Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_36483 Sequoiadendron giganteum HOM05D004640 ORTHO05D005489 1.8e-60 235.7 116 100.0
SMO116G0341 Selaginella moellendorffii HOM05D004640 ORTHO05D005489 5.5e-14 81.3 58 74.1
HPP92_017709 Vanilla planifolia HOM05D004640 ORTHO05D005489 5.5e-14 81.3 55 74.5
HPP92_017742 Vanilla planifolia HOM05D004640 ORTHO05D005489 5.5e-14 81.3 55 74.5
Os03g0659900 Oryza sativa ssp. japonica HOM05D004640 ORTHO05D005489 2.1e-13 79.3 58 69.0
Mapoly0014s0041 Marchantia polymorpha HOM05D004640 ORTHO05D005489 3.6e-13 78.6 58 70.7
Pp3c3_37820 Physcomitrium patens HOM05D004640 ORTHO05D005489 1.0e-12 77.0 58 70.7
AagrBONN_evm.TU.Sc2ySwM_344.1404 Anthoceros agrestis HOM05D004640 ORTHO05D005489 1.4e-12 76.6 58 69.0
MBI01_g44452_MAGBIO Magnolia biondii HOM05D004640 ORTHO05D005489 5.2e-12 74.7 58 65.5
MBI01_g00654_MAGBIO Magnolia biondii HOM05D004640 ORTHO05D005489 3.4e-11 72.0 55 67.3
CDE12G0207 Ceratophyllum demersum HOM05D004640 ORTHO05D005489 2.8e-10 68.9 58 62.1
Aqoxy1G01535 Aquilegia oxysepala HOM05D004640 ORTHO05D005489 2.7e-08 62.4 58 56.9
Atru.chr6.619 Acer truncatum HOM05D004640 ORTHO05D005489 5.9e-08 61.2 65 52.3
Atru.chr6.621_Atru.chr6.622 Acer truncatum HOM05D004640 ORTHO05D005489 5.9e-08 61.2 65 52.3
Actinidia19942 Actinidia chinensis HOM05D004640 ORTHO05D005489 1.3e-07 60.1 58 55.2
Sc09g0001940 Simmondsia chinensis HOM05D004640 ORTHO05D005489 1.3e-07 60.1 58 56.9
Lalb_Chr20g0123511 Lupinus albus HOM05D004640 ORTHO05D005489 1.7e-07 59.7 67 49.3
Nn7g37934 Nelumbo nucifera HOM05D004640 ORTHO05D005489 1.7e-07 59.7 58 56.9
Peaxi162Scf00577g00411 Petunia axillaris HOM05D004640 ORTHO05D005489 1.7e-07 59.7 58 51.7
TPR.G2079 Trifolium pratense HOM05D004640 ORTHO05D005489 1.7e-07 59.7 66 50.0
A01p29810 Brassica napus HOM05D004640 ORTHO05D005489 2.9e-07 58.9 58 55.2
C01p37670 Brassica napus HOM05D004640 ORTHO05D005489 2.9e-07 58.9 58 55.2
BolC1t03731H Brassica oleracea HOM05D004640 ORTHO05D005489 2.9e-07 58.9 58 55.2
BraA01t03109Z Brassica rapa HOM05D004640 ORTHO05D005489 2.9e-07 58.9 58 55.2
Glyma.08G187100 Glycine max HOM05D004640 ORTHO05D005489 2.9e-07 58.9 58 53.4
Glyma.15G045900 Glycine max HOM05D004640 ORTHO05D005489 2.9e-07 58.9 58 53.4
Hma1.2p1_0296F.1_g116830 Hydrangea macrophylla HOM05D004640 ORTHO05D005489 2.9e-07 58.9 58 53.4
Medtr2g006880 Medicago truncatula HOM05D004640 ORTHO05D005489 2.9e-07 58.9 66 50.0
Phvul.006G215300 Phaseolus vulgaris HOM05D004640 ORTHO05D005489 2.9e-07 58.9 58 53.4
THA.LOC104809619 Tarenaya hassleriana HOM05D004640 ORTHO05D005489 2.9e-07 58.9 64 51.6
VMungo0540G1095 Vigna mungo HOM05D004640 ORTHO05D005489 2.9e-07 58.9 58 53.4
FAN04G1948 Fragaria x ananassa HOM05D004640 ORTHO05D005489 3.8e-07 58.5 58 53.4
