Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_36558 Sequoiadendron giganteum HOM05D005262 ORTHO05D006590 9.0e-66 253.4 128 100.0
SEGI_39727 Sequoiadendron giganteum HOM05D005262 ORTHO05D006590 8.4e-64 246.9 128 97.7
SEGI_23137 Sequoiadendron giganteum HOM05D005262 ORTHO05D006590 7.9e-62 240.4 143 88.1
SEGI_29332 Sequoiadendron giganteum HOM05D005262 ORTHO05D006590 3.2e-39 165.2 128 75.0
SEGI_18406 Sequoiadendron giganteum HOM05D005262 ORTHO05D006590 1.5e-36 156.4 128 71.1
CSS0022308 Camellia sinensis var. sinensis HOM05D005262 ORTHO05D006590 6.7e-21 104.4 76 65.8
CiPaw.05G130500 Carya illinoinensis HOM05D005262 ORTHO05D006590 2.6e-20 102.4 76 63.2
HanXRQChr15g0476911 Helianthus annuus HOM05D005262 ORTHO05D006590 3.3e-20 102.1 79 63.3
Nitab4.5_0001147g0090 Nicotiana tabacum HOM05D005262 ORTHO05D006590 5.7e-20 101.3 76 63.2
QL07p005102 Quercus lobata HOM05D005262 ORTHO05D006590 7.4e-20 100.9 76 64.5
Solyc07g017410.3 Solanum lycopersicum HOM05D005262 ORTHO05D006590 7.4e-20 100.9 76 64.5
Sopen07g006120 Solanum pennellii HOM05D005262 ORTHO05D006590 7.4e-20 100.9 76 64.5
PGSC0003DMG400009555 Solanum tuberosum HOM05D005262 ORTHO05D006590 7.4e-20 100.9 76 64.5
GSVIVG01005152001 Vitis vinifera HOM05D005262 ORTHO05D006590 7.4e-20 100.9 76 64.5
GSVIVG01012217001 Vitis vinifera HOM05D005262 ORTHO05D006590 7.4e-20 100.9 76 65.8
Nitab4.5_0005903g0020 Nicotiana tabacum HOM05D005262 ORTHO05D006590 1.3e-19 100.1 76 61.8
Sc04g0007950 Simmondsia chinensis HOM05D005262 ORTHO05D006590 1.3e-19 100.1 76 61.8
Cfa008943 Carpinus fangiana HOM05D005262 ORTHO05D006590 1.7e-19 99.8 76 61.8
Dinv34128 Davidia involucrata HOM05D005262 ORTHO05D006590 1.7e-19 99.8 81 63.0
Oeu054855.1 Olea europaea HOM05D005262 ORTHO05D006590 1.7e-19 99.8 76 60.5
QL03p069106 Quercus lobata HOM05D005262 ORTHO05D006590 1.7e-19 99.8 76 63.2
QL93p1999_0168 Quercus lobata HOM05D005262 ORTHO05D006590 1.7e-19 99.8 76 63.2
Hund04408 Selenicereus undatus HOM05D005262 ORTHO05D006590 2.2e-19 99.4 76 63.2
Aqoxy2G00811 Aquilegia oxysepala HOM05D005262 ORTHO05D006590 2.8e-19 99.0 78 64.1
Haze_11969 Corylus avellana HOM05D001063 ORTHO05D000986 2.8e-19 99.0 76 60.5
Os12g0209100 Oryza sativa ssp. japonica HOM05D005262 ORTHO05D006590 2.8e-19 99.0 80 63.8
Lsat_1_v5_gn_3_51960 Lactuca sativa HOM05D005262 ORTHO05D006590 3.7e-19 98.6 79 60.8
TAR496G0001 Trochodendron aralioides HOM05D005262 ORTHO05D006590 4.8e-19 98.2 80 58.8
TAR629G1254 Trochodendron aralioides HOM05D005262 ORTHO05D006590 4.8e-19 98.2 80 58.8
