Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_36835 Sequoiadendron giganteum HOM05D004002 ORTHO05D004668 9.6e-186 653.3 316 100.0
SEGI_17541 Sequoiadendron giganteum HOM05D004002 ORTHO05D004668 2.8e-129 465.7 219 100.0
TAR636G2372 Trochodendron aralioides HOM05D004002 ORTHO05D004668 1.7e-102 376.7 323 56.0
PSO170G6007 Papaver somniferum HOM05D004002 ORTHO05D004668 2.5e-101 372.9 316 57.3
PSO017G4586 Papaver somniferum HOM05D004002 ORTHO05D004668 1.6e-100 370.2 316 56.6
Nn2g12080 Nelumbo nucifera HOM05D004002 ORTHO05D004668 2.1e-100 369.8 321 55.8
MBI04_g29332_MAGBIO Magnolia biondii HOM05D004002 ORTHO05D004668 2.8e-100 369.4 316 57.6
Aqoxy7G02288 Aquilegia oxysepala HOM05D004002 ORTHO05D004668 1.1e-96 357.5 330 54.5
HPP92_024596 Vanilla planifolia HOM05D004002 ORTHO05D004668 1.9e-93 346.7 327 51.1
Mapoly0041s0113 Marchantia polymorpha HOM05D004002 ORTHO05D004668 4.3e-93 345.5 315 53.7
CDE03G0124 Ceratophyllum demersum HOM05D004002 ORTHO05D004668 1.6e-92 343.6 316 55.1
Pp3c7_2590 Physcomitrium patens HOM05D004002 ORTHO05D004668 2.9e-89 332.8 321 48.6
Pp3c11_23650 Physcomitrium patens HOM05D004002 ORTHO05D004668 3.2e-88 329.3 321 48.6
DCAR_014896 Daucus carota HOM05D004002 ORTHO05D004668 2.3e-86 323.2 317 50.8
CANSAT11G1469 Cannabis sativa HOM05D004002 ORTHO05D004668 6.6e-86 321.6 315 52.1
Dinv36495 Davidia involucrata HOM05D004002 ORTHO05D004668 6.6e-86 321.6 317 49.8
Solyc07g008090.4 Solanum lycopersicum HOM05D004002 ORTHO05D004668 1.9e-85 320.1 314 51.9
Sopen07g003960 Solanum pennellii HOM05D004002 ORTHO05D004668 4.3e-85 318.9 314 51.6
Cc06_g08210 Coffea canephora HOM05D004002 ORTHO05D004668 1.6e-84 317.0 319 50.8
MELO3C010320.2 Cucumis melo HOM05D004002 ORTHO05D004668 4.8e-84 315.5 314 50.3
Ciclev10007259m.g Citrus clementina HOM05D004002 ORTHO05D004668 8.1e-84 314.7 314 50.0
ClCG06G011370 Citrullus lanatus HOM05D004002 ORTHO05D004668 1.8e-83 313.5 313 50.5
TWI32G0682 Tripterygium wilfordii HOM05D004002 ORTHO05D004668 3.1e-83 312.8 317 49.5
CAN.G138.14 Capsicum annuum HOM05D004002 ORTHO05D004668 4.0e-83 312.4 317 49.8
Nitab4.5_0000028g0120 Nicotiana tabacum HOM05D004002 ORTHO05D004668 6.9e-83 311.6 315 49.2
Nitab4.5_0001776g0030 Nicotiana tabacum HOM05D004002 ORTHO05D004668 1.2e-82 310.8 315 48.6
CiPaw.03G246900 Carya illinoinensis HOM05D004002 ORTHO05D004668 1.5e-82 310.5 317 51.1
Hund26527 Selenicereus undatus HOM05D004002 ORTHO05D004668 3.4e-82 309.3 323 48.9
MD02G1028100 Malus domestica HOM05D004002 ORTHO05D004668 9.9e-82 307.8 316 50.3
Sp1g41730 Schrenkiella parvula HOM05D004002 ORTHO05D004668 1.3e-81 307.4 316 50.0
Sed0021658 Sechium edule HOM05D004002 ORTHO05D004668 1.3e-81 307.4 313 50.5
Prupe.7G246700 Prunus persica HOM05D004002 ORTHO05D004668 2.2e-81 306.6 317 50.2
Atru.chr7.1118 Acer truncatum HOM05D004002 ORTHO05D004668 2.9e-81 306.2 313 49.2
