Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_36765 Sequoiadendron giganteum HOM05D003804 ORTHO05D004350 4.5e-169 597.8 298 100.0
MBI10_g37182_MAGBIO Magnolia biondii HOM05D003804 ORTHO05D004350 2.8e-94 349.4 303 57.4
ATR0801G001 Amborella trichopoda HOM05D003804 ORTHO05D004350 3.1e-93 345.9 302 60.3
TAR636G0278 Trochodendron aralioides HOM05D003804 ORTHO05D004350 3.1e-93 345.9 301 57.5
Mapoly0009s0041 Marchantia polymorpha HOM05D003804 ORTHO05D004350 5.3e-93 345.1 301 57.8
MBI07_g30495_MAGBIO Magnolia biondii HOM05D003804 ORTHO05D004350 7.6e-92 341.3 303 58.7
GSVIVG01023535001 Vitis vinifera HOM05D003804 ORTHO05D004350 3.8e-91 339.0 301 57.1
Potri.013G049100 Populus trichocarpa HOM05D003804 ORTHO05D004350 2.7e-89 332.8 299 57.5
Ciclev10031149m.g Citrus clementina HOM05D003804 ORTHO05D004350 2.3e-88 329.7 300 55.0
arahy.Tifrunner.gnm1.ann1.PMT11X Arachis hypogaea HOM05D003804 ORTHO05D004350 3.0e-88 329.3 298 55.7
PGR004G0836 Punica granatum HOM05D003804 ORTHO05D004350 1.1e-87 327.4 301 53.8
COL.COLO4_15533 Corchorus olitorius HOM05D003804 ORTHO05D004350 1.5e-87 327.0 298 56.4
Lj1g0028056 Lotus japonicus HOM05D003804 ORTHO05D004350 1.5e-87 327.0 300 56.0
Medtr7g115460 Medicago truncatula HOM05D003804 ORTHO05D004350 4.3e-87 325.5 303 56.4
Thecc.05G266900 Theobroma cacao HOM05D003804 ORTHO05D004350 4.3e-87 325.5 298 55.4
Dinv08268 Davidia involucrata HOM05D003804 ORTHO05D004350 7.4e-87 324.7 299 55.5
CSS0050159 Camellia sinensis var. sinensis HOM05D003804 ORTHO05D004350 1.3e-86 323.9 299 56.2
Lj5g0014193 Lotus japonicus HOM05D003804 ORTHO05D004350 1.6e-86 323.6 303 56.1
Ca_10028_v3 Cicer arietinum L. HOM05D003804 ORTHO05D004350 4.8e-86 322.0 300 55.7
Cpa.g.sc51.6 Carica papaya HOM05D003804 ORTHO05D004350 6.3e-86 321.6 300 53.7
PSO063G7164 Papaver somniferum HOM05D003804 ORTHO05D004350 1.1e-85 320.9 301 54.2
Phvul.006G104100 Phaseolus vulgaris HOM05D003804 ORTHO05D004350 1.1e-85 320.9 301 55.5
QL03p029246 Quercus lobata HOM05D003804 ORTHO05D004350 1.8e-85 320.1 301 55.5
EL10Ac4g09070 Beta vulgaris HOM05D003804 ORTHO05D004350 3.1e-85 319.3 300 55.7
Glyma.03G249500 Glycine max HOM05D003804 ORTHO05D004350 3.1e-85 319.3 300 55.3
PSO017G7263 Papaver somniferum HOM05D003804 ORTHO05D004350 3.1e-85 319.3 301 54.2
Psat0s3161g0200 Pisum sativum HOM05D003804 ORTHO05D004350 3.1e-85 319.3 303 55.8
TWI32G1243 Tripterygium wilfordii HOM05D003804 ORTHO05D004350 3.1e-85 319.3 300 53.7
Ah.06g191850 Amaranthus hybridus HOM05D003804 ORTHO05D004350 4.1e-85 318.9 300 53.3
Cfa006383 Carpinus fangiana HOM05D003804 ORTHO05D004350 4.1e-85 318.9 300 54.7
VMungo0720G0320 Vigna mungo HOM05D003804 ORTHO05D004350 4.1e-85 318.9 299 54.8
Glyma.19G247000 Glycine max HOM05D003804 ORTHO05D004350 5.3e-85 318.5 300 55.7
CSS0024163 Camellia sinensis var. sinensis HOM05D003804 ORTHO05D004350 6.9e-85 318.2 299 55.5
Duzib177G0700 Durio zibethinus HOM05D003804 ORTHO05D004350 6.9e-85 318.2 297 55.2
