Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_36701 Sequoiadendron giganteum HOM05D007003 ORTHO05D008499 1.1e-161 573.2 278 100.0
AagrBONN_evm.TU.Sc2ySwM_362.2079 Anthoceros agrestis HOM05D007003 ORTHO05D008499 3.0e-66 256.1 301 44.9
Pp3c4_4830 Physcomitrium patens HOM05D007003 ORTHO05D008499 9.4e-60 234.6 249 49.4
Actinidia36944 Actinidia chinensis HOM05D001273 ORTHO05D000023 2.9e-53 213.0 284 42.3
Mapoly0032s0131 Marchantia polymorpha HOM05D007003 ORTHO05D008499 2.9e-53 213.0 308 41.9
Cc05_g13800 Coffea canephora HOM05D007003 ORTHO05D008499 3.8e-53 212.6 291 42.3
PSO675G0160 Papaver somniferum HOM05D007003 ORTHO05D008499 1.4e-52 210.7 292 42.1
Oeu007586.1 Olea europaea HOM05D007003 ORTHO05D008499 3.9e-50 202.6 295 40.3
Migut.M01775 Erythranthe guttata HOM05D007003 ORTHO05D008499 4.4e-49 199.1 300 39.0
vmacro11731 Vaccinium macrocarpon HOM05D007003 ORTHO05D008499 4.4e-49 199.1 308 40.3
MELO3C018208.2 Cucumis melo HOM05D007003 ORTHO05D008499 7.4e-49 198.4 321 38.3
Nitab4.5_0003812g0060 Nicotiana tabacum HOM05D007003 ORTHO05D008499 7.4e-49 198.4 289 43.3
Lsat_1_v5_gn_5_6061 Lactuca sativa HOM05D007003 ORTHO05D008499 9.7e-49 198.0 289 41.9
Sopen07g032680 Solanum pennellii HOM05D007003 ORTHO05D008499 9.7e-49 198.0 324 37.7
DCAR_022556 Daucus carota HOM05D007003 ORTHO05D008499 1.3e-48 197.6 286 41.3
Gohir.A04G018400 Gossypium hirsutum HOM05D007003 ORTHO05D008499 1.3e-48 197.6 352 37.2
Gohir.D05G367600 Gossypium hirsutum HOM05D007003 ORTHO05D008499 1.7e-48 197.2 349 37.5
Sabra16G0288900 Salix brachista HOM05D007003 ORTHO05D008499 2.2e-48 196.8 325 41.5
Dinv40746 Davidia involucrata HOM05D007003 ORTHO05D008499 2.8e-48 196.4 360 36.1
Gorai.009G435200 Gossypium raimondii HOM05D007003 ORTHO05D008499 3.7e-48 196.1 345 37.7
PGSC0003DMG400042605 Solanum tuberosum HOM05D007003 ORTHO05D008499 4.8e-48 195.7 321 38.3
CsaV3_3G044430 Cucumis sativus L. HOM05D007003 ORTHO05D008499 1.8e-47 193.7 323 37.8
Nitab4.5_0001913g0010 Nicotiana tabacum HOM05D007003 ORTHO05D008499 2.4e-47 193.4 288 40.6
Potri.001G423900 Populus trichocarpa HOM05D007003 ORTHO05D008499 1.2e-46 191.0 325 41.2
Solyc07g064480.1 Solanum lycopersicum HOM05D007003 ORTHO05D008499 1.2e-46 191.0 313 37.7
SMO339G0013 Selaginella moellendorffii HOM05D007003 ORTHO05D008499 1.6e-46 190.7 278 38.5
Peaxi162Scf00964g00113 Petunia axillaris HOM05D007003 ORTHO05D008499 2.6e-46 189.9 317 38.2
