Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_36912 Sequoiadendron giganteum HOM05D006418 ORTHO05D008063 6.2e-48 193.7 94 100.0
vmacro13338 Vaccinium macrocarpon HOM05D006418 ORTHO05D008063 1.2e-14 83.2 58 60.3
Medtr8g032700 Medicago truncatula HOM05D006418 ORTHO05D008063 2.6e-14 82.0 54 64.8
Thecc.01G368600 Theobroma cacao HOM05D006418 ORTHO05D008063 3.4e-14 81.6 53 64.2
Cpa.g.sc18.197 Carica papaya HOM05D006418 ORTHO05D008063 5.9e-14 80.9 75 53.3
Ca_23755_v3 Cicer arietinum L. HOM05D006418 ORTHO05D008063 5.9e-14 80.9 54 63.0
VMungo0331G0376 Vigna mungo HOM05D006418 ORTHO05D008063 5.9e-14 80.9 54 68.5
GSVIVG01027527001 Vitis vinifera HOM05D006418 ORTHO05D008063 5.9e-14 80.9 55 61.8
Lj3g0006580 Lotus japonicus HOM05D006418 ORTHO05D008063 7.7e-14 80.5 54 68.5
QL08p050652 Quercus lobata HOM05D006418 ORTHO05D008063 7.7e-14 80.5 54 64.8
Os03g0117800 Oryza sativa ssp. japonica HOM05D006418 ORTHO05D008063 1.0e-13 80.1 75 53.3
PGSC0003DMG400017054 Solanum tuberosum HOM05D006418 ORTHO05D008063 1.0e-13 80.1 55 63.6
CSS0035566 Camellia sinensis var. sinensis HOM05D006418 ORTHO05D008063 1.3e-13 79.7 56 60.7
Atru.chr5.403 Acer truncatum HOM05D006418 ORTHO05D008063 1.7e-13 79.3 62 58.1
Ciclev10021113m.g Citrus clementina HOM05D006418 ORTHO05D008063 1.7e-13 79.3 93 49.5
MD07G1128500 Malus domestica HOM05D006418 ORTHO05D008063 1.7e-13 79.3 54 64.8
Phvul.010G092700 Phaseolus vulgaris HOM05D006418 ORTHO05D008063 1.7e-13 79.3 54 66.7
SMO356G0133 Selaginella moellendorffii HOM05D006418 ORTHO05D008063 1.7e-13 79.3 48 66.7
CiPaw.01G053600 Carya illinoinensis HOM05D006418 ORTHO05D008063 2.2e-13 79.0 54 61.1
Cc02_g37230 Coffea canephora HOM05D006418 ORTHO05D008063 2.2e-13 79.0 54 61.1
Hund27325 Selenicereus undatus HOM05D006418 ORTHO05D008063 2.2e-13 79.0 95 48.4
Glyma.03G017600 Glycine max HOM05D006418 ORTHO05D008063 2.9e-13 78.6 93 46.2
TPR.G17586 Trifolium pratense HOM05D006418 ORTHO05D008063 2.9e-13 78.6 54 61.1
CiPaw.01G023800 Carya illinoinensis HOM05D006418 ORTHO05D008063 3.8e-13 78.2 54 61.1
COL.COLO4_12625 Corchorus olitorius HOM05D006418 ORTHO05D008063 3.8e-13 78.2 54 63.0
Lj7A519G38 Lonicera japonica HOM05D006418 ORTHO05D008063 3.8e-13 78.2 54 64.8
Mapoly0138s0005 Marchantia polymorpha HOM05D006418 ORTHO05D008063 3.8e-13 78.2 62 58.1
PGR042G1311 Punica granatum HOM05D006418 ORTHO05D008063 3.8e-13 78.2 61 57.4
arahy.Tifrunner.gnm1.ann1.K1NG1D Arachis hypogaea HOM05D006418 ORTHO05D008063 5.0e-13 77.8 48 68.8
arahy.Tifrunner.gnm1.ann1.N7AMXP Arachis hypogaea HOM05D006418 ORTHO05D008063 5.0e-13 77.8 48 68.8
Duzib138G1515 Durio zibethinus HOM05D006418 ORTHO05D008063 5.0e-13 77.8 65 56.9
DCAR_025170 Daucus carota HOM05D006418 ORTHO05D008063 6.5e-13 77.4 54 61.1
FAN10G2923 Fragaria x ananassa HOM05D006418 ORTHO05D008063 6.5e-13 77.4 55 63.6
MBI12_g25033_MAGBIO Magnolia biondii HOM05D006418 ORTHO05D008063 6.5e-13 77.4 54 63.0
