Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_36493 Sequoiadendron giganteum HOM05D003225 ORTHO05D003818 5.4e-34 147.1 76 100.0
SEGI_31401 Sequoiadendron giganteum HOM05D003225 ORTHO05D003818 1.2e-17 92.8 56 87.5
CAN.G1178.13 Capsicum annuum HOM05D003225 ORTHO05D003818 3.8e-11 71.2 57 59.6
PGR083G0944 Punica granatum HOM05D003225 ORTHO05D003818 1.1e-10 69.7 52 63.5
Solyc08g078370.4 Solanum lycopersicum HOM05D003225 ORTHO05D003818 2.4e-10 68.6 50 64.0
Sopen08g026860 Solanum pennellii HOM05D003225 ORTHO05D003818 2.4e-10 68.6 50 64.0
PGR083G2794 Punica granatum HOM05D003225 ORTHO05D003818 3.2e-10 68.2 54 59.3
Nitab4.5_0001381g0020 Nicotiana tabacum HOM05D003225 ORTHO05D003818 4.1e-10 67.8 49 65.3
Aa31LG2G21670 Aethionema arabicum HOM05D003225 ORTHO05D003818 5.4e-10 67.4 56 62.5
arahy.Tifrunner.gnm1.ann1.C1DUQD Arachis hypogaea HOM05D003225 ORTHO05D003818 5.4e-10 67.4 49 61.2
arahy.Tifrunner.gnm1.ann1.E3U1P5 Arachis hypogaea HOM05D003225 ORTHO05D003818 5.4e-10 67.4 49 61.2
Nitab4.5_0003050g0010 Nicotiana tabacum HOM05D003225 ORTHO05D003818 5.4e-10 67.4 49 63.3
PSO063G6030 Papaver somniferum HOM05D003225 ORTHO05D003818 5.4e-10 67.4 56 64.3
Ah.15g091560 Amaranthus hybridus HOM05D003225 ORTHO05D003818 7.1e-10 67.0 49 69.4
ATR0088G044 Amborella trichopoda HOM05D003225 ORTHO05D003818 7.1e-10 67.0 67 58.2
Eucgr.L03567 Eucalyptus grandis HOM05D003225 ORTHO05D003818 7.1e-10 67.0 49 67.3
PGR083G1413 Punica granatum HOM05D003225 ORTHO05D003818 7.1e-10 67.0 52 61.5
A01p09230 Brassica napus HOM05D000200 ORTHO05D000262 9.2e-10 66.6 49 65.3
Lalb_Chr06g0170821 Lupinus albus HOM05D003225 ORTHO05D003818 9.2e-10 66.6 49 63.3
Lalb_Chr06g0170851 Lupinus albus HOM05D003225 ORTHO05D003818 9.2e-10 66.6 49 63.3
Manes.12G039500 Manihot esculenta HOM05D003225 ORTHO05D003818 9.2e-10 66.6 56 64.3
Peaxi162Scf00214g00026 Petunia axillaris HOM05D003225 ORTHO05D003818 9.2e-10 66.6 67 53.7
Potri.002G254500 Populus trichocarpa HOM05D003225 ORTHO05D003818 9.2e-10 66.6 48 64.6
SGA_v2.0_scaffold32G13038 Striga asiatica HOM05D003225 ORTHO05D003818 9.2e-10 66.6 49 67.3
BcaNung01374 Brassica carinata HOM05D000200 ORTHO05D000262 1.2e-09 66.2 49 67.3
C01p10810 Brassica napus HOM05D000200 ORTHO05D000262 1.2e-09 66.2 49 67.3
BolC1t01042H Brassica oleracea HOM05D000200 ORTHO05D000262 1.2e-09 66.2 49 67.3
CARHR236490 Cardamine hirsuta HOM05D003225 ORTHO05D003818 1.2e-09 66.2 49 67.3
AUR62008831 Chenopodium quinoa HOM05D003225 ORTHO05D003818 1.2e-09 66.2 49 67.3
AL7G23810 Arabidopsis lyrata HOM05D003225 ORTHO05D003818 1.6e-09 65.9 49 65.3
BraA01t00866Z Brassica rapa HOM05D000200 ORTHO05D000262 1.6e-09 65.9 49 67.3
