Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_36613 Sequoiadendron giganteum HOM05D003749 ORTHO05D004421 4.2e-95 351.3 169 100.0
SEGI_14095 Sequoiadendron giganteum HOM05D003749 ORTHO05D004421 2.7e-70 268.9 137 94.2
Atru.chr2.1608 Acer truncatum HOM05D003749 ORTHO05D004421 7.5e-52 207.6 137 70.1
Nn4g23700 Nelumbo nucifera HOM05D003749 ORTHO05D004421 4.8e-51 204.9 135 71.1
Hund15121 Selenicereus undatus HOM05D003749 ORTHO05D004421 4.8e-51 204.9 134 72.4
Atru.chr8.949 Acer truncatum HOM05D003749 ORTHO05D004421 8.3e-51 204.1 135 70.4
PGR042G1179 Punica granatum HOM05D003749 ORTHO05D004421 1.1e-50 203.8 135 69.6
TAR629G3198 Trochodendron aralioides HOM05D003749 ORTHO05D004421 1.1e-50 203.8 135 69.6
CANSAT64G0170 Cannabis sativa HOM05D003749 ORTHO05D004421 1.4e-50 203.4 135 69.6
Nn3g17694 Nelumbo nucifera HOM05D003749 ORTHO05D004421 1.8e-50 203.0 135 70.4
MELO3C022086.2 Cucumis melo HOM05D003749 ORTHO05D004421 4.1e-50 201.8 136 69.1
CsaV3_5G039100 Cucumis sativus L. HOM05D003749 ORTHO05D004421 5.3e-50 201.4 136 68.4
CiPaw.03G059000 Carya illinoinensis HOM05D003749 ORTHO05D004421 7.0e-50 201.1 135 68.1
ClCG11G005320 Citrullus lanatus HOM05D003749 ORTHO05D004421 9.1e-50 200.7 136 68.4
CiPaw.04G040000 Carya illinoinensis HOM05D003749 ORTHO05D004421 2.7e-49 199.1 135 67.4
CDE01G0232 Ceratophyllum demersum HOM05D003749 ORTHO05D004421 2.7e-49 199.1 135 71.1
Sed0006006 Sechium edule HOM05D003749 ORTHO05D004421 3.5e-49 198.7 135 67.4
Gorai.004G054900 Gossypium raimondii HOM05D003749 ORTHO05D004421 4.5e-49 198.4 135 71.1
arahy.Tifrunner.gnm1.ann1.G4J1DJ Arachis hypogaea HOM05D003749 ORTHO05D004421 7.7e-49 197.6 136 68.4
Cfa007953 Carpinus fangiana HOM05D003749 ORTHO05D004421 7.7e-49 197.6 135 66.7
Peaxi162Scf00479g00114 Petunia axillaris HOM05D003749 ORTHO05D004421 1.0e-48 197.2 135 66.7
Dinv33926 Davidia involucrata HOM05D003749 ORTHO05D004421 1.3e-48 196.8 135 68.9
LjContig00222g0005460 Lotus japonicus HOM05D003749 ORTHO05D004421 1.3e-48 196.8 136 67.6
ATR0053G008 Amborella trichopoda HOM05D003749 ORTHO05D004421 1.7e-48 196.4 134 67.2
Duzib138G1497 Durio zibethinus HOM05D003749 ORTHO05D004421 1.7e-48 196.4 135 71.1
arahy.Tifrunner.gnm1.ann1.M5A7E6 Arachis hypogaea HOM05D003749 ORTHO05D004421 2.9e-48 195.7 135 68.1
EL10Ac5g11727 Beta vulgaris HOM05D003749 ORTHO05D004421 2.9e-48 195.7 136 69.1
Gohir.A08G044800 Gossypium hirsutum HOM05D003749 ORTHO05D004421 3.8e-48 195.3 135 70.4
CDE02G3838 Ceratophyllum demersum HOM05D003749 ORTHO05D004421 5.0e-48 194.9 135 68.9