FAN09G3890 Fragaria x ananassa HOM05D003804 ORTHO05D004350 6.9e-85 318.2 300 55.0
Lalb_Chr04g0262141 Lupinus albus HOM05D003804 ORTHO05D004350 9.0e-85 317.8 303 55.8
VMungo0540G0271 Vigna mungo HOM05D003804 ORTHO05D004350 9.0e-85 317.8 298 54.7
CSS0040175 Camellia sinensis var. sinensis HOM05D003804 ORTHO05D004350 1.5e-84 317.0 299 54.8
CiPaw.07G070900 Carya illinoinensis HOM05D003804 ORTHO05D004350 1.5e-84 317.0 299 53.8
Dinv14606 Davidia involucrata HOM05D003804 ORTHO05D004350 1.5e-84 317.0 299 53.8
TPR.G26623 Trifolium pratense HOM05D003804 ORTHO05D004350 1.5e-84 317.0 301 54.8
Lsat_1_v5_gn_8_2841 Lactuca sativa HOM05D003804 ORTHO05D004350 2.0e-84 316.6 297 53.5
Phvul.007G116100 Phaseolus vulgaris HOM05D003804 ORTHO05D004350 2.6e-84 316.2 300 55.0
Duzib106G1801 Durio zibethinus HOM05D003804 ORTHO05D004350 3.4e-84 315.8 299 54.8
ECA233G2677 Erigeron canadensis HOM05D003804 ORTHO05D004350 3.4e-84 315.8 297 54.5
FAN02G4114 Fragaria x ananassa HOM05D003804 ORTHO05D004350 3.4e-84 315.8 300 55.0
Sabra13G0045400 Salix brachista HOM05D003804 ORTHO05D004350 3.4e-84 315.8 299 55.2
arahy.Tifrunner.gnm1.ann1.A208ZV Arachis hypogaea HOM05D003804 ORTHO05D004350 4.5e-84 315.5 321 51.4
FAN05G4825 Fragaria x ananassa HOM05D003804 ORTHO05D004350 5.9e-84 315.1 300 54.7
TWI60G0892 Tripterygium wilfordii HOM05D003804 ORTHO05D004350 7.6e-84 314.7 300 53.3
MD04G1232600 Malus domestica HOM05D003804 ORTHO05D004350 1.0e-83 314.3 300 53.7
Medtr1g080460 Medicago truncatula HOM05D003804 ORTHO05D004350 1.0e-83 314.3 300 54.0
Peaxi162Scf00015g03111 Petunia axillaris HOM05D003804 ORTHO05D004350 1.0e-83 314.3 299 53.8
Sopen04g005060 Solanum pennellii HOM05D003804 ORTHO05D004350 1.7e-83 313.5 299 55.5
TPR.G6978 Trifolium pratense HOM05D003804 ORTHO05D004350 1.7e-83 313.5 303 55.4
Psat6g144120 Pisum sativum HOM05D003804 ORTHO05D004350 2.2e-83 313.2 301 54.8
FAN14G2706 Fragaria x ananassa HOM05D003804 ORTHO05D004350 2.9e-83 312.8 300 54.7
HanXRQChr07g0194371 Helianthus annuus HOM05D003804 ORTHO05D004350 2.9e-83 312.8 297 54.2
Cc02_g08970 Coffea canephora HOM05D003804 ORTHO05D004350 3.8e-83 312.4 298 52.3
FvH4_6g01530 Fragaria vesca HOM05D003804 ORTHO05D004350 3.8e-83 312.4 300 54.7
FAN14G4672 Fragaria x ananassa HOM05D003804 ORTHO05D004350 3.8e-83 312.4 300 54.7
Solyc04g009920.3 Solanum lycopersicum HOM05D003804 ORTHO05D004350 5.0e-83 312.0 299 55.2
FAN05G4636 Fragaria x ananassa HOM05D003804 ORTHO05D004350 6.5e-83 311.6 300 54.7
RcHm_v2.0_Chr3g0449231 Rosa chinensis HOM05D003804 ORTHO05D004350 6.5e-83 311.6 300 54.0
PGSC0003DMG400011479 Solanum tuberosum HOM05D003804 ORTHO05D004350 1.1e-82 310.8 299 55.2
Nitab4.5_0001372g0080 Nicotiana tabacum HOM05D003804 ORTHO05D004350 1.4e-82 310.5 299 54.2
THA.LOC104827281 Tarenaya hassleriana HOM05D003804 ORTHO05D004350 1.4e-82 310.5 305 53.1
