Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_36380 Sequoiadendron giganteum HOM05D005365 ORTHO05D006910 2.8e-85 318.5 157 100.0
SEGI_16018 Sequoiadendron giganteum HOM05D005365 ORTHO05D006910 2.4e-12 76.3 50 74.0
TAR374G0610 Trochodendron aralioides HOM05D005365 ORTHO05D006910 1.1e-09 67.4 50 64.0
ATR0753G168 Amborella trichopoda HOM05D005365 ORTHO05D006910 2.3e-07 59.7 56 51.8
Nitab4.5_0000201g0010 Nicotiana tabacum HOM05D005365 ORTHO05D006910 2.3e-07 59.7 47 61.7
Thhalv10027629m.g Eutrema salsugineum HOM05D005365 ORTHO05D006910 3.0e-07 59.3 50 54.0
Nitab4.5_0012785g0010 Nicotiana tabacum HOM05D005365 ORTHO05D006910 3.0e-07 59.3 47 59.6
CDE05G1264 Ceratophyllum demersum HOM05D005365 ORTHO05D006910 4.0e-07 58.9 49 53.1
Lj2C520T1 Lonicera japonica HOM05D005365 ORTHO05D006910 4.0e-07 58.9 46 60.9
Zm00001eb379890 Zea mays HOM05D005365 ORTHO05D006910 4.0e-07 58.9 50 56.0
Carub.0007s3279 Capsella rubella HOM05D005365 ORTHO05D006910 5.2e-07 58.5 50 54.0
CARHR215230 Cardamine hirsuta HOM05D005365 ORTHO05D006910 5.2e-07 58.5 50 54.0
BcaB06g27110 Brassica carinata HOM05D005365 ORTHO05D006910 6.8e-07 58.2 50 56.0
Cc07_g13300 Coffea canephora HOM05D005365 ORTHO05D006910 6.8e-07 58.2 47 53.2
Haze_14277 Corylus avellana HOM05D005365 ORTHO05D006910 6.8e-07 58.2 44 68.2
MBI19_g22067_MAGBIO Magnolia biondii HOM05D005365 ORTHO05D006910 6.8e-07 58.2 50 54.0
Nn4g24353 Nelumbo nucifera HOM05D005365 ORTHO05D006910 6.8e-07 58.2 50 60.0
PSO017G3744 Papaver somniferum HOM05D005365 ORTHO05D006910 6.8e-07 58.2 50 58.0
PSO478G2448 Papaver somniferum HOM05D005365 ORTHO05D006910 6.8e-07 58.2 50 58.0
Peaxi162Scf00562g00038 Petunia axillaris HOM05D005365 ORTHO05D006910 6.8e-07 58.2 47 59.6
AT5G37630 Arabidopsis thaliana HOM05D005365 ORTHO05D006910 8.9e-07 57.8 50 52.0
Sp7g04480 Schrenkiella parvula HOM05D005365 ORTHO05D006910 8.9e-07 57.8 50 54.0
AL7G46400 Arabidopsis lyrata HOM05D005365 ORTHO05D006910 1.2e-06 57.4 50 50.0
A04p10780 Brassica napus HOM05D005365 ORTHO05D006910 1.2e-06 57.4 50 54.0
C04p44500 Brassica napus HOM05D005365 ORTHO05D006910 1.2e-06 57.4 50 54.0
BraA04t16742Z Brassica rapa HOM05D005365 ORTHO05D006910 1.2e-06 57.4 50 54.0
Cfa007794 Carpinus fangiana HOM05D005365 ORTHO05D006910 1.2e-06 57.4 46 63.0
QL02p059099 Quercus lobata HOM05D005365 ORTHO05D006910 1.5e-06 57.0 46 63.0
Atru.chr1.1986 Acer truncatum HOM05D005365 ORTHO05D006910 2.0e-06 56.6 46 56.5
THA.LOC104805627 Tarenaya hassleriana HOM05D005365 ORTHO05D006910 2.0e-06 56.6 50 52.0
Ciclev10010965m.g Citrus clementina HOM05D005365 ORTHO05D006910 2.6e-06 56.2 48 56.2
Prupe.3G017700 Prunus persica HOM05D005365 ORTHO05D006910 2.6e-06 56.2 46 56.5
Aa31LG9G17470 Aethionema arabicum HOM05D005365 ORTHO05D006910 3.4e-06 55.8 96 37.5
BcaC02g09592 Brassica carinata HOM05D005365 ORTHO05D006910 3.4e-06 55.8 50 52.0
BolC4t26020H Brassica oleracea HOM05D005365 ORTHO05D006910 3.4e-06 55.8 50 52.0
CAN.G222.54 Capsicum annuum HOM05D005365 ORTHO05D006910 3.4e-06 55.8 47 53.2
Solyc11g011370.2 Solanum lycopersicum HOM05D005365 ORTHO05D006910 3.4e-06 55.8 47 53.2
Sopen11g006160 Solanum pennellii HOM05D005365 ORTHO05D006910 3.4e-06 55.8 47 53.2
DCAR_028454 Daucus carota HOM05D005365 ORTHO05D006910 4.4e-06 55.5 50 52.0
Potri.004G085500 Populus trichocarpa HOM05D005365 ORTHO05D006910 4.4e-06 55.5 44 63.6
TWI77G0914 Tripterygium wilfordii HOM05D005365 ORTHO05D006910 4.4e-06 55.5 46 54.3
Dinv28185 Davidia involucrata HOM05D005365 ORTHO05D006910 5.8e-06 55.1 50 52.0
COL.COLO4_13431 Corchorus olitorius HOM05D005365 ORTHO05D006910 7.5e-06 54.7 46 54.3
PGSC0003DMG400013306 Solanum tuberosum HOM05D005365 ORTHO05D006910 7.5e-06 54.7 47 51.1
SGA_v2.0_scaffold45G17160 Striga asiatica HOM05D005365 ORTHO05D006910 7.5e-06 54.7 47 51.1
CSS0031268 Camellia sinensis var. sinensis HOM05D005365 ORTHO05D006910 9.8e-06 54.3 60 45.0
CSS0046739 Camellia sinensis var. sinensis HOM05D005365 ORTHO05D006910 9.8e-06 54.3 60 45.0
CANSAT80G2352 Cannabis sativa HOM05D005365 ORTHO05D006910 9.8e-06 54.3 46 50.0
CiPaw.03G073200 Carya illinoinensis HOM05D005365 ORTHO05D006910 9.8e-06 54.3 46 60.9
MD17G1268900 Malus domestica HOM05D005365 ORTHO05D006910 9.8e-06 54.3 47 55.3
Manes.03G027200 Manihot esculenta HOM05D005365 ORTHO05D006910 9.8e-06 54.3 46 50.0
Sabra04G0056600 Salix brachista HOM05D005365 ORTHO05D006910 9.8e-06 54.3 44 61.4


User provided reference genes

Program Settings