Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_36720 Sequoiadendron giganteum HOM05D003900 ORTHO05D005009 2.2e-214 750.4 374 100.0
Cc02_g38560 Coffea canephora HOM05D003900 ORTHO05D005009 4.4e-21 108.2 229 31.4
CDE10G0308 Ceratophyllum demersum HOM05D003834 ORTHO05D004483 9.8e-21 107.1 233 33.5
MBI11_g19575_MAGBIO Magnolia biondii HOM05D003900 ORTHO05D005009 2.9e-20 105.5 252 33.3
SEGI_36951 Sequoiadendron giganteum HOM05D003900 ORTHO05D005009 3.7e-20 105.1 111 46.8
Dinv43863 Davidia involucrata HOM05D003900 ORTHO05D005009 1.8e-19 102.8 239 32.2
SEGI_22918 Sequoiadendron giganteum HOM05D000506 ORTHO05D000369 2.0e-18 99.4 57 84.2
TAR629G0263 Trochodendron aralioides HOM05D003900 ORTHO05D005009 3.5e-18 98.6 223 31.8
CSS0000093 Camellia sinensis var. sinensis HOM05D003900 ORTHO05D005009 5.0e-17 94.7 241 29.9
CSS0016355 Camellia sinensis var. sinensis HOM05D003900 ORTHO05D005009 5.0e-17 94.7 241 29.9
Duzib138G1643 Durio zibethinus HOM05D003900 ORTHO05D005009 5.0e-17 94.7 214 31.3
Manes.01G252300 Manihot esculenta HOM05D003900 ORTHO05D005009 1.1e-16 93.6 234 29.9
Atru.chr5.581 Acer truncatum HOM05D003900 ORTHO05D005009 1.9e-16 92.8 241 31.5
Thecc.01G352500 Theobroma cacao HOM05D003900 ORTHO05D005009 2.5e-16 92.4 238 31.1
Atru.chr5.563 Acer truncatum HOM05D003900 ORTHO05D005009 3.3e-16 92.0 240 30.8
Nitab4.5_0010695g0010 Nicotiana tabacum HOM05D003900 ORTHO05D005009 4.3e-16 91.7 226 29.6
Aa31LG10G15460 Aethionema arabicum HOM05D003900 ORTHO05D005009 7.3e-16 90.9 174 35.1
Gohir.A12G106900 Gossypium hirsutum HOM05D003900 ORTHO05D005009 9.5e-16 90.5 247 28.7
SalBow3G3666 Salvia bowleyana HOM05D003900 ORTHO05D005009 1.6e-15 89.7 226 28.8
Solyc01g095110.4 Solanum lycopersicum HOM05D003900 ORTHO05D005009 1.6e-15 89.7 226 28.3
Sopen01g038900 Solanum pennellii HOM05D003900 ORTHO05D005009 1.6e-15 89.7 226 28.8
ATR0721G158 Amborella trichopoda HOM05D003900 ORTHO05D005009 2.8e-15 89.0 224 32.6
SEGI_32929 Sequoiadendron giganteum HOM05D003900 ORTHO05D384170 3.6e-15 88.6 106 45.3
Lj7C507T1 Lonicera japonica HOM05D003900 ORTHO05D005009 4.7e-15 88.2 226 31.0
THA.LOC104817316 Tarenaya hassleriana HOM05D003900 ORTHO05D005009 6.2e-15 87.8 256 28.1
Gohir.D12G110200 Gossypium hirsutum HOM05D003900 ORTHO05D005009 8.0e-15 87.4 217 30.4
Sp4g28170 Schrenkiella parvula HOM05D003900 ORTHO05D005009 8.0e-15 87.4 226 28.8
Gorai.008G119500 Gossypium raimondii HOM05D003900 ORTHO05D005009 1.0e-14 87.0 217 30.9
Peaxi162Scf00020g00155 Petunia axillaris HOM05D003900 ORTHO05D005009 2.3e-14 85.9 248 27.0
SEGI_14951 Sequoiadendron giganteum HOM05D003900 ORTHO05D005009 2.3e-14 85.9 152 34.9
PGSC0003DMG400000195 Solanum tuberosum HOM05D003900 ORTHO05D005009 2.3e-14 85.9 226 28.3
CAN.G78.130 Capsicum annuum HOM05D003900 ORTHO05D005009 4.0e-14 85.1 256 28.5
CARHR171850 Cardamine hirsuta HOM05D003900 ORTHO05D005009 4.0e-14 85.1 272 26.5