ATR1120G180 Amborella trichopoda HOM05D004002 ORTHO05D004668 4.9e-81 305.4 314 50.3
Duzib168G0398 Durio zibethinus HOM05D004002 ORTHO05D004668 4.9e-81 305.4 323 48.0
THA.LOC104811026 Tarenaya hassleriana HOM05D004002 ORTHO05D004668 6.4e-81 305.1 316 50.3
AT3G33530 Arabidopsis thaliana HOM05D004002 ORTHO05D004668 8.4e-81 304.7 313 49.8
Actinidia21966 Actinidia chinensis HOM05D004002 ORTHO05D004668 1.1e-80 304.3 322 47.5
Thhalv10011188m.g Eutrema salsugineum HOM05D004002 ORTHO05D004668 1.4e-80 303.9 314 49.4
Duzib187G1937 Durio zibethinus HOM05D004002 ORTHO05D004668 1.9e-80 303.5 320 48.1
Lj7A426T59 Lonicera japonica HOM05D004002 ORTHO05D004668 9.3e-80 301.2 324 48.5
HanXRQChr09g0241521 Helianthus annuus HOM05D004002 ORTHO05D004668 2.1e-79 300.1 330 46.1
QL02p089511 Quercus lobata HOM05D004002 ORTHO05D004668 2.1e-79 300.1 321 47.7
COL.COLO4_35123 Corchorus olitorius HOM05D004002 ORTHO05D004668 2.7e-79 299.7 327 45.9
Lalb_Chr13g0301701 Lupinus albus HOM05D004002 ORTHO05D004668 2.7e-79 299.7 313 47.3
Glyma.13G158400 Glycine max HOM05D004002 ORTHO05D004668 3.5e-79 299.3 315 48.9
Thecc.09G129800 Theobroma cacao HOM05D004002 ORTHO05D004668 6.0e-79 298.5 323 46.4
Lsat_1_v5_gn_7_43900 Lactuca sativa HOM05D004002 ORTHO05D004668 7.8e-79 298.1 329 47.4
MD15G1169800 Malus domestica HOM05D004002 ORTHO05D004668 7.8e-79 298.1 317 47.9
FAN19G2815 Fragaria x ananassa HOM05D004002 ORTHO05D004668 1.0e-78 297.7 318 48.4
FvH4_1g02820 Fragaria vesca HOM05D004002 ORTHO05D004668 1.7e-78 297.0 318 48.1
Aa31LG4G12760 Aethionema arabicum HOM05D004002 ORTHO05D004668 2.3e-78 296.6 316 48.7
FAN23G1361 Fragaria x ananassa HOM05D004002 ORTHO05D004668 3.0e-78 296.2 320 48.4
Gorai.001G043400 Gossypium raimondii HOM05D004002 ORTHO05D004668 3.0e-78 296.2 313 46.6
Gohir.D07G040800 Gossypium hirsutum HOM05D004002 ORTHO05D004668 3.9e-78 295.8 313 46.6
SalBow1G7082 Salvia bowleyana HOM05D004002 ORTHO05D004668 5.1e-78 295.4 314 47.1
Psat4g037880 Pisum sativum HOM05D004002 ORTHO05D004668 6.6e-78 295.0 313 48.2
FAN28G1420 Fragaria x ananassa HOM05D004002 ORTHO05D004668 8.7e-78 294.7 318 48.1
EL10Ac8g18695 Beta vulgaris HOM05D004002 ORTHO05D004668 1.1e-77 294.3 335 45.7
Lsat_1_v5_gn_8_62220 Lactuca sativa HOM05D004002 ORTHO05D004668 1.1e-77 294.3 328 47.6
Carub.0016s0010 Capsella rubella HOM05D004002 ORTHO05D004668 1.5e-77 293.9 316 49.4
VMungo1215G0854 Vigna mungo HOM05D004002 ORTHO05D004668 1.5e-77 293.9 314 47.8
Sc18g0000460 Simmondsia chinensis HOM05D004002 ORTHO05D004668 1.9e-77 293.5 327 47.7
Lj4g0004437 Lotus japonicus HOM05D004002 ORTHO05D004668 3.3e-77 292.7 313 48.2
Ca_06930_v3 Cicer arietinum L. HOM05D004002 ORTHO05D004668 1.3e-76 290.8 313 48.6
Ca_30460_v3 Cicer arietinum L. HOM05D004002 ORTHO05D004668 1.3e-76 290.8 313 48.6