Gohir.D13G172400 Gossypium hirsutum HOM05D003804 ORTHO05D004350 1.9e-82 310.1 297 53.2
Gorai.013G188300 Gossypium raimondii HOM05D003804 ORTHO05D004350 2.5e-82 309.7 297 53.2
Peaxi162Scf00135g00416 Petunia axillaris HOM05D003804 ORTHO05D004350 2.5e-82 309.7 299 55.5
Lalb_Chr06g0168201 Lupinus albus HOM05D003804 ORTHO05D004350 4.2e-82 308.9 303 52.8
Solyc05g055040.3 Solanum lycopersicum HOM05D003804 ORTHO05D004350 7.2e-82 308.1 298 54.0
Gohir.A13G161600 Gossypium hirsutum HOM05D003804 ORTHO05D004350 1.6e-81 307.0 297 53.2
Aqoxy2G03639 Aquilegia oxysepala HOM05D003804 ORTHO05D004350 2.1e-81 306.6 303 51.8
HanXRQChr08g0225481 Helianthus annuus HOM05D003804 ORTHO05D004350 2.1e-81 306.6 296 53.0
Prupe.6G352300 Prunus persica HOM05D003804 ORTHO05D004350 2.1e-81 306.6 300 53.0
Thhalv10020458m.g Eutrema salsugineum HOM05D003804 ORTHO05D004350 2.7e-81 306.2 304 52.3
Rhsim09G0137900 Rhododendron simsii HOM05D003804 ORTHO05D004350 2.7e-81 306.2 298 53.7
CAN.G1465.5 Capsicum annuum HOM05D003804 ORTHO05D004350 3.6e-81 305.8 298 53.4
MD12G1250100 Malus domestica HOM05D003804 ORTHO05D004350 3.6e-81 305.8 300 53.3
PGSC0003DMG400023500 Solanum tuberosum HOM05D003804 ORTHO05D004350 3.6e-81 305.8 298 53.4
Haze_04395 Corylus avellana HOM05D003804 ORTHO05D004350 4.6e-81 305.4 303 54.1
ECA238G1424 Erigeron canadensis HOM05D003804 ORTHO05D004350 4.6e-81 305.4 297 54.2
Nitab4.5_0003768g0060 Nicotiana tabacum HOM05D003804 ORTHO05D004350 4.6e-81 305.4 307 54.1
Sopen05g033500 Solanum pennellii HOM05D003804 ORTHO05D004350 4.6e-81 305.4 298 53.7
CAN.G1609.2 Capsicum annuum HOM05D003804 ORTHO05D004350 6.1e-81 305.1 299 54.8
Os02g0624400 Oryza sativa ssp. japonica HOM05D003804 ORTHO05D004350 6.1e-81 305.1 299 51.8
arahy.Tifrunner.gnm1.ann1.Y446PZ Arachis hypogaea HOM05D003804 ORTHO05D004350 1.0e-80 304.3 326 48.8
AUR62040937 Chenopodium quinoa HOM05D003804 ORTHO05D004350 2.3e-80 303.1 300 52.3
AUR62004854 Chenopodium quinoa HOM05D003804 ORTHO05D004350 3.0e-80 302.8 300 52.3
Glyma.20G226800 Glycine max HOM05D003804 ORTHO05D004350 3.0e-80 302.8 300 53.7
Nitab4.5_0001268g0010 Nicotiana tabacum HOM05D003804 ORTHO05D004350 3.9e-80 302.4 299 53.8
Aa31LG5G14820 Aethionema arabicum HOM05D003804 ORTHO05D004350 6.7e-80 301.6 304 51.3
CSS0006152 Camellia sinensis var. sinensis HOM05D003804 ORTHO05D004350 1.1e-79 300.8 299 54.2
Carub.0003s0354 Capsella rubella HOM05D003804 ORTHO05D004350 1.1e-79 300.8 304 52.0
Thhalv10013196m.g Eutrema salsugineum HOM05D003804 ORTHO05D004350 1.1e-79 300.8 296 53.0
CARHR078510 Cardamine hirsuta HOM05D003804 ORTHO05D004350 1.9e-79 300.1 304 51.0
Sp3g03220 Schrenkiella parvula HOM05D003804 ORTHO05D004350 3.3e-79 299.3 304 52.3
BcaNung04819 Brassica carinata HOM05D003804 ORTHO05D004350 5.7e-79 298.5 304 51.6
Rhsim05G0175100 Rhododendron simsii HOM05D003804 ORTHO05D004350 5.7e-79 298.5 299 54.5
ClCG11G010310 Citrullus lanatus HOM05D003804 ORTHO05D004350 7.4e-79 298.1 299 50.8