Cpa.g.sc57.36 Carica papaya HOM05D005262 ORTHO05D006590 6.3e-19 97.8 76 61.8
CDE02G1435 Ceratophyllum demersum HOM05D005262 ORTHO05D006590 6.3e-19 97.8 74 63.5
Duzib114G0995 Durio zibethinus HOM05D005262 ORTHO05D006590 1.1e-18 97.1 73 63.0
TAR365G0711 Trochodendron aralioides HOM05D005262 ORTHO05D006590 1.4e-18 96.7 80 57.5
Sed0024226 Sechium edule HOM05D005262 ORTHO05D006590 1.8e-18 96.3 75 61.3
unitig_749.g14151 Utricularia gibba HOM05D005262 ORTHO05D006590 2.4e-18 95.9 76 61.8
Hma1.2p1_1954F.1_g308920 Hydrangea macrophylla HOM05D005262 ORTHO05D006590 3.1e-18 95.5 116 46.6
Lj7A251G27 Lonicera japonica HOM05D005262 ORTHO05D006590 4.1e-18 95.1 76 60.5
Lj8C444T0 Lonicera japonica HOM05D005262 ORTHO05D006590 4.1e-18 95.1 76 60.5
Peaxi162Scf00320g00123 Petunia axillaris HOM05D005262 ORTHO05D006590 4.1e-18 95.1 76 57.9
TWI23G0893 Tripterygium wilfordii HOM05D005262 ORTHO05D006590 4.1e-18 95.1 74 60.8
TWI59G0657 Tripterygium wilfordii HOM05D005262 ORTHO05D006590 4.1e-18 95.1 76 60.5
vmacro10351 Vaccinium macrocarpon HOM05D005262 ORTHO05D006590 4.1e-18 95.1 76 60.5
DCAR_013139 Daucus carota HOM05D005262 ORTHO05D006590 7.0e-18 94.4 76 60.5
HPP92_008614 Vanilla planifolia HOM05D005262 ORTHO05D006590 7.0e-18 94.4 76 61.8
CAN.G293.9 Capsicum annuum HOM05D005262 ORTHO05D006590 9.1e-18 94.0 76 59.2
ClCG00G005120 Citrullus lanatus HOM05D005262 ORTHO05D006590 9.1e-18 94.0 75 58.7
ClCG05G024080 Citrullus lanatus HOM05D005262 ORTHO05D006590 9.1e-18 94.0 75 58.7
ATR0810G029 Amborella trichopoda HOM05D005262 ORTHO05D006590 1.2e-17 93.6 75 62.7
Cc00_g16620 Coffea canephora HOM05D005262 ORTHO05D006590 1.2e-17 93.6 76 56.6
Lj8C474T0 Lonicera japonica HOM05D005262 ORTHO05D006590 1.2e-17 93.6 76 59.2
PSO063G7616 Papaver somniferum HOM05D005262 ORTHO05D006590 1.2e-17 93.6 78 57.7
PSO832G0345 Papaver somniferum HOM05D005262 ORTHO05D006590 1.2e-17 93.6 78 57.7
CANSAT80G0446 Cannabis sativa HOM05D005262 ORTHO05D006590 1.6e-17 93.2 68 61.8
Ca_02973_v3 Cicer arietinum L. HOM05D005262 ORTHO05D006590 1.6e-17 93.2 71 64.8
MELO3C012117.2 Cucumis melo HOM05D005262 ORTHO05D006590 1.6e-17 93.2 77 55.8
ECA246G3166 Erigeron canadensis HOM05D006399 ORTHO05D007988 1.6e-17 93.2 79 57.0
Gohir.D04G003700 Gossypium hirsutum HOM05D005262 ORTHO05D006590 1.6e-17 93.2 71 63.4
Gorai.012G004900 Gossypium raimondii HOM05D005262 ORTHO05D006590 1.6e-17 93.2 71 63.4
HanXRQChr17g0545311 Helianthus annuus HOM05D005262 ORTHO05D006590 2.0e-17 92.8 79 58.2
Lj7C254T2 Lonicera japonica HOM05D005262 ORTHO05D006590 2.0e-17 92.8 82 57.3