BcaC08g43677 Brassica carinata HOM05D004002 ORTHO05D004668 1.6e-76 290.4 312 47.8
AUR62013328 Chenopodium quinoa HOM05D004002 ORTHO05D004668 1.6e-76 290.4 329 46.8
AL5G20770 Arabidopsis lyrata HOM05D004002 ORTHO05D004668 2.8e-76 289.7 316 47.8
C06p10960 Brassica napus HOM05D004002 ORTHO05D004668 3.6e-76 289.3 312 47.4
Haze_25542 Corylus avellana HOM05D004002 ORTHO05D004668 3.6e-76 289.3 315 47.6
BolC6t36178H Brassica oleracea HOM05D004002 ORTHO05D004668 6.2e-76 288.5 312 47.8
ECA236G2336 Erigeron canadensis HOM05D004002 ORTHO05D004668 6.2e-76 288.5 329 47.1
Gohir.D08G259100 Gossypium hirsutum HOM05D004002 ORTHO05D004668 1.1e-75 287.7 320 45.3
BcaB07g33169 Brassica carinata HOM05D004002 ORTHO05D004668 1.4e-75 287.3 316 45.6
Gorai.004G276600 Gossypium raimondii HOM05D004002 ORTHO05D004668 1.8e-75 287.0 320 45.0
HanXRQChr05g0143441 Helianthus annuus HOM05D004002 ORTHO05D004668 1.8e-75 287.0 328 45.7
vmacro20578 Vaccinium macrocarpon HOM05D004002 ORTHO05D004668 1.8e-75 287.0 313 46.6
Cfa003405 Carpinus fangiana HOM05D004002 ORTHO05D004668 3.1e-75 286.2 315 47.3
DCAR_010315 Daucus carota HOM05D004002 ORTHO05D004668 3.1e-75 286.2 319 46.4
Ah.09g225140 Amaranthus hybridus HOM05D004002 ORTHO05D004668 4.0e-75 285.8 324 47.8
Os02g0136933 Oryza sativa ssp. japonica HOM05D004002 ORTHO05D004668 4.0e-75 285.8 325 49.8
arahy.Tifrunner.gnm1.ann1.R22NLQ Arachis hypogaea HOM05D004002 ORTHO05D004668 6.9e-75 285.0 331 45.3
arahy.Tifrunner.gnm1.ann1.S50ZLM Arachis hypogaea HOM05D004002 ORTHO05D004668 6.9e-75 285.0 331 45.3
BraSC56t46385Z Brassica rapa HOM05D004002 ORTHO05D004668 6.9e-75 285.0 314 46.8
Aa31LG5G9160 Aethionema arabicum HOM05D004002 ORTHO05D004668 9.0e-75 284.6 319 48.3
Gohir.A07G036800 Gossypium hirsutum HOM05D004002 ORTHO05D004668 1.5e-74 283.9 313 45.4
Zm00001eb231770 Zea mays HOM05D004002 ORTHO05D004668 1.5e-74 283.9 320 48.8
Gohir.A08G238400 Gossypium hirsutum HOM05D004002 ORTHO05D004668 3.4e-74 282.7 320 44.7
Medtr4g114930 Medicago truncatula HOM05D004002 ORTHO05D004668 4.5e-74 282.3 313 47.9
THA.LOC104808973 Tarenaya hassleriana HOM05D004002 ORTHO05D004668 2.2e-73 280.0 322 45.3
Manes.14G114600 Manihot esculenta HOM05D004002 ORTHO05D004668 3.8e-73 279.3 318 45.3
Sabra18G0109300 Salix brachista HOM05D004002 ORTHO05D004668 3.2e-72 276.2 326 45.1
ECA240G1422 Erigeron canadensis HOM05D004002 ORTHO05D004668 1.2e-71 274.2 328 47.0
Potri.018G128400 Populus trichocarpa HOM05D004002 ORTHO05D004668 1.6e-71 273.9 326 44.8
SHI03372 Sapria himalayana HOM05D004002 ORTHO05D004668 2.7e-71 273.1 317 44.8
RcHm_v2.0_Chr2g0087941 Rosa chinensis HOM05D004002 ORTHO05D004668 3.5e-71 272.7 329 44.4
CsaV3_1G030400 Cucumis sativus L. HOM05D004002 ORTHO05D004668 3.9e-70 269.2 272 50.0
Rhsim01G0066800 Rhododendron simsii HOM05D004002 ORTHO05D004668 3.9e-70 269.2 324 45.4