Thhalv10025355m.g Eutrema salsugineum HOM05D003225 ORTHO05D003818 1.6e-09 65.9 49 65.3
Glyma.10G041500 Glycine max HOM05D003225 ORTHO05D003818 1.6e-09 65.9 49 61.2
Phvul.007G154800 Phaseolus vulgaris HOM05D003225 ORTHO05D003818 1.6e-09 65.9 49 61.2
BcaNung04702 Brassica carinata HOM05D000200 ORTHO05D003818 2.1e-09 65.5 49 63.3
FvH4_2g20180 Fragaria vesca HOM05D003225 ORTHO05D003818 2.1e-09 65.5 49 63.3
MD10G1173500 Malus domestica HOM05D003225 ORTHO05D003818 2.1e-09 65.5 56 60.7
Nitab4.5_0000385g0120 Nicotiana tabacum HOM05D003225 ORTHO05D003818 2.1e-09 65.5 49 65.3
Nitab4.5_0000392g0040 Nicotiana tabacum HOM05D003225 ORTHO05D003818 2.1e-09 65.5 49 65.3
PGR083G1209 Punica granatum HOM05D003225 ORTHO05D003818 2.1e-09 65.5 52 59.6
AT4G28706 Arabidopsis thaliana HOM05D003225 ORTHO05D003818 2.7e-09 65.1 49 65.3
Carub.0007s1194 Capsella rubella HOM05D003225 ORTHO05D003818 2.7e-09 65.1 49 65.3
AUR62008832 Chenopodium quinoa HOM05D003225 ORTHO05D003818 2.7e-09 65.1 51 66.7
HanXRQChr01g0014831 Helianthus annuus HOM05D003225 ORTHO05D003818 2.7e-09 65.1 49 67.3
TWI12G1380 Tripterygium wilfordii HOM05D003225 ORTHO05D003818 2.7e-09 65.1 49 65.3
CANSAT01G1040 Cannabis sativa HOM05D003225 ORTHO05D003818 3.5e-09 64.7 49 63.3
CANSAT01G2940 Cannabis sativa HOM05D003225 ORTHO05D003818 3.5e-09 64.7 49 63.3
Ca_09633_v3 Cicer arietinum L. HOM05D003225 ORTHO05D003818 3.5e-09 64.7 56 55.4
PGSC0003DMG400009744 Solanum tuberosum HOM05D003225 ORTHO05D003818 3.5e-09 64.7 49 63.3
unitig_26.g9791 Utricularia gibba HOM05D003225 ORTHO05D003818 3.5e-09 64.7 56 60.7
Ah.08g213770 Amaranthus hybridus HOM05D003225 ORTHO05D003818 4.6e-09 64.3 49 69.4
Lsat_1_v5_gn_9_11840 Lactuca sativa HOM05D003225 ORTHO05D003818 4.6e-09 64.3 50 62.0
Peaxi162Scf00043g01711 Petunia axillaris HOM05D003225 ORTHO05D003818 4.6e-09 64.3 57 56.1
Thecc.01G246600 Theobroma cacao HOM05D003225 ORTHO05D003818 4.6e-09 64.3 49 65.3
AUR62025409 Chenopodium quinoa HOM05D003225 ORTHO05D003818 6.0e-09 63.9 48 66.7
MELO3C012819.2 Cucumis melo HOM05D003225 ORTHO05D003818 6.0e-09 63.9 50 66.0
CsaV3_3G028560 Cucumis sativus L. HOM05D003225 ORTHO05D003818 6.0e-09 63.9 50 66.0
Medtr1g069320 Medicago truncatula HOM05D003225 ORTHO05D003818 6.0e-09 63.9 56 53.6
Sopen09g025450 Solanum pennellii HOM05D003225 ORTHO05D003818 6.0e-09 63.9 56 57.1
ClCG07G001550 Citrullus lanatus HOM05D003225 ORTHO05D003818 7.8e-09 63.5 50 66.0
Lalb_Chr02g0152871 Lupinus albus HOM05D003225 ORTHO05D003818 7.8e-09 63.5 49 61.2
MD05G1185300 Malus domestica HOM05D003225 ORTHO05D003818 7.8e-09 63.5 56 57.1
Peaxi162Scf01083g00112 Petunia axillaris HOM05D003225 ORTHO05D003818 7.8e-09 63.5 56 57.1
Psat6g063880 Pisum sativum HOM05D003225 ORTHO05D003818 7.8e-09 63.5 56 51.8