TPR.G4647 Trifolium pratense HOM05D005262 ORTHO05D006590 2.0e-17 92.8 73 63.0
Migut.O00263 Erythranthe guttata HOM05D005262 ORTHO05D006590 4.5e-17 91.7 76 56.6
Glyma.01G052200 Glycine max HOM05D005262 ORTHO05D006590 4.5e-17 91.7 76 61.8
Gohir.A10G054500 Gossypium hirsutum HOM05D005262 ORTHO05D006590 7.7e-17 90.9 71 62.0
Sabra10G0125800 Salix brachista HOM05D005262 ORTHO05D006590 7.7e-17 90.9 80 56.2
MSTRG.11557 Avicennia marina HOM05D005262 ORTHO05D006590 1.0e-16 90.5 76 56.6
MD07G1136300 Malus domestica HOM05D005262 ORTHO05D006590 1.0e-16 90.5 76 56.6
Psat1g094200 Pisum sativum HOM05D005262 ORTHO05D006590 1.0e-16 90.5 68 63.2
Rhsim09G0138500 Rhododendron simsii HOM05D005262 ORTHO05D006590 1.0e-16 90.5 76 59.2
SGA_v2.0_scaffold90G27753 Striga asiatica HOM05D005262 ORTHO05D006590 1.0e-16 90.5 76 55.3
EL10Ac8g18975 Beta vulgaris HOM05D005262 ORTHO05D006590 1.3e-16 90.1 76 56.6
Gohir.A05G412300 Gossypium hirsutum HOM05D005262 ORTHO05D006590 1.3e-16 90.1 68 63.2
Thecc.10G075900 Theobroma cacao HOM05D005262 ORTHO05D006590 1.3e-16 90.1 76 57.9
Atru.chr11.1609 Acer truncatum HOM05D005262 ORTHO05D006590 1.7e-16 89.7 76 56.6
arahy.Tifrunner.gnm1.ann1.EK09V6 Arachis hypogaea HOM05D005262 ORTHO05D006590 1.7e-16 89.7 68 63.2
arahy.Tifrunner.gnm1.ann1.XG4VM3 Arachis hypogaea HOM05D005262 ORTHO05D006590 1.7e-16 89.7 68 63.2
Eucgr.I00218 Eucalyptus grandis HOM05D005262 ORTHO05D006590 1.7e-16 89.7 76 55.3
SGA_v2.0_scaffold25G10746 Striga asiatica HOM05D005262 ORTHO05D006590 2.2e-16 89.4 76 53.9
Glyma.02G110400 Glycine max HOM05D005262 ORTHO05D006590 2.9e-16 89.0 76 59.2
MD01G1063000 Malus domestica HOM05D005262 ORTHO05D006590 2.9e-16 89.0 76 55.3
Phvul.003G046600 Phaseolus vulgaris HOM05D005262 ORTHO05D006590 2.9e-16 89.0 76 56.6
Manes.01G033800 Manihot esculenta HOM05D005262 ORTHO05D006590 3.8e-16 88.6 83 51.8
Potri.010G165500 Populus trichocarpa HOM05D005262 ORTHO05D006590 3.8e-16 88.6 80 55.0
Lj3C1034G10 Lonicera japonica HOM05D006399 ORTHO05D007988 5.0e-16 88.2 75 57.3
Lalb_Chr12g0202851 Lupinus albus HOM05D005262 ORTHO05D006590 5.0e-16 88.2 68 60.3
PGR102G3250 Punica granatum HOM05D005262 ORTHO05D006590 5.0e-16 88.2 80 57.5
VMungo1215G2947 Vigna mungo HOM05D005262 ORTHO05D006590 5.0e-16 88.2 76 56.6
CsaV3_5G032960 Cucumis sativus L. HOM05D005262 ORTHO05D006590 6.5e-16 87.8 75 56.0
Aqoxy1G02417 Aquilegia oxysepala HOM05D005262 ORTHO05D006590 8.5e-16 87.4 78 57.7
AUR62032822 Chenopodium quinoa HOM05D005262 ORTHO05D006590 8.5e-16 87.4 76 52.6
Gorai.011G060300 Gossypium raimondii HOM05D005262 ORTHO05D006590 1.5e-15 86.7 71 57.7