TWI39G0907 Tripterygium wilfordii HOM05D007003 ORTHO05D008499 3.5e-46 189.5 279 42.3
A02p10000 Brassica napus HOM05D001404 ORTHO05D008499 5.9e-46 188.7 311 38.9
BraA02t06064Z Brassica rapa HOM05D001404 ORTHO05D002309 5.9e-46 188.7 311 38.9
Lj1P870T43 Lonicera japonica HOM05D007003 ORTHO05D008499 5.9e-46 188.7 280 40.7
Sed0008518 Sechium edule HOM05D007003 ORTHO05D008499 1.0e-45 188.0 301 38.5
C02p16580 Brassica napus HOM05D001404 ORTHO05D002309 1.3e-45 187.6 302 40.1
BolC2t07756H Brassica oleracea HOM05D001404 ORTHO05D002309 1.3e-45 187.6 302 39.7
Rhsim06G0216400 Rhododendron simsii HOM05D000561 ORTHO05D000514 2.2e-45 186.8 300 39.7
Manes.03G124400 Manihot esculenta HOM05D007003 ORTHO05D008499 2.9e-45 186.4 318 35.5
HPP92_012320 Vanilla planifolia HOM05D007003 ORTHO05D008499 1.1e-44 184.5 357 35.9
HPP92_012396 Vanilla planifolia HOM05D007003 ORTHO05D008499 1.1e-44 184.5 357 35.9
unitig_578.g16000 Utricularia gibba HOM05D007003 ORTHO05D008499 1.5e-44 184.1 311 37.0
ECA246G4814 Erigeron canadensis HOM05D001273 ORTHO05D000023 3.2e-44 183.0 308 37.7
BcaB05g22167 Brassica carinata HOM05D007003 ORTHO05D008499 4.2e-44 182.6 318 38.4
CSS0047719 Camellia sinensis var. sinensis HOM05D007003 ORTHO05D008499 4.2e-44 182.6 353 34.8
Eucgr.F00779 Eucalyptus grandis HOM05D007003 ORTHO05D008499 4.7e-43 179.1 359 34.5
GSVIVG01037627001 Vitis vinifera HOM05D007003 ORTHO05D008499 4.7e-43 179.1 338 34.9
CiPaw.12G128900 Carya illinoinensis HOM05D007003 ORTHO05D008499 8.0e-43 178.3 369 34.7
ATR0752G213 Amborella trichopoda HOM05D007003 ORTHO05D008499 5.2e-42 175.6 432 30.1
TAR627G0793 Trochodendron aralioides HOM05D007003 ORTHO05D008499 5.2e-42 175.6 401 31.2
EL10Ac4g07838 Beta vulgaris HOM05D007003 ORTHO05D008499 1.2e-41 174.5 376 34.0
Eucgr.F00790 Eucalyptus grandis HOM05D007003 ORTHO05D008499 1.5e-41 174.1 325 33.5
Thecc.07G042400 Theobroma cacao HOM05D007003 ORTHO05D008499 3.4e-41 172.9 433 30.9
CARHR268220 Cardamine hirsuta HOM05D007003 ORTHO05D008499 4.4e-41 172.6 348 32.8
PGR119G0071 Punica granatum HOM05D007003 ORTHO05D008499 7.5e-41 171.8 371 33.2
TPR.G22251 Trifolium pratense HOM05D007003 ORTHO05D008499 1.7e-40 170.6 318 35.8
Aa31LG3G10810 Aethionema arabicum HOM05D007003 ORTHO05D008499 2.8e-40 169.9 359 33.4
Aqoxy7G03837 Aquilegia oxysepala HOM05D007003 ORTHO05D008499 2.8e-40 169.9 389 32.6
Atru.chr2.3373 Acer truncatum HOM05D007003 ORTHO05D008499 3.7e-40 169.5 379 33.2
Psat2g013360 Pisum sativum HOM05D007003 ORTHO05D008499 3.7e-40 169.5 292 37.3