Gohir.D08G054500 Gossypium hirsutum HOM05D003749 ORTHO05D004421 5.0e-48 194.9 135 69.6
MBI10_g08551_MAGBIO Magnolia biondii HOM05D003749 ORTHO05D004421 5.0e-48 194.9 135 70.4
TAR374G0647 Trochodendron aralioides HOM05D003749 ORTHO05D004421 6.5e-48 194.5 135 67.4
Hma1.2p1_0550F.1_g177200 Hydrangea macrophylla HOM05D003749 ORTHO05D004421 8.5e-48 194.1 135 66.7
Hma1.2p1_0550F.1_g177205 Hydrangea macrophylla HOM05D003749 ORTHO05D004421 8.5e-48 194.1 135 66.7
Nitab4.5_0003461g0020 Nicotiana tabacum HOM05D003749 ORTHO05D004421 8.5e-48 194.1 136 66.2
Manes.01G107800 Manihot esculenta HOM05D003749 ORTHO05D004421 1.1e-47 193.7 135 66.7
Duzib268G0352 Durio zibethinus HOM05D003749 ORTHO05D004421 1.5e-47 193.4 135 68.9
MBI16_g33829_MAGBIO Magnolia biondii HOM05D003749 ORTHO05D004421 1.5e-47 193.4 135 68.1
Peaxi162Scf01056g00243 Petunia axillaris HOM05D003749 ORTHO05D004421 2.5e-47 192.6 135 63.7
Prupe.3G240300 Prunus persica HOM05D003749 ORTHO05D004421 2.5e-47 192.6 135 67.4
QL02p052938 Quercus lobata HOM05D003749 ORTHO05D004421 2.5e-47 192.6 135 65.9
Sopen02g034510 Solanum pennellii HOM05D003749 ORTHO05D004421 2.5e-47 192.6 135 64.4
THA.LOC104805552 Tarenaya hassleriana HOM05D003749 ORTHO05D004421 2.5e-47 192.6 135 65.9
Cpa.g.sc179.30 Carica papaya HOM05D003749 ORTHO05D004421 3.2e-47 192.2 135 65.2
MBI16_g46925_MAGBIO Magnolia biondii HOM05D003749 ORTHO05D004421 3.2e-47 192.2 134 68.7
Solyc02g089820.4 Solanum lycopersicum HOM05D003749 ORTHO05D004421 3.2e-47 192.2 135 64.4
PGSC0003DMG400010046 Solanum tuberosum HOM05D003749 ORTHO05D004421 3.2e-47 192.2 135 64.4
Ca_24455_v3 Cicer arietinum L. HOM05D003749 ORTHO05D004421 4.2e-47 191.8 136 65.4
Thecc.04G138900 Theobroma cacao HOM05D003749 ORTHO05D004421 4.2e-47 191.8 135 68.1
CAN.G497.5 Capsicum annuum HOM05D003749 ORTHO05D004421 7.2e-47 191.0 135 64.4
MD17G1073500 Malus domestica HOM05D003749 ORTHO05D004421 9.4e-47 190.7 135 66.7
Migut.K00859 Erythranthe guttata HOM05D003749 ORTHO05D004421 1.2e-46 190.3 139 66.9
THA.LOC104823870 Tarenaya hassleriana HOM05D003749 ORTHO05D004421 1.6e-46 189.9 135 65.2
GSVIVG01036450001 Vitis vinifera HOM05D003749 ORTHO05D004421 2.1e-46 189.5 135 65.2
MD09G1083200 Malus domestica HOM05D003749 ORTHO05D004421 4.7e-46 188.3 135 65.9
A07p32660 Brassica napus HOM05D003749 ORTHO05D004421 6.1e-46 188.0 135 64.4
C06p38830 Brassica napus HOM05D003749 ORTHO05D004421 6.1e-46 188.0 135 64.4
BolC6t38976H Brassica oleracea HOM05D003749 ORTHO05D004421 6.1e-46 188.0 135 64.4
BraA07t30890Z Brassica rapa HOM05D003749 ORTHO05D004421 6.1e-46 188.0 135 64.4