PGR044G1760 Punica granatum HOM05D003225 ORTHO05D003818 7.8e-09 63.5 49 63.3
HPP92_025819 Vanilla planifolia HOM05D003225 ORTHO05D003818 7.8e-09 63.5 52 61.5
VMungo0720G1232 Vigna mungo HOM05D003225 ORTHO05D003818 7.8e-09 63.5 49 59.2
Atru.chr5.1956 Acer truncatum HOM05D003225 ORTHO05D003818 1.0e-08 63.2 49 63.3
Sp7g26690 Schrenkiella parvula HOM05D003225 ORTHO05D003818 1.0e-08 63.2 49 65.3
Solyc09g064240.3 Solanum lycopersicum HOM05D003225 ORTHO05D003818 1.0e-08 63.2 56 57.1
GSVIVG01028465001 Vitis vinifera HOM05D003225 ORTHO05D003818 1.0e-08 63.2 49 61.2
Zm00001eb034820 Zea mays HOM05D003225 ORTHO05D003818 1.0e-08 63.2 43 69.8
Actinidia30111 Actinidia chinensis HOM05D003225 ORTHO05D003818 1.3e-08 62.8 49 63.3
arahy.Tifrunner.gnm1.ann1.5ZSF1B Arachis hypogaea HOM05D003225 ORTHO05D003818 1.3e-08 62.8 50 60.0
Dinv43046 Davidia involucrata HOM05D003225 ORTHO05D003818 1.3e-08 62.8 49 61.2
Duzib138G1039 Durio zibethinus HOM05D003225 ORTHO05D003818 1.3e-08 62.8 56 57.1
FAN15G1218 Fragaria x ananassa HOM05D003225 ORTHO05D003818 1.3e-08 62.8 48 62.5
FAN24G0301 Fragaria x ananassa HOM05D003225 ORTHO05D003818 1.3e-08 62.8 48 62.5
HanXRQChr10g0280301 Helianthus annuus HOM05D003225 ORTHO05D003818 1.3e-08 62.8 50 62.0
Lj2C1140G2 Lonicera japonica HOM05D003225 ORTHO05D001460 1.3e-08 62.8 54 55.6
Nn1g03053 Nelumbo nucifera HOM05D003225 ORTHO05D003818 1.3e-08 62.8 56 58.9
Phvul.001G167800 Phaseolus vulgaris HOM05D003225 ORTHO05D003818 1.3e-08 62.8 49 61.2
Rhsim01G0259300 Rhododendron simsii HOM05D003225 ORTHO05D003818 1.3e-08 62.8 49 65.3
Hund05508 Selenicereus undatus HOM05D003225 ORTHO05D003818 1.3e-08 62.8 42 73.8
THA.LOC104804033 Tarenaya hassleriana HOM05D003225 ORTHO05D003818 1.3e-08 62.8 49 63.3
arahy.Tifrunner.gnm1.ann1.B239PN Arachis hypogaea HOM05D003225 ORTHO05D003818 1.7e-08 62.4 64 53.1
CSS0034606 Camellia sinensis var. sinensis HOM05D003225 ORTHO05D003818 1.7e-08 62.4 49 61.2
ClCG07G001530 Citrullus lanatus HOM05D003225 ORTHO05D003818 1.7e-08 62.4 49 63.3
Ciclev10020430m.g Citrus clementina HOM05D003225 ORTHO05D003818 1.7e-08 62.4 49 63.3
COL.COLO4_24810 Corchorus olitorius HOM05D003225 ORTHO05D003818 1.7e-08 62.4 56 57.1
Haze_24728 Corylus avellana HOM05D003225 ORTHO05D003818 1.7e-08 62.4 49 63.3
Gohir.A07G203100 Gossypium hirsutum HOM05D003225 ORTHO05D003818 1.7e-08 62.4 56 58.9
Gorai.001G236300 Gossypium raimondii HOM05D003225 ORTHO05D003818 1.7e-08 62.4 56 58.9
Os08g0566400 Oryza sativa ssp. japonica HOM05D003225 ORTHO05D003818 1.7e-08 62.4 43 69.8
RcHm_v2.0_Chr6g0285941 Rosa chinensis HOM05D003225 ORTHO05D003818 1.7e-08 62.4 49 63.3
TAR365G0417 Trochodendron aralioides HOM05D003225 ORTHO05D003818 1.7e-08 62.4 56 58.9