QL04p055515 Quercus lobata HOM05D003900 ORTHO05D005009 4.0e-14 85.1 233 29.6
vmacro13229 Vaccinium macrocarpon HOM05D003900 ORTHO05D005009 4.0e-14 85.1 228 27.2
Thhalv10001319m.g Eutrema salsugineum HOM05D003900 ORTHO05D005009 5.2e-14 84.7 204 29.9
Sc01g0003220 Simmondsia chinensis HOM05D003900 ORTHO05D005009 5.2e-14 84.7 208 28.8
Nn1g01685 Nelumbo nucifera HOM05D003900 ORTHO05D005009 6.8e-14 84.3 228 28.5
RcHm_v2.0_Chr1g0357681 Rosa chinensis HOM05D003900 ORTHO05D005009 8.9e-14 84.0 224 26.8
PSO384G0446 Papaver somniferum HOM05D003900 ORTHO05D005009 1.2e-13 83.6 182 30.8
Carub.0005s2821 Capsella rubella HOM05D003900 ORTHO05D005009 2.0e-13 82.8 174 34.5
SGA_v2.0_scaffold4G02283 Striga asiatica HOM05D003900 ORTHO05D005009 2.6e-13 82.4 238 26.9
Rhsim07G0010500 Rhododendron simsii HOM05D003900 ORTHO05D005009 3.4e-13 82.0 228 28.5
AL5G43880 Arabidopsis lyrata HOM05D003900 ORTHO05D005009 4.4e-13 81.6 227 28.6
Manes.05G029400 Manihot esculenta HOM05D003900 ORTHO05D005009 9.8e-13 80.5 208 30.8
Sed0017189 Sechium edule HOM05D003900 ORTHO05D005009 9.8e-13 80.5 176 31.8
CiPaw.01G067300 Carya illinoinensis HOM05D003900 ORTHO05D005009 1.7e-12 79.7 226 28.3
CANSAT56G3111 Cannabis sativa HOM05D003900 ORTHO05D005009 2.2e-12 79.3 228 27.2
AT5G28370 Arabidopsis thaliana HOM05D003900 ORTHO05D005009 2.9e-12 79.0 228 28.9
AT5G28460 Arabidopsis thaliana HOM05D003900 ORTHO05D005009 2.9e-12 79.0 228 28.9
Duzib133G1046 Durio zibethinus HOM05D003900 ORTHO05D005009 3.7e-12 78.6 184 32.6
CiPaw.01G067500 Carya illinoinensis HOM05D003900 ORTHO05D005009 4.9e-12 78.2 235 26.8
AT3G61520 Arabidopsis thaliana HOM05D003900 ORTHO05D005009 6.4e-12 77.8 228 28.5
Migut.B01798 Erythranthe guttata HOM05D003900 ORTHO05D005009 6.4e-12 77.8 240 26.7
Oeu015216.1 Olea europaea HOM05D003900 ORTHO05D005009 1.1e-11 77.0 150 32.0
SEGI_27590 Sequoiadendron giganteum HOM05D003900 ORTHO05D005009 1.1e-11 77.0 111 36.9
Aa31LG1G27520 Aethionema arabicum HOM05D003900 ORTHO05D005009 1.9e-11 76.3 204 28.9
COL.COLO4_12777 Corchorus olitorius HOM05D003900 ORTHO05D005009 7.0e-11 74.3 178 34.3
MD01G1071400 Malus domestica HOM05D003900 ORTHO05D005009 2.0e-10 72.8 186 29.0
CiPaw.01G066800 Carya illinoinensis HOM05D003900 ORTHO05D005009 7.8e-10 70.9 226 26.5
CiPaw.01G067100 Carya illinoinensis HOM05D003900 ORTHO05D005009 7.8e-10 70.9 209 27.8
ClCG09G009150 Citrullus lanatus HOM05D003900 ORTHO05D005009 7.8e-10 70.9 182 30.8
CsaV3_7G025780 Cucumis sativus L. HOM05D003900 ORTHO05D005009 7.8e-10 70.9 179 31.3
SEGI_28461 Sequoiadendron giganteum HOM05D000004 ORTHO05D000002 7.8e-10 70.9 71 50.7
MELO3C029134.2 Cucumis melo HOM05D003900 ORTHO05D005009 1.0e-09 70.5 181 29.8
CiPaw.01G066600 Carya illinoinensis HOM05D003900 ORTHO05D005009 1.3e-09 70.1 235 26.0
Lsat_1_v5_gn_2_69281 Lactuca sativa HOM05D006218 ORTHO05D007338 1.7e-09 69.7 144 27.8
FAN06G2614 Fragaria x ananassa HOM05D003900 ORTHO05D005009 3.0e-09 68.9 230 24.8