Medtr5g092280 Medicago truncatula HOM05D007003 ORTHO05D008499 1.1e-39 167.9 357 33.6
Eucgr.F00879 Eucalyptus grandis HOM05D007003 ORTHO05D008499 2.4e-39 166.8 305 36.1
VMungo0647G1301 Vigna mungo HOM05D007003 ORTHO05D008499 2.4e-39 166.8 376 33.0
AT5G54880 Arabidopsis thaliana HOM05D007003 ORTHO05D008499 4.1e-39 166.0 353 34.3
LjContig00272g0003747 Lotus japonicus HOM05D007003 ORTHO05D008499 4.1e-39 166.0 371 32.9
THA.LOC104817663 Tarenaya hassleriana HOM05D007003 ORTHO05D008499 5.3e-39 165.6 372 31.7
MBI02_g22102_MAGBIO Magnolia biondii HOM05D007003 ORTHO05D008499 9.1e-39 164.9 123 63.4
AUR62015746 Chenopodium quinoa HOM05D007003 ORTHO05D008499 2.0e-38 163.7 382 32.5
Ah.04g165820 Amaranthus hybridus HOM05D007003 ORTHO05D008499 3.5e-38 162.9 368 33.2
Thhalv10013739m.g Eutrema salsugineum HOM05D007003 ORTHO05D008499 3.5e-38 162.9 347 32.0
Ciclev10008359m.g Citrus clementina HOM05D007003 ORTHO05D008499 5.9e-38 162.2 394 32.7
Cfa020358 Carpinus fangiana HOM05D007003 ORTHO05D008499 1.3e-37 161.0 123 65.9
Eucgr.F00955 Eucalyptus grandis HOM05D007003 ORTHO05D008499 1.3e-37 161.0 337 32.9
AUR62020466 Chenopodium quinoa HOM05D007003 ORTHO05D008499 2.2e-37 160.2 382 32.7
Haze_09661 Corylus avellana HOM05D007003 ORTHO05D008499 2.2e-37 160.2 123 65.9
Glyma.14G024800 Glycine max HOM05D007003 ORTHO05D008499 2.2e-37 160.2 377 32.6
Actinidia05100 Actinidia chinensis HOM05D007003 ORTHO05D008499 2.9e-37 159.8 121 64.5
Cpa.g.sc97.17 Carica papaya HOM05D007003 ORTHO05D008499 2.9e-37 159.8 137 62.8
MD11G1220900 Malus domestica HOM05D001273 ORTHO05D008499 2.9e-37 159.8 420 30.2
Sp6g16850 Schrenkiella parvula HOM05D007003 ORTHO05D008499 2.9e-37 159.8 351 31.3
AL8G30340 Arabidopsis lyrata HOM05D007003 ORTHO05D008499 6.5e-37 158.7 353 32.3
MBI02_g19288_MAGBIO Magnolia biondii HOM05D007003 ORTHO05D008499 6.5e-37 158.7 123 61.8
SalBow8G3099 Salvia bowleyana HOM05D007003 ORTHO05D008499 8.5e-37 158.3 124 62.9
SGA_v2.0_scaffold424G51477 Striga asiatica HOM05D007003 ORTHO05D008499 8.5e-37 158.3 347 37.2
FvH4_3g22471 Fragaria vesca HOM05D007003 ORTHO05D008499 2.5e-36 156.8 120 65.0
Prupe.4G211300 Prunus persica HOM05D007003 ORTHO05D008499 4.2e-36 156.0 125 60.8
Cfa020360 Carpinus fangiana HOM05D007003 ORTHO05D008499 9.4e-36 154.8 122 64.8
FAN21G0080 Fragaria x ananassa HOM05D007003 ORTHO05D008499 1.2e-35 154.5 141 58.2
RcHm_v2.0_Chr5g0039141 Rosa chinensis HOM05D007003 ORTHO05D008499 1.2e-35 154.5 125 61.6