VMungo1383G0903 Vigna mungo HOM05D003225 ORTHO05D003818 1.7e-08 62.4 56 55.4
Migut.N02238 Erythranthe guttata HOM05D003225 ORTHO05D003818 2.3e-08 62.0 49 69.4
Gohir.A08G046100 Gossypium hirsutum HOM05D003225 ORTHO05D003818 2.3e-08 62.0 56 57.1
Phvul.007G154700 Phaseolus vulgaris HOM05D003225 ORTHO05D003818 2.3e-08 62.0 49 61.2
Hund05507 Selenicereus undatus HOM05D003225 ORTHO05D003818 2.3e-08 62.0 49 65.3
CSS0038579 Camellia sinensis var. sinensis HOM05D003225 ORTHO05D003818 3.0e-08 61.6 56 55.4
CiPaw.04G191700 Carya illinoinensis HOM05D003225 ORTHO05D003818 3.0e-08 61.6 49 61.2
Gorai.004G057700 Gossypium raimondii HOM05D003225 ORTHO05D003818 3.0e-08 61.6 56 57.1
Nitab4.5_0001590g0020 Nicotiana tabacum HOM05D003225 ORTHO05D003818 3.0e-08 61.6 56 55.4
Psat6g063920 Pisum sativum HOM05D003225 ORTHO05D003818 3.0e-08 61.6 49 57.1
Migut.D00492 Erythranthe guttata HOM05D003225 ORTHO05D003818 3.9e-08 61.2 51 64.7
Eucgr.K03579 Eucalyptus grandis HOM05D003225 ORTHO05D003818 3.9e-08 61.2 42 66.7
Gohir.D07G209300 Gossypium hirsutum HOM05D003225 ORTHO05D003818 3.9e-08 61.2 56 57.1
Lj1g0002088 Lotus japonicus HOM05D003225 ORTHO05D003818 3.9e-08 61.2 49 63.3
Medtr1g069325 Medicago truncatula HOM05D003225 ORTHO05D003818 3.9e-08 61.2 56 53.6
Medtr7g099270 Medicago truncatula HOM05D003225 ORTHO05D003818 3.9e-08 61.2 49 63.3
CiPaw.04G191600 Carya illinoinensis HOM05D003225 ORTHO05D003818 5.1e-08 60.8 49 61.2
DCAR_004696 Daucus carota HOM05D003225 ORTHO05D003818 5.1e-08 60.8 49 61.2
ECA247G2482 Erigeron canadensis HOM05D003225 ORTHO05D003818 5.1e-08 60.8 48 62.5
Lj5g0007325 Lotus japonicus HOM05D003225 ORTHO05D003818 6.6e-08 60.5 49 61.2
TPR.G229 Trifolium pratense HOM05D003225 ORTHO05D003818 6.6e-08 60.5 51 56.9
AagrBONN_evm.TU.Sc2ySwM_344.4900 Anthoceros agrestis HOM05D003225 ORTHO05D003818 8.7e-08 60.1 51 62.7
Psat3g051960 Pisum sativum HOM05D003225 ORTHO05D003818 8.7e-08 60.1 49 61.2
Prupe.8G212100 Prunus persica HOM05D003225 ORTHO05D003818 8.7e-08 60.1 49 59.2
Sc02g0004250 Simmondsia chinensis HOM05D003225 ORTHO05D003818 8.7e-08 60.1 49 65.3
TPR.G30860 Trifolium pratense HOM05D003225 ORTHO05D003818 8.7e-08 60.1 49 61.2
Cfa002504 Carpinus fangiana HOM05D003225 ORTHO05D003818 1.1e-07 59.7 49 61.2
Gohir.D08G056600 Gossypium hirsutum HOM05D003225 ORTHO05D003818 1.1e-07 59.7 56 55.4
Lsat_1_v5_gn_5_180041 Lactuca sativa HOM05D003225 ORTHO05D003818 1.1e-07 59.7 49 63.3
Sed0003992 Sechium edule HOM05D003225 ORTHO05D003818 1.1e-07 59.7 49 63.3
EL10Ac7g17735 Beta vulgaris HOM05D003225 ORTHO05D003818 1.9e-07 58.9 55 58.2
Cc01_g17600 Coffea canephora HOM05D003225 ORTHO05D003818 1.9e-07 58.9 49 63.3