Prupe.2G171300 Prunus persica HOM05D005262 ORTHO05D006590 1.9e-15 86.3 74 55.4
Ciclev10032849m.g Citrus clementina HOM05D005262 ORTHO05D006590 2.5e-15 85.9 76 55.3
Lj6g0009238 Lotus japonicus HOM05D005262 ORTHO05D006590 2.5e-15 85.9 71 56.3
Medtr8g006800 Medicago truncatula HOM05D005262 ORTHO05D006590 3.2e-15 85.5 68 58.8
ClCG08G001930 Citrullus lanatus HOM05D005262 ORTHO05D006590 4.2e-15 85.1 71 57.7
Zm00001eb163570 Zea mays HOM05D005262 ORTHO05D006590 5.5e-15 84.7 79 54.4
FAN19G1549 Fragaria x ananassa HOM05D005262 ORTHO05D006590 9.4e-15 84.0 80 53.8
RcHm_v2.0_Chr7g0220341 Rosa chinensis HOM05D005262 ORTHO05D006590 1.2e-14 83.6 80 51.2
COL.COLO4_28415 Corchorus olitorius HOM05D005262 ORTHO05D006590 1.6e-14 83.2 81 58.0
FAN26G2856 Fragaria x ananassa HOM05D005262 ORTHO05D006590 1.6e-14 83.2 80 52.5
FAN23G1362 Fragaria x ananassa HOM05D005262 ORTHO05D006590 2.1e-14 82.8 80 53.8
Lj2g0009005 Lotus japonicus HOM05D005262 ORTHO05D006590 2.1e-14 82.8 71 54.9
FvH4_1g30250 Fragaria vesca HOM05D005262 ORTHO05D006590 2.7e-14 82.4 80 52.5
Medtr2g087760 Medicago truncatula HOM05D005262 ORTHO05D006590 4.7e-14 81.6 68 57.4
RcHm_v2.0_Chr6g0271051 Rosa chinensis HOM05D005262 ORTHO05D006590 1.8e-13 79.7 82 50.0
SalBow6G1526 Salvia bowleyana HOM05D005262 ORTHO05D006590 8.8e-13 77.4 75 46.7
THA.LOC104818198 Tarenaya hassleriana HOM05D005262 ORTHO05D006590 4.4e-12 75.1 70 51.4
Eucgr.L00661 Eucalyptus grandis HOM05D005262 ORTHO05D006590 4.8e-11 71.6 49 65.3
Nn4g23238 Nelumbo nucifera HOM05D005262 ORTHO05D006590 1.4e-10 70.1 79 50.6
Haze_01349 Corylus avellana HOM05D005262 ORTHO05D006590 1.8e-10 69.7 48 64.6
CAN.G228.3 Capsicum annuum HOM05D005262 ORTHO05D006590 9.1e-10 67.4 53 64.2
Gohir.D10G056500 Gossypium hirsutum HOM05D005262 ORTHO05D006590 1.6e-09 66.6 49 65.3
Sp1g22060 Schrenkiella parvula HOM05D005262 ORTHO05D006590 5.0e-08 61.6 75 45.3
Aa31LG7G8380 Aethionema arabicum HOM05D005262 ORTHO05D006590 6.5e-08 61.2 76 38.2
Thhalv10008835m.g Eutrema salsugineum HOM05D005262 ORTHO05D006590 6.5e-08 61.2 75 42.7
CARHR025210 Cardamine hirsuta HOM05D005262 ORTHO05D006590 1.1e-07 60.5 75 38.7
AUR62005827 Chenopodium quinoa HOM05D006399 ORTHO05D007988 1.9e-07 59.7 74 44.6
FAN15G0396 Fragaria x ananassa HOM05D005262 ORTHO05D006590 2.5e-07 59.3 62 50.0
Carub.0001s2427 Capsella rubella HOM05D005262 ORTHO05D006590 4.2e-07 58.5 75 38.7
AL1G38960 Arabidopsis lyrata HOM05D005262 ORTHO05D006590 7.2e-07 57.8 75 38.7


User provided reference genes

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