arabidopsis thaliana HOM05D004225 ORTHO05D004728 2.3e-10 69.7 51 66.7
Cc06_g07240 Coffea canephora HOM05D004225 ORTHO05D004728 2.3e-10 69.7 50 62.0
ECA238G0084 Erigeron canadensis HOM05D004225 ORTHO05D004728 2.3e-10 69.7 48 66.7
Prupe.7G007400 Prunus persica HOM05D004225 ORTHO05D004728 2.3e-10 69.7 53 60.4
Zm00001eb188870 Zea mays HOM05D004225 ORTHO05D004728 2.3e-10 69.7 50 64.0
Zm00001eb300770 Zea mays HOM05D004225 ORTHO05D004728 2.3e-10 69.7 50 64.0
Carub.0003s0296 Capsella rubella HOM05D004225 ORTHO05D004728 3.0e-10 69.3 51 64.7
Lsat_1_v5_gn_2_103941 Lactuca sativa HOM05D004225 ORTHO05D004728 3.0e-10 69.3 50 64.0
Lj2A418T70 Lonicera japonica HOM05D004225 ORTHO05D004728 3.0e-10 69.3 50 64.0
SHI13905 Sapria himalayana HOM05D004225 ORTHO05D004728 3.0e-10 69.3 64 51.6
Atru.chr2.1407 Acer truncatum HOM05D004225 ORTHO05D004728 4.0e-10 68.9 50 62.0
HanXRQChr14g0453121 Helianthus annuus HOM05D004225 ORTHO05D004728 4.0e-10 68.9 56 57.1
Phvul.001G113200 Phaseolus vulgaris HOM05D004225 ORTHO05D004728 4.0e-10 68.9 59 57.6
TAR633G1831 Trochodendron aralioides HOM05D004225 ORTHO05D004728 4.0e-10 68.9 51 64.7
arahy.Tifrunner.gnm1.ann1.4I2AVL Arachis hypogaea HOM05D004225 ORTHO05D004728 5.2e-10 68.6 51 62.7
arahy.Tifrunner.gnm1.ann1.MX8T8B Arachis hypogaea HOM05D004225 ORTHO05D004728 5.2e-10 68.6 51 62.7
Manes.09G139100 Manihot esculenta HOM05D004225 ORTHO05D004728 5.2e-10 68.6 59 54.2
Oeu029554.1 Olea europaea HOM05D004225 ORTHO05D004728 5.2e-10 68.6 54 59.3
Rhsim03G0054800 Rhododendron simsii HOM05D004225 ORTHO05D004728 5.2e-10 68.6 50 66.0
VMungo1383G3152 Vigna mungo HOM05D004225 ORTHO05D004728 5.2e-10 68.6 50 64.0
Aqoxy1G00553 Aquilegia oxysepala HOM05D004225 ORTHO05D004728 6.8e-10 68.2 51 66.7
Cpa.g.sc161.2 Carica papaya HOM05D004225 ORTHO05D004728 8.8e-10 67.8 51 62.7
CDE10G0988 Ceratophyllum demersum HOM05D004225 ORTHO05D004728 8.8e-10 67.8 50 64.0
Glyma.16G038900 Glycine max HOM05D004225 ORTHO05D004728 8.8e-10 67.8 51 62.7
Sc01g0005150 Simmondsia chinensis HOM05D004225 ORTHO05D004728 8.8e-10 67.8 50 64.0
EL10Ac5g11767 Beta vulgaris HOM05D004225 ORTHO05D004728 1.2e-09 67.4 51 58.8
CBR_g37355 Chara braunii HOM05D004225 ORTHO05D004728 1.2e-09 67.4 45 68.9
Zm00001eb190210 Zea mays HOM05D004225 ORTHO05D004728 1.2e-09 67.4 50 62.0
MSTRG.5924 Avicennia marina HOM05D004225 ORTHO05D004728 2.0e-09 66.6 54 61.1
Ah.12g059700 Amaranthus hybridus HOM05D004225 ORTHO05D004728 2.6e-09 66.2 50 58.0
unitig_27.g24735 Utricularia gibba HOM05D004225 ORTHO05D004728 2.6e-09 66.2 58 60.3
AUR62039726 Chenopodium quinoa HOM05D004225 ORTHO05D004728 3.4e-09 65.9 51 52.9
AUR62036278 Chenopodium quinoa HOM05D004225 ORTHO05D004728 4.4e-09 65.5 51 54.9
TWI32G0579 Tripterygium wilfordii HOM05D004225 ORTHO05D004728 4.4e-09 65.5 50 64.0
DCAR_020662 Daucus carota HOM05D004225 ORTHO05D004728 5.7e-09 65.1 58 56.9
Mapoly0007s0178 Marchantia polymorpha HOM05D004225 ORTHO05D004728 5.7e-09 65.1 67 55.2
TWI60G0668 Tripterygium wilfordii HOM05D004225 ORTHO05D004728 7.5e-09 64.7 50 60.0
SalBow3G0054 Salvia bowleyana HOM05D004225 ORTHO05D004728 1.7e-08 63.5 54 59.3
Zm00001eb072590 Zea mays HOM05D001185 ORTHO05D004728 1.1e-07 60.8 40 65.0
SEGI_01044 Sequoiadendron giganteum HOM05D005757 ORTHO05D007090 3.1e-07 59.3 30 80.0
Actinidia03947 Actinidia chinensis HOM05D004225 ORTHO05D004728 7.0e-07 58.2 50 60.0
SEGI_26673 Sequoiadendron giganteum HOM05D000073 ORTHO05D000033 7.7e-06 54.7 25 84.0


User provided reference genes

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