FAN08G0534 Fragaria x ananassa HOM05D004640 ORTHO05D005489 3.8e-07 58.5 58 53.4
FAN13G0955 Fragaria x ananassa HOM05D004640 ORTHO05D005489 3.8e-07 58.5 58 53.4
Manes.10G125900 Manihot esculenta HOM05D004640 ORTHO05D005489 3.8e-07 58.5 58 51.7
Sed0025782 Sechium edule HOM05D004640 ORTHO05D005489 3.8e-07 58.5 58 53.4
vmacro12737 Vaccinium macrocarpon HOM05D004640 ORTHO05D005489 3.8e-07 58.5 58 55.2
GSVIVG01022882001 Vitis vinifera HOM05D004640 ORTHO05D005489 3.8e-07 58.5 58 56.9
CSS0010715 Camellia sinensis var. sinensis HOM05D004640 ORTHO05D005489 5.0e-07 58.2 58 55.2
CSS0031954 Camellia sinensis var. sinensis HOM05D004640 ORTHO05D005489 5.0e-07 58.2 58 55.2
ClCG05G009610 Citrullus lanatus HOM05D004640 ORTHO05D005489 5.0e-07 58.2 58 53.4
CsaV3_3G019120 Cucumis sativus L. HOM05D004640 ORTHO05D005489 5.0e-07 58.2 58 53.4
Thhalv10023347m.g Eutrema salsugineum HOM05D004640 ORTHO05D005489 5.0e-07 58.2 58 55.2
Nitab4.5_0001785g0050 Nicotiana tabacum HOM05D004640 ORTHO05D005489 5.0e-07 58.2 58 53.4
arahy.Tifrunner.gnm1.ann1.8G9BB5 Arachis hypogaea HOM05D004640 ORTHO05D005489 6.6e-07 57.8 58 51.7
arahy.Tifrunner.gnm1.ann1.Y1PSG0 Arachis hypogaea HOM05D004640 ORTHO05D005489 6.6e-07 57.8 58 51.7
Dinv24776 Davidia involucrata HOM05D004640 ORTHO05D005489 6.6e-07 57.8 58 53.4
Duzib052G0332 Durio zibethinus HOM05D004640 ORTHO05D005489 6.6e-07 57.8 58 51.7
Gohir.A04G121200 Gossypium hirsutum HOM05D004640 ORTHO05D005489 6.6e-07 57.8 58 53.4
Gohir.D04G163933 Gossypium hirsutum HOM05D004640 ORTHO05D005489 6.6e-07 57.8 58 53.4
Gorai.012G151900 Gossypium raimondii HOM05D004640 ORTHO05D005489 6.6e-07 57.8 58 53.4
Lj6g0021650 Lotus japonicus HOM05D004640 ORTHO05D005489 6.6e-07 57.8 66 50.0
Thecc.02G088200 Theobroma cacao HOM05D004640 ORTHO05D005489 6.6e-07 57.8 58 53.4
BcaC02g10600 Brassica carinata HOM05D004640 ORTHO05D005489 8.6e-07 57.4 58 56.9
BcaC06g31828 Brassica carinata HOM05D004640 ORTHO05D005489 8.6e-07 57.4 58 55.2
BNapus_Darmor_BZH_scaffold_271p00030 Brassica napus HOM05D004640 ORTHO05D005489 8.6e-07 57.4 58 56.9
C04p25650 Brassica napus HOM05D004640 ORTHO05D005489 8.6e-07 57.4 58 56.9
C05p50900 Brassica napus HOM05D004640 ORTHO05D005489 8.6e-07 57.4 58 56.9
BolC4t24244H Brassica oleracea HOM05D004640 ORTHO05D005489 8.6e-07 57.4 58 56.9
CANSAT11G0894 Cannabis sativa HOM05D004640 ORTHO05D005489 8.6e-07 57.4 58 53.4
Ca_00068_v3 Cicer arietinum L. HOM05D004640 ORTHO05D005489 8.6e-07 57.4 66 48.5
Eucgr.I02737 Eucalyptus grandis HOM05D004640 ORTHO05D005489 8.6e-07 57.4 58 51.7
FvH4_5g29191 Fragaria vesca HOM05D004640 ORTHO05D005489 8.6e-07 57.4 58 53.4
Gohir.A01G005001 Gossypium hirsutum HOM05D004640 ORTHO05D005489 8.6e-07 57.4 58 51.7
PSO675G0104 Papaver somniferum HOM05D004640 ORTHO05D005489 8.6e-07 57.4 58 55.2