Nitab4.5_0009272g0030 Nicotiana tabacum HOM05D003749 ORTHO05D004421 6.1e-46 188.0 135 62.2
CARHR059720 Cardamine hirsuta HOM05D003749 ORTHO05D004421 1.0e-45 187.2 135 64.4
AUR62042069 Chenopodium quinoa HOM05D003749 ORTHO05D004421 1.0e-45 187.2 134 67.9
AUR62044332 Chenopodium quinoa HOM05D003749 ORTHO05D004421 1.0e-45 187.2 134 67.9
Manes.02G066100 Manihot esculenta HOM05D003749 ORTHO05D004421 1.0e-45 187.2 135 63.7
CARHR214090 Cardamine hirsuta HOM05D003749 ORTHO05D004421 1.4e-45 186.8 135 64.4
AUR62040335 Chenopodium quinoa HOM05D003749 ORTHO05D004421 1.4e-45 186.8 134 67.9
Lalb_Chr09g0320331 Lupinus albus HOM05D003749 ORTHO05D004421 1.4e-45 186.8 135 63.0
CSS0022784 Camellia sinensis var. sinensis HOM05D003749 ORTHO05D004421 2.3e-45 186.0 138 62.3
CSS0014522 Camellia sinensis var. sinensis HOM05D003749 ORTHO05D004421 3.0e-45 185.7 138 62.3
Sp5g22180 Schrenkiella parvula HOM05D003749 ORTHO05D004421 3.0e-45 185.7 135 64.4
Actinidia18121 Actinidia chinensis HOM05D003749 ORTHO05D004421 4.0e-45 185.3 138 61.6
Aa31LG2G3620 Aethionema arabicum HOM05D003749 ORTHO05D004421 5.2e-45 184.9 135 63.7
Ah.02g115680 Amaranthus hybridus HOM05D003749 ORTHO05D004421 5.2e-45 184.9 135 67.4
BcaB03g15341 Brassica carinata HOM05D003749 ORTHO05D004421 5.2e-45 184.9 135 63.7
Thhalv10027984m.g Eutrema salsugineum HOM05D003749 ORTHO05D004421 5.2e-45 184.9 135 63.0
SalBow1G5732 Salvia bowleyana HOM05D003749 ORTHO05D004421 5.2e-45 184.9 129 65.1
FAN14G1502 Fragaria x ananassa HOM05D003749 ORTHO05D004421 6.8e-45 184.5 134 63.4
PSO782G4209 Papaver somniferum HOM05D003749 ORTHO05D004421 6.8e-45 184.5 136 63.2
Carub.0002s1352 Capsella rubella HOM05D003749 ORTHO05D004421 8.8e-45 184.1 135 63.7
FAN02G1560 Fragaria x ananassa HOM05D003749 ORTHO05D004421 8.8e-45 184.1 134 64.2
TWI38G0650 Tripterygium wilfordii HOM05D003749 ORTHO05D004421 8.8e-45 184.1 135 62.2
BcaC03g14820 Brassica carinata HOM05D003749 ORTHO05D004421 1.2e-44 183.7 135 63.7
A02p14100 Brassica napus HOM05D003749 ORTHO05D004421 1.2e-44 183.7 135 63.7
BolC2t08424H Brassica oleracea HOM05D003749 ORTHO05D004421 1.2e-44 183.7 135 63.7
AT1G67250 Arabidopsis thaliana HOM05D003749 ORTHO05D004421 1.5e-44 183.3 135 63.0
AT5G38650 Arabidopsis thaliana HOM05D003749 ORTHO05D004421 1.5e-44 183.3 135 63.0
AT5G38660 Arabidopsis thaliana HOM05D006042 ORTHO05D007658 1.5e-44 183.3 135 63.0
BolC6t39133H Brassica oleracea HOM05D003749 ORTHO05D004421 1.5e-44 183.3 135 63.7
Ciclev10013059m.g Citrus clementina HOM05D003749 ORTHO05D004421 2.0e-44 183.0 135 62.2
PSO063G3423 Papaver somniferum HOM05D003749 ORTHO05D004421 2.0e-44 183.0 136 63.2