AL4G19600 Arabidopsis lyrata HOM05D004002 ORTHO05D004668 6.7e-70 268.5 321 46.1
Lalb_Chr12g0198051 Lupinus albus HOM05D004002 ORTHO05D004668 3.3e-69 266.2 317 43.2
AT2G26610 Arabidopsis thaliana HOM05D004002 ORTHO05D004668 2.8e-68 263.1 320 45.9
Carub.0004s0687 Capsella rubella HOM05D004002 ORTHO05D004668 2.8e-68 263.1 318 45.9
BcaB01g03030 Brassica carinata HOM05D004002 ORTHO05D004668 1.4e-67 260.8 317 44.2
A03p26850 Brassica napus HOM05D004002 ORTHO05D004668 5.8e-66 255.4 312 42.9
BraA03t11897Z Brassica rapa HOM05D004002 ORTHO05D004668 5.8e-66 255.4 312 42.9
BcaC01g04911 Brassica carinata HOM05D004002 ORTHO05D004668 1.3e-65 254.2 312 42.9
C03p32190 Brassica napus HOM05D004002 ORTHO05D004668 1.9e-64 250.4 312 42.6
BolC3t15561H Brassica oleracea HOM05D004002 ORTHO05D004668 1.9e-64 250.4 312 42.6
Sp4g09400 Schrenkiella parvula HOM05D004002 ORTHO05D004668 1.0e-62 244.6 322 42.2
Migut.K00437 Erythranthe guttata HOM05D004002 ORTHO05D004668 2.3e-62 243.4 313 41.5
FAN26G1964 Fragaria x ananassa HOM05D004002 ORTHO05D004668 2.3e-62 243.4 320 41.9
CsaV3_UNG026150 Cucumis sativus L. HOM05D004002 ORTHO05D004668 5.1e-62 242.3 272 47.1
MSTRG.26413 Avicennia marina HOM05D004002 ORTHO05D004668 6.7e-62 241.9 271 45.4
Oeu012614.1 Olea europaea HOM05D004002 ORTHO05D004668 1.8e-59 233.8 321 40.8
SGA_v2.0_scaffold109G31044 Striga asiatica HOM05D004002 ORTHO05D004668 1.8e-59 233.8 237 48.1
TPR.G26484 Trifolium pratense HOM05D004002 ORTHO05D004668 1.8e-54 217.2 311 39.9
CBR_g41081 Chara braunii HOM05D004002 ORTHO05D004668 6.3e-52 208.8 347 36.0
Eucgr.C04259 Eucalyptus grandis HOM05D004002 ORTHO05D004668 8.2e-52 208.4 220 47.3
Aqoxy7G02287 Aquilegia oxysepala HOM05D004002 ORTHO05D004668 1.1e-51 208.0 260 43.5
GSVIVG01015557001 Vitis vinifera HOM05D004002 ORTHO05D004668 1.4e-51 207.6 281 42.0
Haze_13487 Corylus avellana HOM05D004002 ORTHO05D004668 2.0e-50 203.8 239 44.8
Dinv41489 Davidia involucrata HOM05D004002 ORTHO05D004668 1.4e-46 191.0 244 43.4
Cpa.g.sc46.23 Carica papaya HOM05D004002 ORTHO05D004668 2.8e-44 183.3 333 36.9
CDE04G2506 Ceratophyllum demersum HOM05D004002 ORTHO05D004668 1.1e-40 171.4 172 50.6
AUR62011160 Chenopodium quinoa HOM05D004002 ORTHO05D004668 5.9e-34 149.1 220 35.5
Haze_18451 Corylus avellana HOM05D004002 ORTHO05D004668 2.0e-29 134.0 131 50.4
unitig_748.g7159 Utricularia gibba HOM05D004002 ORTHO05D004668 3.5e-26 123.2 296 28.4
FAN23G2019 Fragaria x ananassa HOM05D004002 ORTHO05D004668 7.5e-21 105.5 127 41.7
Cre10.g449950 Chlamydomonas reinhardtii HOM05D004002 ORTHO05D004668 6.3e-20 102.4 354 24.0
Nn8g39500 Nelumbo nucifera HOM05D004002 ORTHO05D004668 6.3e-20 102.4 67 71.6
SMO347G0439 Selaginella moellendorffii HOM05D004002 ORTHO05D004668 8.0e-15 85.5 74 56.8


User provided reference genes

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