Eucgr.L01052 Eucalyptus grandis HOM05D003225 ORTHO05D003818 1.9e-07 58.9 48 66.7
Nitab4.5_0007181g0010 Nicotiana tabacum HOM05D003225 ORTHO05D003818 1.9e-07 58.9 54 55.6
Eucgr.H00838 Eucalyptus grandis HOM05D003225 ORTHO05D003818 2.5e-07 58.5 56 53.6
Hma1.2p1_2051F.1_g312650 Hydrangea macrophylla HOM05D003225 ORTHO05D003818 2.5e-07 58.5 45 62.2
QL09p042915 Quercus lobata HOM05D003225 ORTHO05D003818 2.5e-07 58.5 49 59.2
Cpa.g.sc87.67 Carica papaya HOM05D003225 ORTHO05D003818 3.3e-07 58.2 43 65.1
Cc01_g17560 Coffea canephora HOM05D003225 ORTHO05D003818 3.3e-07 58.2 49 63.3
Glyma.03G169300 Glycine max HOM05D003225 ORTHO05D003818 3.3e-07 58.2 56 53.6
CiPaw.03G272800 Carya illinoinensis HOM05D003225 ORTHO05D003818 4.3e-07 57.8 55 52.7
Eucgr.H00836 Eucalyptus grandis HOM05D003225 ORTHO05D003818 4.3e-07 57.8 49 61.2
Aqoxy5G00087 Aquilegia oxysepala HOM05D003225 ORTHO05D003818 5.6e-07 57.4 54 57.4
ECA248G2748 Erigeron canadensis HOM05D003225 ORTHO05D003818 5.6e-07 57.4 49 61.2
Lj5g0003408 Lotus japonicus HOM05D003225 ORTHO05D003818 5.6e-07 57.4 56 48.2
PGR083G1634 Punica granatum HOM05D003225 ORTHO05D003818 5.6e-07 57.4 57 56.1
THA.LOC104826056 Tarenaya hassleriana HOM05D003225 ORTHO05D003818 5.6e-07 57.4 57 54.4
TPR.G30862 Trifolium pratense HOM05D003225 ORTHO05D003818 5.6e-07 57.4 43 62.8
Lalb_Chr25g0289811 Lupinus albus HOM05D003225 ORTHO05D003818 7.3e-07 57.0 49 59.2
Psat4g116800 Pisum sativum HOM05D003225 ORTHO05D003818 7.3e-07 57.0 49 57.1
Lalb_Chr02g0152831 Lupinus albus HOM05D003225 ORTHO05D003818 9.6e-07 56.6 49 55.1
arahy.Tifrunner.gnm1.ann1.5QC4GP Arachis hypogaea HOM05D003225 ORTHO05D003818 1.2e-06 56.2 55 50.9
Ca_08762_v3 Cicer arietinum L. HOM05D003225 ORTHO05D009593 1.2e-06 56.2 49 59.2
Ca_30216_v3 Cicer arietinum L. HOM05D003225 ORTHO05D003818 1.2e-06 56.2 49 59.2
arahy.Tifrunner.gnm1.ann1.P4ZHWF Arachis hypogaea HOM05D003225 ORTHO05D003818 2.1e-06 55.5 56 57.1
Mapoly0004s0194 Marchantia polymorpha HOM05D003225 ORTHO05D003818 2.8e-06 55.1 54 51.9
CDE05G2850 Ceratophyllum demersum HOM05D003225 ORTHO05D003818 3.6e-06 54.7 56 50.0
Glyma.03G169400 Glycine max HOM05D003225 ORTHO05D003818 3.6e-06 54.7 49 57.1
Aa31LG5G3370 Aethionema arabicum HOM05D003225 ORTHO05D003818 4.7e-06 54.3 49 53.1
VMungo0720G1759 Vigna mungo HOM05D003225 ORTHO05D003818 4.7e-06 54.3 49 55.1
arahy.Tifrunner.gnm1.ann1.ZCX39R Arachis hypogaea HOM05D003225 ORTHO05D003818 6.2e-06 53.9 49 57.1
Glyma.13G128300 Glycine max HOM05D003225 ORTHO05D003818 6.2e-06 53.9 57 52.6
Medtr7g099280 Medicago truncatula HOM05D003225 ORTHO05D003818 6.2e-06 53.9 49 53.1


User provided reference genes

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