MSTRG.3390 Avicennia marina HOM05D003749 ORTHO05D004421 3.4e-44 182.2 129 65.9
BcaB03g15214 Brassica carinata HOM05D003749 ORTHO05D004421 3.4e-44 182.2 135 62.2
A07p33850 Brassica napus HOM05D003749 ORTHO05D004421 3.4e-44 182.2 135 63.0
BraA07t31011Z Brassica rapa HOM05D003749 ORTHO05D004421 3.4e-44 182.2 135 63.0
FAN05G0572 Fragaria x ananassa HOM05D003749 ORTHO05D004421 3.4e-44 182.2 134 63.4
Lalb_Chr16g0376641 Lupinus albus HOM05D003749 ORTHO05D004421 3.4e-44 182.2 135 62.2
SalBow6G0369 Salvia bowleyana HOM05D003749 ORTHO05D004421 3.4e-44 182.2 129 64.3
Sc10g0001340 Simmondsia chinensis HOM05D003749 ORTHO05D004421 3.4e-44 182.2 134 63.4
Carub.0007s3721 Capsella rubella HOM05D003749 ORTHO05D004421 4.4e-44 181.8 135 63.0
HanXRQChr14g0448851 Helianthus annuus HOM05D003749 ORTHO05D004421 4.4e-44 181.8 135 64.4
BcaB05g24251 Brassica carinata HOM05D003749 ORTHO05D004421 5.7e-44 181.4 135 63.0
BcaC08g46151 Brassica carinata HOM05D003749 ORTHO05D004421 5.7e-44 181.4 135 63.0
C02p22710 Brassica napus HOM05D003749 ORTHO05D004421 5.7e-44 181.4 135 63.0
C06p43020 Brassica napus HOM05D003749 ORTHO05D004421 5.7e-44 181.4 135 63.0
BraA02t06473Z Brassica rapa HOM05D003749 ORTHO05D004421 5.7e-44 181.4 135 63.0
Thhalv10019303m.g Eutrema salsugineum HOM05D003749 ORTHO05D004421 5.7e-44 181.4 135 65.2
RcHm_v2.0_Chr2g0163251 Rosa chinensis HOM05D003749 ORTHO05D004421 5.7e-44 181.4 134 61.9
HPP92_000270 Vanilla planifolia HOM05D003749 ORTHO05D004421 5.7e-44 181.4 133 65.4
TWI39G0894 Tripterygium wilfordii HOM05D003749 ORTHO05D004421 9.8e-44 180.6 135 60.0
Potri.017G111900 Populus trichocarpa HOM05D003749 ORTHO05D004421 1.7e-43 179.9 134 61.9
COL.COLO4_16198 Corchorus olitorius HOM05D003749 ORTHO05D004421 2.8e-43 179.1 136 63.2
Medtr4g077240 Medicago truncatula HOM05D003749 ORTHO05D004421 2.8e-43 179.1 135 62.2
TPR.G29477 Trifolium pratense HOM05D003749 ORTHO05D004421 3.7e-43 178.7 135 61.5
HanXRQChr12g0385611 Helianthus annuus HOM05D003749 ORTHO05D004421 4.8e-43 178.3 136 64.7
ECA238G2303 Erigeron canadensis HOM05D003749 ORTHO05D004421 6.3e-43 177.9 135 63.0
Pp3c23_15440 Physcomitrium patens HOM05D003749 ORTHO05D004421 6.3e-43 177.9 133 60.2
FvH4_6g45420 Fragaria vesca HOM05D003749 ORTHO05D004421 8.3e-43 177.6 130 63.1
Pp3c20_8310 Physcomitrium patens HOM05D003749 ORTHO05D004421 8.3e-43 177.6 133 60.9
Rhsim10G0064100 Rhododendron simsii HOM05D003749 ORTHO05D004421 1.4e-42 176.8 156 55.1
Migut.H00529 Erythranthe guttata HOM05D003749 ORTHO05D004421 3.1e-42 175.6 125 65.6