Nn1g03566 Nelumbo nucifera HOM05D007003 ORTHO05D008499 3.6e-35 152.9 161 52.2
Duzib213G0769 Durio zibethinus HOM05D007003 ORTHO05D008499 1.4e-34 151.0 124 62.9
CANSAT21G1622 Cannabis sativa HOM05D007003 ORTHO05D008499 2.3e-34 150.2 123 61.0
Lalb_Chr04g0248491 Lupinus albus HOM05D007003 ORTHO05D008499 3.0e-34 149.8 123 61.8
Phvul.008G266200 Phaseolus vulgaris HOM05D007003 ORTHO05D008499 1.2e-33 147.9 145 55.9
Eucgr.L01323 Eucalyptus grandis HOM05D007003 ORTHO05D008499 1.5e-33 147.5 313 31.0
BcaC03g14277 Brassica carinata HOM05D007003 ORTHO05D008499 5.7e-33 145.6 138 55.8
Os03g0568600 Oryza sativa ssp. japonica HOM05D007003 ORTHO05D008499 5.7e-33 145.6 148 50.7
Carub.0008s1518 Capsella rubella HOM05D007003 ORTHO05D008499 7.5e-33 145.2 124 55.6
Eucgr.F00922 Eucalyptus grandis HOM05D007003 ORTHO05D008499 7.5e-33 145.2 328 32.3
QL03p009927 Quercus lobata HOM05D007003 ORTHO05D008499 7.5e-33 145.2 119 61.3
QL08p011145 Quercus lobata HOM05D007003 ORTHO05D008499 7.5e-33 145.2 119 61.3
Zm00001eb219850 Zea mays HOM05D007003 ORTHO05D008499 7.5e-33 145.2 123 55.3
arahy.Tifrunner.gnm1.ann1.6A6QM9 Arachis hypogaea HOM05D007003 ORTHO05D008499 9.8e-33 144.8 126 59.5
arahy.Tifrunner.gnm1.ann1.422Z41 Arachis hypogaea HOM05D007003 ORTHO05D008499 1.3e-32 144.4 126 59.5
Ca_26481_v3 Cicer arietinum L. HOM05D007003 ORTHO05D008499 2.8e-32 143.3 124 59.7
Zm00001eb026290 Zea mays HOM05D007003 ORTHO05D008499 8.3e-32 141.7 123 53.7
CDE11G0477 Ceratophyllum demersum HOM05D007003 ORTHO05D008499 4.1e-31 139.4 218 39.0
TPR.G17434 Trifolium pratense HOM05D007003 ORTHO05D008499 1.5e-28 131.0 99 59.6
Eucgr.F00913 Eucalyptus grandis HOM05D007003 ORTHO05D008499 2.0e-25 120.6 105 53.3
Ca_03331_v3 Cicer arietinum L. HOM05D007003 ORTHO05D008499 2.4e-23 113.6 91 58.2
Sc16g0006140 Simmondsia chinensis HOM05D007003 ORTHO05D008499 5.4e-23 112.5 368 25.3
CAN.G337.122 Capsicum annuum HOM05D007003 ORTHO05D008499 2.3e-21 107.1 81 64.2
Eucgr.F00897 Eucalyptus grandis HOM05D007003 ORTHO05D008499 2.8e-19 100.1 295 29.5
Eucgr.F00928 Eucalyptus grandis HOM05D007003 ORTHO05D008499 4.7e-19 99.4 306 27.8
ClCG05G014280 Citrullus lanatus HOM05D007003 ORTHO05D008499 3.0e-13 80.1 55 63.6
MBI02_g22101_MAGBIO Magnolia biondii HOM05D007003 ORTHO05D002463 2.8e-11 73.6 86 41.9
MD03G1204100 Malus domestica HOM05D007003 ORTHO05D008499 6.2e-11 72.4 81 40.7
Actinidia05099 Actinidia chinensis HOM05D001273 ORTHO05D000023 8.0e-11 72.0 59 57.6