RcHm_v2.0_Chr1g0352261 Rosa chinensis HOM05D006418 ORTHO05D008063 6.5e-13 77.4 55 63.6
Solyc01g091780.4 Solanum lycopersicum HOM05D006418 ORTHO05D008063 6.5e-13 77.4 92 47.8
Sopen01g037560 Solanum pennellii HOM05D006418 ORTHO05D008063 6.5e-13 77.4 92 47.8
Psat4g151800 Pisum sativum HOM05D006418 ORTHO05D008063 8.5e-13 77.0 54 61.1
TAR375G0873 Trochodendron aralioides HOM05D006418 ORTHO05D008063 8.5e-13 77.0 54 61.1
CANSAT56G2190 Cannabis sativa HOM05D006418 ORTHO05D008063 1.1e-12 76.6 55 60.0
FAN01G2003 Fragaria x ananassa HOM05D006418 ORTHO05D008063 1.1e-12 76.6 55 61.8
Lalb_Chr10g0097531 Lupinus albus HOM05D006418 ORTHO05D008063 1.1e-12 76.6 49 65.3
Manes.01G262400 Manihot esculenta HOM05D006418 ORTHO05D008063 1.1e-12 76.6 54 59.3
CBR_g38943 Chara braunii HOM05D006418 ORTHO05D008063 1.4e-12 76.3 51 66.7
FvH4_7g13130 Fragaria vesca HOM05D006418 ORTHO05D008063 1.4e-12 76.3 55 61.8
FAN06G0540 Fragaria x ananassa HOM05D006418 ORTHO05D008063 1.4e-12 76.3 55 61.8
FAN06G3976 Fragaria x ananassa HOM05D006418 ORTHO05D008063 1.4e-12 76.3 55 61.8
HPP92_014577 Vanilla planifolia HOM05D006418 ORTHO05D008063 1.4e-12 76.3 72 51.4
Actinidia38288 Actinidia chinensis HOM05D006418 ORTHO05D008063 1.9e-12 75.9 54 59.3
Pp3c15_5030 Physcomitrium patens HOM05D006418 ORTHO05D008063 1.9e-12 75.9 68 54.4
Rhsim07G0021100 Rhododendron simsii HOM05D006418 ORTHO05D008063 1.9e-12 75.9 54 57.4
ATR0757G200 Amborella trichopoda HOM05D006418 ORTHO05D008063 2.5e-12 75.5 54 66.7
AagrBONN_evm.TU.Sc2ySwM_344.2134 Anthoceros agrestis HOM05D006418 ORTHO05D008063 2.5e-12 75.5 58 60.3
Gohir.D11G089100 Gossypium hirsutum HOM05D006418 ORTHO05D008063 2.5e-12 75.5 54 61.1
Gorai.007G095100 Gossypium raimondii HOM05D006418 ORTHO05D008063 2.5e-12 75.5 54 61.1
Nitab4.5_0004550g0130 Nicotiana tabacum HOM05D006418 ORTHO05D008063 2.5e-12 75.5 55 60.0
THA.LOC104827683 Tarenaya hassleriana HOM05D006418 ORTHO05D008063 2.5e-12 75.5 68 52.9
ClCG05G001910 Citrullus lanatus HOM05D006418 ORTHO05D008063 3.2e-12 75.1 75 49.3
Haze_15226 Corylus avellana HOM05D006418 ORTHO05D008063 3.2e-12 75.1 54 59.3
Dinv32422 Davidia involucrata HOM05D006418 ORTHO05D008063 3.2e-12 75.1 48 64.6
ECA236G1148 Erigeron canadensis HOM05D006418 ORTHO05D008063 3.2e-12 75.1 54 63.0
Eucgr.E00217 Eucalyptus grandis HOM05D006418 ORTHO05D008063 3.2e-12 75.1 51 62.7
Gohir.A11G084900 Gossypium hirsutum HOM05D006418 ORTHO05D008063 3.2e-12 75.1 54 61.1
HanXRQChr06g0169031 Helianthus annuus HOM05D006418 ORTHO05D008063 3.2e-12 75.1 51 64.7
Nitab4.5_0010430g0060 Nicotiana tabacum HOM05D006418 ORTHO05D008063 3.2e-12 75.1 55 60.0
EL10Ac1g00963 Beta vulgaris HOM05D006418 ORTHO05D008063 4.2e-12 74.7 62 56.5
FAN03G2411 Fragaria x ananassa HOM05D006418 ORTHO05D008063 4.2e-12 74.7 53 64.2
Hma1.2p1_0033F.1_g020630 Hydrangea macrophylla HOM05D006418 ORTHO05D008063 4.2e-12 74.7 54 59.3