Aqoxy3G03894 Aquilegia oxysepala HOM05D003749 ORTHO05D004421 7.0e-42 174.5 137 65.0
Potri.006G249600 Populus trichocarpa HOM05D003749 ORTHO05D004421 7.0e-42 174.5 134 61.9
Cc07_g05070 Coffea canephora HOM05D003749 ORTHO05D004421 9.1e-42 174.1 125 64.8
unitig_32.g10762 Utricularia gibba HOM05D003749 ORTHO05D004421 1.6e-41 173.3 129 63.6
VMungo1127G1849 Vigna mungo HOM05D003749 ORTHO05D004421 1.6e-41 173.3 134 61.2
Lsat_1_v5_gn_2_90800 Lactuca sativa HOM05D003749 ORTHO05D004421 2.0e-41 172.9 132 62.9
SGA_v2.0_scaffold62G21545 Striga asiatica HOM05D003749 ORTHO05D004421 2.0e-41 172.9 144 57.6
Glyma.12G019300 Glycine max HOM05D003749 ORTHO05D004421 3.5e-41 172.2 135 60.7
Lj3g0004703 Lotus japonicus HOM05D003749 ORTHO05D004421 3.5e-41 172.2 135 60.7
Ca_04934_v3 Cicer arietinum L. HOM05D003749 ORTHO05D004421 4.5e-41 171.8 135 60.0
unitig_748.g8406 Utricularia gibba HOM05D003749 ORTHO05D004421 4.5e-41 171.8 129 62.8
Glyma.11G093000 Glycine max HOM05D003749 ORTHO05D004421 5.9e-41 171.4 135 60.0
Lalb_Chr19g0139861 Lupinus albus HOM05D003749 ORTHO05D004421 5.9e-41 171.4 136 61.8
Haze_14116 Corylus avellana HOM05D003749 ORTHO05D004421 7.7e-41 171.0 186 48.9
Haze_14122 Corylus avellana HOM05D003749 ORTHO05D004421 7.7e-41 171.0 186 48.9
Phvul.011G021700 Phaseolus vulgaris HOM05D003749 ORTHO05D004421 2.3e-40 169.5 135 59.3
Nitab4.5_0002108g0070 Nicotiana tabacum HOM05D003749 ORTHO05D004421 3.8e-40 168.7 163 50.3
Mapoly0073s0035 Marchantia polymorpha HOM05D003749 ORTHO05D004421 1.9e-39 166.4 134 57.5
AL2G25760 Arabidopsis lyrata HOM05D003749 ORTHO05D004421 5.5e-39 164.9 184 47.8
AagrBONN_evm.TU.Sc2ySwM_344.3948 Anthoceros agrestis HOM05D003749 ORTHO05D004421 9.5e-39 164.1 134 58.2
Nitab4.5_0004487g0040 Nicotiana tabacum HOM05D003749 ORTHO05D004421 6.8e-37 157.9 168 50.6
Atru.chr2.1922 Acer truncatum HOM05D003749 ORTHO05D004421 1.5e-36 156.8 110 67.3
Zm00001eb258090 Zea mays HOM05D003749 ORTHO05D004421 1.3e-35 153.7 135 55.6
Os02g0800100 Oryza sativa ssp. japonica HOM05D003749 ORTHO05D004421 1.7e-35 153.3 131 58.0
Psat7g171120 Pisum sativum HOM05D003749 ORTHO05D004421 2.8e-35 152.5 137 54.0
Sp7g03260 Schrenkiella parvula HOM05D003749 ORTHO05D004421 3.7e-35 152.1 135 55.6
TWI38G0800 Tripterygium wilfordii HOM05D003749 ORTHO05D004421 8.3e-35 151.0 136 52.2
Os03g0583700 Oryza sativa ssp. japonica HOM05D003749 ORTHO05D004421 2.0e-33 146.4 131 55.0
Os09g0314900 Oryza sativa ssp. japonica HOM05D003749 ORTHO05D004421 2.7e-33 146.0 131 55.0
SMO119G0338 Selaginella moellendorffii HOM05D003749 ORTHO05D004421 1.0e-32 144.1 125 56.0