Peaxi162Scf00002g02715 Petunia axillaris HOM05D007273 ORTHO05D009230 8.0e-11 72.0 259 27.0
PSO384G4400 Papaver somniferum HOM05D007273 ORTHO05D009230 1.4e-10 71.2 258 26.0
Sopen02g032350 Solanum pennellii HOM05D007273 ORTHO05D009230 2.3e-10 70.5 256 27.3
PGSC0003DMG401001308 Solanum tuberosum HOM05D007273 ORTHO05D009230 2.3e-10 70.5 256 27.3
CAN.G417.4 Capsicum annuum HOM05D007273 ORTHO05D009230 3.1e-10 70.1 255 27.1
Solyc02g087600.3 Solanum lycopersicum HOM05D007273 ORTHO05D009230 6.8e-10 68.9 256 27.0
Nitab4.5_0000082g0140 Nicotiana tabacum HOM05D007273 ORTHO05D009230 8.9e-10 68.6 258 27.1
Cc06_g17580 Coffea canephora HOM05D007273 ORTHO05D009230 1.2e-09 68.2 266 26.3
Lsat_1_v5_gn_9_29100 Lactuca sativa HOM05D007273 ORTHO05D009230 1.5e-09 67.8 262 24.4
Dinv12487 Davidia involucrata HOM05D007273 ORTHO05D009230 2.6e-09 67.0 259 23.6
CAN.G337.121 Capsicum annuum HOM05D007003 ORTHO05D008499 3.4e-09 66.6 68 47.1
ECA247G0394 Erigeron canadensis HOM05D007273 ORTHO05D009230 3.4e-09 66.6 261 24.9
Sc25g0005300 Simmondsia chinensis HOM05D007273 ORTHO05D009230 1.7e-08 64.3 257 24.5
TPR.G1180 Trifolium pratense HOM05D007003 ORTHO05D008499 1.7e-08 64.3 86 36.0
SalBow6G5536 Salvia bowleyana HOM05D007273 ORTHO05D009230 2.2e-08 63.9 280 23.6
Nn2g15217 Nelumbo nucifera HOM05D007273 ORTHO05D009230 2.9e-08 63.5 269 24.5
PSO339G1789 Papaver somniferum HOM05D007273 ORTHO05D009230 2.9e-08 63.5 258 25.6
Cfa016813 Carpinus fangiana HOM05D007273 ORTHO05D009230 6.4e-08 62.4 277 23.8
DCAR_003245 Daucus carota HOM05D007273 ORTHO05D009230 8.3e-08 62.0 263 25.9
MCO14G270 Micromonas commoda HOM05D007003 ORTHO05D008499 8.3e-08 62.0 304 26.3
Mapoly0023s0152 Marchantia polymorpha HOM05D007273 ORTHO05D009230 1.4e-07 61.2 282 28.4
QL07p000584 Quercus lobata HOM05D007273 ORTHO05D009230 5.4e-07 59.3 259 25.9
Migut.J01756 Erythranthe guttata HOM05D007273 ORTHO05D009230 7.1e-07 58.9 257 25.7
Nitab4.5_0010316g0010 Nicotiana tabacum HOM05D007273 ORTHO05D009230 9.2e-07 58.5 257 24.9
Actinidia39224 Actinidia chinensis HOM05D007273 ORTHO05D009230 2.7e-06 57.0 251 24.3
HanXRQChr05g0128781 Helianthus annuus HOM05D007273 ORTHO05D009230 2.7e-06 57.0 266 25.9
AUR62026041 Chenopodium quinoa HOM05D007273 ORTHO05D009230 6.0e-06 55.8 254 26.0
Haze_19853 Corylus avellana HOM05D007273 ORTHO05D009230 6.0e-06 55.8 277 23.1


User provided reference genes

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