Aa31LG10G15180 Aethionema arabicum HOM05D006418 ORTHO05D008063 5.5e-12 74.3 62 53.2
CDE01G0065 Ceratophyllum demersum HOM05D006418 ORTHO05D008063 5.5e-12 74.3 54 63.0
Sabra02G0121400 Salix brachista HOM05D006418 ORTHO05D008063 5.5e-12 74.3 61 54.1
TWI59G1449 Tripterygium wilfordii HOM05D006418 ORTHO05D008063 5.5e-12 74.3 54 61.1
Carub.0005s2773 Capsella rubella HOM05D006418 ORTHO05D008063 7.2e-12 73.9 54 57.4
Aqoxy5G03975 Aquilegia oxysepala HOM05D006418 ORTHO05D008063 9.4e-12 73.6 54 55.6
Peaxi162Scf00021g00525 Petunia axillaris HOM05D006418 ORTHO05D008063 9.4e-12 73.6 54 61.1
Potri.002G153100 Populus trichocarpa HOM05D006418 ORTHO05D008063 9.4e-12 73.6 61 50.8
AT3G61080 Arabidopsis thaliana HOM05D006418 ORTHO05D008063 1.2e-11 73.2 54 57.4
CAN.G170.50 Capsicum annuum HOM05D006418 ORTHO05D008063 1.2e-11 73.2 51 62.7
FAN10G0301 Fragaria x ananassa HOM05D006418 ORTHO05D008063 1.2e-11 73.2 55 60.0
BcaB02g07390 Brassica carinata HOM05D006418 ORTHO05D008063 1.6e-11 72.8 71 47.9
CiPaw.01G052800 Carya illinoinensis HOM05D006418 ORTHO05D008063 1.6e-11 72.8 50 60.0
Migut.B01688 Erythranthe guttata HOM05D006418 ORTHO05D008063 1.6e-11 72.8 54 63.0
Nn1g01350 Nelumbo nucifera HOM05D006418 ORTHO05D008063 1.6e-11 72.8 55 58.2
SGA_v2.0_scaffold95G28870 Striga asiatica HOM05D006418 ORTHO05D008063 2.1e-11 72.4 69 55.1
BcaC08g45098 Brassica carinata HOM05D006418 ORTHO05D008063 2.7e-11 72.0 54 55.6
C06p27060 Brassica napus HOM05D006418 ORTHO05D008063 2.7e-11 72.0 54 55.6
BolC6t37878H Brassica oleracea HOM05D006418 ORTHO05D008063 2.7e-11 72.0 54 55.6
AL5G43290 Arabidopsis lyrata HOM05D006418 ORTHO05D008063 3.6e-11 71.6 54 55.6
MELO3C006151.2 Cucumis melo HOM05D006418 ORTHO05D008063 3.6e-11 71.6 54 55.6
unitig_22.g5366 Utricularia gibba HOM05D003447 ORTHO05D003967 3.6e-11 71.6 54 57.4
Thhalv10006098m.g Eutrema salsugineum HOM05D006418 ORTHO05D008063 4.6e-11 71.2 54 57.4
PSO063G7157 Papaver somniferum HOM05D006418 ORTHO05D008063 4.6e-11 71.2 50 60.0
CARHR171390 Cardamine hirsuta HOM05D006418 ORTHO05D008063 6.1e-11 70.9 54 55.6
Sp5g02280 Schrenkiella parvula HOM05D006418 ORTHO05D008063 6.1e-11 70.9 54 55.6
Cfa004182 Carpinus fangiana HOM05D006418 ORTHO05D008063 1.0e-10 70.1 49 61.2
AUR62004291 Chenopodium quinoa HOM05D006418 ORTHO05D008063 1.4e-10 69.7 58 56.9
Hma1.2p1_0033F.1_g020640 Hydrangea macrophylla HOM05D006418 ORTHO05D008063 3.0e-10 68.6 47 61.7
SalBow3G2367 Salvia bowleyana HOM05D006418 ORTHO05D008063 3.0e-10 68.6 54 61.1
A07p25300 Brassica napus HOM05D006418 ORTHO05D008063 3.9e-10 68.2 54 53.7
BraA07t30173Z Brassica rapa HOM05D006418 ORTHO05D008063 3.9e-10 68.2 54 53.7
Zm00001eb001200 Zea mays HOM05D006418 ORTHO05D008063 3.9e-10 68.2 55 54.5
Sabra14G0055300 Salix brachista HOM05D006418 ORTHO05D008063 6.3e-08 60.8 53 49.1
Oeu024416.1 Olea europaea HOM05D006418 ORTHO05D008063 2.4e-07 58.9 52 51.9


User provided reference genes

Program Settings