arahy.Tifrunner.gnm1.ann1.Y4X76M Arachis hypogaea HOM05D003804 ORTHO05D004350 9.7e-79 297.7 317 49.5
Sp6g25840 Schrenkiella parvula HOM05D003804 ORTHO05D004350 2.8e-78 296.2 296 51.7
Manes.08G141400 Manihot esculenta HOM05D003804 ORTHO05D004350 4.8e-78 295.4 298 51.7
Oeu012230.1 Olea europaea HOM05D003804 ORTHO05D004350 8.2e-78 294.7 298 51.0
BcaC09g47809 Brassica carinata HOM05D003804 ORTHO05D004350 1.1e-77 294.3 304 51.3
A01p40890 Brassica napus HOM05D003804 ORTHO05D004350 1.1e-77 294.3 305 51.5
BNapus_Darmor_BZH_scaffold_78p00820 Brassica napus HOM05D003804 ORTHO05D004350 1.1e-77 294.3 305 51.5
Nitab4.5_0000687g0070 Nicotiana tabacum HOM05D006502 ORTHO05D004350 1.1e-77 294.3 327 48.9
Os04g0517400 Oryza sativa ssp. japonica HOM05D003804 ORTHO05D004350 1.1e-77 294.3 295 50.2
CsaV3_2G010010 Cucumis sativus L. HOM05D003804 ORTHO05D004350 3.1e-77 292.7 299 50.5
Sed0002107 Sechium edule HOM05D003804 ORTHO05D004350 3.1e-77 292.7 299 49.8
CANSAT56G0982 Cannabis sativa HOM05D003804 ORTHO05D004350 4.1e-77 292.4 299 51.8
SGA_v2.0_scaffold111G31426 Striga asiatica HOM05D003804 ORTHO05D004350 4.1e-77 292.4 300 49.3
CDE08G1101 Ceratophyllum demersum HOM05D003804 ORTHO05D004350 9.0e-77 291.2 301 49.5
Migut.F00805 Erythranthe guttata HOM05D003804 ORTHO05D004350 9.0e-77 291.2 298 49.3
SalBow3G4606 Salvia bowleyana HOM05D003804 ORTHO05D004350 2.6e-76 289.7 297 50.2
Sed0018274 Sechium edule HOM05D003804 ORTHO05D004350 2.6e-76 289.7 299 50.8
Zm00001eb426690 Zea mays HOM05D003804 ORTHO05D004350 2.6e-76 289.7 297 49.5
Gohir.A11G244900 Gossypium hirsutum HOM05D003804 ORTHO05D004350 3.4e-76 289.3 299 51.2
CARHR194530 Cardamine hirsuta HOM05D003804 ORTHO05D004350 4.5e-76 288.9 298 51.3
BraA01t04524Z Brassica rapa HOM05D003804 ORTHO05D004350 5.9e-76 288.5 304 51.3
BolC1t05753H Brassica oleracea HOM05D003804 ORTHO05D004350 1.0e-75 287.7 305 51.1
Lj2A40T58 Lonicera japonica HOM05D003804 ORTHO05D004350 1.7e-75 287.0 319 48.3
Pp3c1_6500 Physcomitrium patens HOM05D003804 ORTHO05D004350 2.2e-75 286.6 302 48.7
BolC3t13517H Brassica oleracea HOM05D003804 ORTHO05D004350 6.5e-75 285.0 302 51.7
BcaB05g23331 Brassica carinata HOM05D003804 ORTHO05D004350 1.1e-74 284.3 298 50.3
A03p08890 Brassica napus HOM05D003804 ORTHO05D004350 1.4e-74 283.9 297 51.2
Pp3c2_32110 Physcomitrium patens HOM05D003804 ORTHO05D004350 1.9e-74 283.5 301 48.2
Carub.0006s1676 Capsella rubella HOM05D003804 ORTHO05D004350 3.2e-74 282.7 296 52.7
Aa31LG11G11120 Aethionema arabicum HOM05D003804 ORTHO05D004350 4.2e-74 282.3 298 49.7
CDE02G2550 Ceratophyllum demersum HOM05D003804 ORTHO05D004350 4.2e-74 282.3 304 48.0
Sc09g0004190 Simmondsia chinensis HOM05D003804 ORTHO05D004350 7.2e-74 281.6 269 53.9
AL6G29740 Arabidopsis lyrata HOM05D003804 ORTHO05D004350 9.4e-74 281.2 296 50.3
AT5G18480 Arabidopsis thaliana HOM05D003804 ORTHO05D004350 9.4e-74 281.2 296 50.0
C03p10370 Brassica napus HOM05D003804 ORTHO05D004350 1.2e-73 280.8 302 51.3