Dinv34854 Davidia involucrata HOM05D003749 ORTHO05D004421 2.9e-32 142.5 102 67.6
CBR_g34012 Chara braunii HOM05D003749 ORTHO05D004421 3.9e-32 142.1 125 53.6
Medtr5g008020 Medicago truncatula HOM05D003749 ORTHO05D004421 8.6e-32 141.0 136 51.5
CSS0049372 Camellia sinensis var. sinensis HOM05D003749 ORTHO05D004421 3.7e-27 125.6 137 48.9
vmacro05576 Vaccinium macrocarpon HOM05D003749 ORTHO05D004421 3.9e-24 115.5 282 29.1
ATR0693G122 Amborella trichopoda HOM05D003749 ORTHO05D004421 2.8e-22 109.4 72 69.4
Cre16.g665000 Chlamydomonas reinhardtii HOM05D003749 ORTHO05D004421 4.0e-21 105.5 117 46.2
CAN.G512.5 Capsicum annuum HOM05D003749 ORTHO05D004421 4.4e-20 102.1 66 68.2
MCO04G514 Micromonas commoda HOM05D003749 ORTHO05D004421 5.8e-20 101.7 122 45.9
Os02g0800500 Oryza sativa ssp. japonica HOM05D003749 ORTHO05D004421 2.2e-19 99.8 99 51.5
Os02g0801200 Oryza sativa ssp. japonica HOM05D003749 ORTHO05D004421 2.2e-19 99.8 99 51.5
Os02g0801300 Oryza sativa ssp. japonica HOM05D003749 ORTHO05D004421 2.2e-19 99.8 99 51.5
DCAR_007518 Daucus carota HOM05D003749 ORTHO05D004421 4.6e-17 92.0 66 65.2
unitig_748.g8606 Utricularia gibba HOM05D000345 ORTHO05D000215 1.1e-15 87.4 86 52.3
Oeu027946.1 Olea europaea HOM05D003749 ORTHO05D004421 3.3e-15 85.9 74 55.4
Sabra11G0068300 Salix brachista HOM05D000487 ORTHO05D004421 4.3e-15 85.5 59 67.8
Sabra16G0120200 Salix brachista HOM05D000487 ORTHO05D004421 4.3e-15 85.5 59 67.8
SalBow1G0221 Salvia bowleyana HOM05D003749 ORTHO05D004421 5.6e-15 85.1 65 61.5
Oeu049326.1 Olea europaea HOM05D003749 ORTHO05D004421 1.6e-14 83.6 75 54.7
MSTRG.15417 Avicennia marina HOM05D003749 ORTHO05D004421 5.8e-12 75.1 61 52.5
BcaC02g12028 Brassica carinata HOM05D003749 ORTHO05D004421 3.7e-11 72.4 109 40.4
C04p08860 Brassica napus HOM05D003749 ORTHO05D004421 7.8e-09 64.7 106 40.6
Oeu049327.1 Olea europaea HOM05D003749 ORTHO05D004421 1.7e-08 63.5 40 65.0
PRCOL_00003426 Prasinoderma coloniale HOM05D003749 ORTHO05D004421 1.7e-08 63.5 124 37.1
MD05G1212600 Malus domestica HOM05D003749 ORTHO05D004421 6.6e-08 61.6 62 50.0
BolC1t05893H Brassica oleracea HOM05D003749 ORTHO05D016434 9.5e-07 57.8 103 39.8
SEGI_03523 Sequoiadendron giganteum HOM05D000215 ORTHO05D001676 9.5e-07 57.8 36 77.8
Gohir.D12G069201 Gossypium hirsutum HOM05D000140 ORTHO05D008077 2.1e-06 56.6 33 72.7
Gorai.008G075700 Gossypium raimondii HOM05D000140 ORTHO05D008077 2.8e-06 56.2 33 72.7
MD01G1088800 Malus domestica HOM05D003749 ORTHO05D004421 4.7e-06 55.5 60 46.7


User provided reference genes

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