Prupe.1G004500 Prunus persica HOM05D004640 ORTHO05D005489 8.6e-07 57.4 58 53.4
PGR142G2697 Punica granatum HOM05D004640 ORTHO05D005489 8.6e-07 57.4 58 53.4
RcHm_v2.0_Chr1g0332251 Rosa chinensis HOM05D004640 ORTHO05D005489 8.6e-07 57.4 58 53.4
AL2G15460 Arabidopsis lyrata HOM05D004640 ORTHO05D005489 1.1e-06 57.0 58 55.2
AT1G60995 Arabidopsis thaliana HOM05D004640 ORTHO05D005489 1.1e-06 57.0 58 55.2
Carub.0002s0421 Capsella rubella HOM05D004640 ORTHO05D005489 1.1e-06 57.0 58 55.2
Duzib132G0532 Durio zibethinus HOM05D004640 ORTHO05D005489 1.1e-06 57.0 58 51.7
TAR381G0517 Trochodendron aralioides HOM05D004640 ORTHO05D005489 1.1e-06 57.0 58 56.9
EL10Ac4g09724 Beta vulgaris HOM05D004640 ORTHO05D005489 1.5e-06 56.6 58 53.4
Gohir.D01G005100 Gossypium hirsutum HOM05D004640 ORTHO05D005489 1.5e-06 56.6 58 51.7
Gorai.002G006000 Gossypium raimondii HOM05D004640 ORTHO05D005489 1.5e-06 56.6 58 51.7
Oeu046366.1 Olea europaea HOM05D004640 ORTHO05D005489 1.5e-06 56.6 58 50.0
TWI59G0201 Tripterygium wilfordii HOM05D004640 ORTHO05D005489 1.5e-06 56.6 64 46.9
BcaB04g20302 Brassica carinata HOM05D004640 ORTHO05D005489 1.9e-06 56.2 58 53.4
FAN18G0226 Fragaria x ananassa HOM05D004640 ORTHO05D005489 1.9e-06 56.2 58 51.7
PSO541G2962 Papaver somniferum HOM05D004640 ORTHO05D005489 1.9e-06 56.2 58 53.4
Hund21765 Selenicereus undatus HOM05D004640 ORTHO05D005489 1.9e-06 56.2 58 53.4
Solyc04g026280.2 Solanum lycopersicum HOM05D004640 ORTHO05D005489 1.9e-06 56.2 58 51.7
ATR0763G087 Amborella trichopoda HOM05D004640 ORTHO05D005489 2.5e-06 55.8 51 60.8
CiPaw.05G048700 Carya illinoinensis HOM05D004640 ORTHO05D005489 2.5e-06 55.8 58 53.4
Ah.06g188240 Amaranthus hybridus HOM05D004640 ORTHO05D005489 3.3e-06 55.5 58 50.0
Lsat_1_v5_gn_5_71601 Lactuca sativa HOM05D004640 ORTHO05D005489 3.3e-06 55.5 58 51.7
DCAR_021303 Daucus carota HOM05D004640 ORTHO05D005489 4.2e-06 55.1 58 51.7
HanXRQChr15g0469061 Helianthus annuus HOM05D004640 ORTHO05D005489 4.2e-06 55.1 58 51.7
Actinidia36578 Actinidia chinensis HOM05D004640 ORTHO05D005489 5.5e-06 54.7 58 50.0
MSTRG.23232 Avicennia marina HOM05D004640 ORTHO05D005489 5.5e-06 54.7 58 51.7
MD08G1235100 Malus domestica HOM05D004640 ORTHO05D005489 7.2e-06 54.3 58 51.7
MD15G1426300 Malus domestica HOM05D004640 ORTHO05D005489 7.2e-06 54.3 58 51.7
QL02p099200 Quercus lobata HOM05D004640 ORTHO05D005489 7.2e-06 54.3 58 50.0
Sabra01G0163500 Salix brachista HOM05D004640 ORTHO05D005489 7.2e-06 54.3 58 51.7
Sp2g03520 Schrenkiella parvula HOM05D004640 ORTHO05D005489 7.2e-06 54.3 58 53.4
TWI14G1252 Tripterygium wilfordii HOM05D004640 ORTHO05D005489 7.2e-06 54.3 58 51.7
Cc09_g07620 Coffea canephora HOM05D004640 ORTHO05D005489 9.5e-06 53.9 58 48.3


User provided reference genes

Program Settings