BraA03t10215Z Brassica rapa HOM05D003804 ORTHO05D004350 1.2e-73 280.8 302 51.3
BcaC03g13603 Brassica carinata HOM05D003804 ORTHO05D004350 6.1e-73 278.5 298 50.0
BcaB01g04900 Brassica carinata HOM05D003804 ORTHO05D004350 1.4e-72 277.3 296 50.0
Actinidia40003 Actinidia chinensis HOM05D003804 ORTHO05D004350 3.9e-72 275.8 279 51.3
DCAR_023877 Daucus carota HOM05D003804 ORTHO05D004350 8.8e-72 274.6 298 48.7
MSTRG.27378 Avicennia marina HOM05D003804 ORTHO05D004350 1.1e-71 274.2 298 47.3
A02p04940 Brassica napus HOM05D003804 ORTHO05D004350 7.4e-71 271.6 299 47.8
BolC2t06899H Brassica oleracea HOM05D003804 ORTHO05D004350 7.4e-71 271.6 299 49.5
BraA02t05453Z Brassica rapa HOM05D003804 ORTHO05D004350 9.7e-71 271.2 299 48.8
Ca_09447_v3 Cicer arietinum L. HOM05D003804 ORTHO05D004350 2.2e-70 270.0 270 53.3
C02p09920 Brassica napus HOM05D003804 ORTHO05D004350 3.7e-70 269.2 297 48.8
vmacro10357 Vaccinium macrocarpon HOM05D003804 ORTHO05D004350 3.4e-68 262.7 298 48.3
SMO364G0002 Selaginella moellendorffii HOM05D003804 ORTHO05D004350 4.2e-66 255.8 301 47.2
Hund22153 Selenicereus undatus HOM05D003804 ORTHO05D004350 1.6e-65 253.8 300 48.3
TAR365G0644 Trochodendron aralioides HOM05D003804 ORTHO05D004350 3.9e-64 249.2 268 50.7
Oeu016029.1 Olea europaea HOM05D003804 ORTHO05D004350 3.1e-61 239.6 263 49.0
CBR_g3073 Chara braunii HOM05D003804 ORTHO05D004350 1.4e-53 214.2 319 39.5
Lsat_1_v5_gn_2_107981 Lactuca sativa HOM05D003804 ORTHO05D004350 4.4e-47 192.6 256 43.4
Atru.chr2.1109 Acer truncatum HOM05D003804 ORTHO05D004350 3.4e-39 166.4 143 59.4
Atru.chr2.1108 Acer truncatum HOM05D003804 ORTHO05D004350 2.7e-36 156.8 126 58.7
Gorai.007G273500 Gossypium raimondii HOM05D003804 ORTHO05D004350 5.0e-35 152.5 297 34.3
Eucgr.H04216 Eucalyptus grandis HOM05D003804 ORTHO05D004350 3.6e-33 146.4 149 50.3
MELO3C008614.2 Cucumis melo HOM05D003804 ORTHO05D004350 5.4e-29 132.5 128 49.2
unitig_32.g11828 Utricularia gibba HOM05D003804 ORTHO05D004350 1.7e-27 127.5 145 43.4
Glyma.10G164501 Glycine max HOM05D003804 ORTHO05D004350 1.1e-26 124.8 119 57.1
AagrBONN_evm.TU.Sc2ySwM_228.2512 Anthoceros agrestis HOM05D003804 ORTHO05D004350 1.0e-24 118.2 144 47.9
HanXRQChr01g0012051 Helianthus annuus HOM05D003804 ORTHO05D004350 1.8e-24 117.5 194 37.1
Gohir.D11G254801 Gossypium hirsutum HOM05D003804 ORTHO05D004350 9.8e-23 111.7 121 51.2
HPP92_001761 Vanilla planifolia HOM05D003804 ORTHO05D004350 3.7e-22 109.8 170 42.4
TAR365G0429 Trochodendron aralioides HOM05D003804 ORTHO05D004350 1.9e-13 80.9 35 88.6
PRCOL_00006236 Prasinoderma coloniale HOM05D003804 ORTHO05D004350 1.2e-12 78.2 320 27.5
Cre10.g422450 Chlamydomonas reinhardtii HOM05D003804 ORTHO05D004350 1.5e-07 61.2 68 35.3
PRCOL_00003452 Prasinoderma coloniale HOM05D003804 ORTHO05D004350 1.3e-06 58.2 303 23.4


User provided reference genes

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