A07p25540 Brassica napus HOM05D003900 ORTHO05D005009 3.9e-09 68.6 175 30.9
Eucgr.E00097 Eucalyptus grandis HOM05D003900 ORTHO05D005009 6.6e-09 67.8 208 27.4
Thhalv10022571m.g Eutrema salsugineum HOM05D003900 ORTHO05D005009 6.6e-09 67.8 203 26.6
FvH4_7g15360 Fragaria vesca HOM05D003900 ORTHO05D005009 6.6e-09 67.8 230 24.3
SEGI_03438 Sequoiadendron giganteum HOM05D003900 ORTHO05D005009 6.6e-09 67.8 90 41.1
MSTRG.1132 Avicennia marina HOM05D000001 ORTHO05D010176 8.6e-09 67.4 180 25.6
FAN06G4981 Fragaria x ananassa HOM05D003900 ORTHO05D005009 1.1e-08 67.0 225 24.9
BcaC08g45129 Brassica carinata HOM05D003900 ORTHO05D005009 1.9e-08 66.2 175 30.3
BcaB02g07375 Brassica carinata HOM05D003900 ORTHO05D005009 3.3e-08 65.5 174 28.2
C09p70390 Brassica napus HOM05D006596 ORTHO05D008497 3.3e-08 65.5 230 23.9
C06p27530 Brassica napus HOM05D003900 ORTHO05D005009 4.3e-08 65.1 175 30.3
Cc07_g18990 Coffea canephora HOM05D000162 ORTHO05D000090 4.3e-08 65.1 143 30.1
BolC6t37920H Brassica oleracea HOM05D003900 ORTHO05D005009 5.6e-08 64.7 175 29.7
CSS0013870 Camellia sinensis var. sinensis HOM05D000001 ORTHO05D010176 7.3e-08 64.3 180 24.4
SEGI_07919 Sequoiadendron giganteum HOM05D003900 ORTHO05D005009 7.3e-08 64.3 68 48.5
BraA07t30195Z Brassica rapa HOM05D003900 ORTHO05D005009 2.1e-07 62.8 175 29.1
SEGI_08205 Sequoiadendron giganteum HOM05D003900 ORTHO05D005009 2.1e-07 62.8 68 47.1
Ah.15g090370 Amaranthus hybridus HOM05D000001 ORTHO05D000003 3.6e-07 62.0 186 23.7
MELO3C009563.2 Cucumis melo HOM05D006596 ORTHO05D008497 4.7e-07 61.6 198 25.3
arahy.Tifrunner.gnm1.ann1.U9PBTF Arachis hypogaea HOM05D007202 ORTHO05D009125 6.2e-07 61.2 210 28.1
SEGI_22559 Sequoiadendron giganteum HOM05D003900 ORTHO05D005009 6.2e-07 61.2 124 37.9
arahy.Tifrunner.gnm1.ann1.EU7MKH Arachis hypogaea HOM05D007202 ORTHO05D009125 1.4e-06 60.1 210 28.1
Eucgr.G02512 Eucalyptus grandis HOM05D000001 ORTHO05D010176 1.4e-06 60.1 199 22.6
Dinv16630 Davidia involucrata HOM05D000001 ORTHO05D010176 2.3e-06 59.3 180 25.6
SEGI_06168 Sequoiadendron giganteum HOM05D028618 ORTHO05D005009 2.3e-06 59.3 155 31.6
Cc11_g13180 Coffea canephora HOM05D000001 ORTHO05D010176 3.1e-06 58.9 186 25.3
Os02g0468800 Oryza sativa ssp. japonica HOM05D000001 ORTHO05D000003 3.1e-06 58.9 172 25.0
COL.COLO4_22982 Corchorus olitorius HOM05D001598 ORTHO05D010176 4.0e-06 58.5 180 26.7
Cc00_g03850 Coffea canephora HOM05D000162 ORTHO05D000090 6.8e-06 57.8 164 27.4
ECA232G0714 Erigeron canadensis HOM05D004783 ORTHO05D005581 6.8e-06 57.8 196 24.0
RcHm_v2.0_Chr7g0219831 Rosa chinensis HOM05D006218 ORTHO05D007338 6.8e-06 57.8 142 26.8
Oeu021474.1 Olea europaea HOM05D000001 ORTHO05D010176 8.9e-06 57.4 180 26.1
QL03p008266 Quercus lobata HOM05D000162 ORTHO05D000090 8.9e-06 57.4 236 24.6
QL05p070010 Quercus lobata HOM05D000162 ORTHO05D000090 8.9e-06 57.4 236 24.6


User provided reference genes

Program Settings