Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_36321 Sequoiadendron giganteum HOM05D001026 ORTHO05D005232 8.3e-90 333.6 156 100.0
FvH4_5g36450 Fragaria vesca HOM05D001026 ORTHO05D005232 3.2e-33 145.6 115 61.7
FAN04G2218 Fragaria x ananassa HOM05D001026 ORTHO05D005232 3.2e-33 145.6 115 61.7
FAN08G3634 Fragaria x ananassa HOM05D001026 ORTHO05D005232 3.2e-33 145.6 113 62.8
FAN18G1967 Fragaria x ananassa HOM05D001026 ORTHO05D005232 3.2e-33 145.6 115 61.7
Eucgr.B00041 Eucalyptus grandis HOM05D001026 ORTHO05D005232 5.5e-33 144.8 88 73.9
GSVIVG01009085001 Vitis vinifera HOM05D001026 ORTHO05D005232 5.5e-33 144.8 88 72.7
Hund26990 Selenicereus undatus HOM05D001026 ORTHO05D005232 7.2e-33 144.4 88 75.0
Cfa017894 Carpinus fangiana HOM05D001026 ORTHO05D005232 9.4e-33 144.1 88 72.7
Haze_18261 Corylus avellana HOM05D001026 ORTHO05D005232 9.4e-33 144.1 88 72.7
Lj6g0009212 Lotus japonicus HOM05D001026 ORTHO05D005232 1.6e-32 143.3 88 76.1
Sabra02G0079000 Salix brachista HOM05D001026 ORTHO05D005232 2.1e-32 142.9 79 79.7
Ca_16276_v3 Cicer arietinum L. HOM05D001026 ORTHO05D005232 2.7e-32 142.5 88 72.7
FAN13G1430 Fragaria x ananassa HOM05D001026 ORTHO05D005232 2.7e-32 142.5 115 60.9
Medtr3g080120 Medicago truncatula HOM05D001026 ORTHO05D005232 2.7e-32 142.5 115 60.9
Duzib041G0801 Durio zibethinus HOM05D001026 ORTHO05D005232 3.6e-32 142.1 113 61.1
Potri.002G100800 Populus trichocarpa HOM05D001026 ORTHO05D005232 3.6e-32 142.1 79 78.5
RcHm_v2.0_Chr7g0238491 Rosa chinensis HOM05D001026 ORTHO05D005232 3.6e-32 142.1 71 87.3
Atru.chr13.1116 Acer truncatum HOM05D001026 ORTHO05D005232 4.6e-32 141.7 88 71.6
Aqoxy6G00082 Aquilegia oxysepala HOM05D001026 ORTHO05D005232 4.6e-32 141.7 88 70.5
arahy.Tifrunner.gnm1.ann1.H5V4Y1 Arachis hypogaea HOM05D001026 ORTHO05D005232 4.6e-32 141.7 88 72.7
TAR381G1087 Trochodendron aralioides HOM05D001026 ORTHO05D005232 4.6e-32 141.7 88 70.5
arahy.Tifrunner.gnm1.ann1.SJ0MJA Arachis hypogaea HOM05D001026 ORTHO05D005232 6.1e-32 141.4 88 71.6
Prupe.1G523400 Prunus persica HOM05D001026 ORTHO05D005232 6.1e-32 141.4 72 86.1
Thecc.08G101700 Theobroma cacao HOM05D001026 ORTHO05D005232 6.1e-32 141.4 72 83.3
CANSAT64G2709 Cannabis sativa HOM05D001026 ORTHO05D005232 7.9e-32 141.0 88 70.5
CiPaw.15G045700 Carya illinoinensis HOM05D001026 ORTHO05D005232 7.9e-32 141.0 88 72.7
TWI56G0493 Tripterygium wilfordii HOM05D001026 ORTHO05D005232 7.9e-32 141.0 72 83.3
Ciclev10000130m.g Citrus clementina HOM05D001026 ORTHO05D005232 1.0e-31 140.6 115 57.4
Psat5g110840 Pisum sativum HOM05D001026 ORTHO05D005232 1.0e-31 140.6 115 59.1
THA.LOC104816596 Tarenaya hassleriana HOM05D001026 ORTHO05D005232 1.0e-31 140.6 72 84.7
Nn7g37838 Nelumbo nucifera HOM05D001026 ORTHO05D005232 1.4e-31 140.2 88 71.6
Glyma.20G056600 Glycine max HOM05D001026 ORTHO05D005232 1.8e-31 139.8 113 60.2
MD08G1188800 Malus domestica HOM05D001026 ORTHO05D005232 1.8e-31 139.8 72 83.3
TPR.G34506 Trifolium pratense HOM05D001026 ORTHO05D005232 1.8e-31 139.8 88 71.6
HanXRQChr09g0248911 Helianthus annuus HOM05D001026 ORTHO05D005232 2.3e-31 139.4 88 69.3
Solyc04g074720.3 Solanum lycopersicum HOM05D001026 ORTHO05D005232 2.3e-31 139.4 79 74.7
ClCG11G014330 Citrullus lanatus HOM05D001026 ORTHO05D005232 3.0e-31 139.0 88 70.5
CsaV3_3G047720 Cucumis sativus L. HOM05D001026 ORTHO05D005232 3.0e-31 139.0 88 70.5
Dinv05858 Davidia involucrata HOM05D001026 ORTHO05D005232 3.0e-31 139.0 84 72.6
VMungo0540G1065 Vigna mungo HOM05D001026 ORTHO05D005232 3.0e-31 139.0 113 59.3
ECA232G4443 Erigeron canadensis HOM05D001026 ORTHO05D005232 3.9e-31 138.7 88 69.3
Thhalv10006673m.g Eutrema salsugineum HOM05D001026 ORTHO05D005232 3.9e-31 138.7 79 78.5
Manes.18G025208 Manihot esculenta HOM05D001026 ORTHO05D005232 3.9e-31 138.7 113 59.3
Manes.18G063378 Manihot esculenta HOM05D001026 ORTHO05D005232 3.9e-31 138.7 113 59.3
PSO447G0261 Papaver somniferum HOM05D001026 ORTHO05D005232 3.9e-31 138.7 88 67.0
PSO700G0312 Papaver somniferum HOM05D001026 ORTHO05D005232 3.9e-31 138.7 88 67.0
CAN.G1173.1 Capsicum annuum HOM05D001026 ORTHO05D005232 5.1e-31 138.3 113 56.6
QL02p002343 Quercus lobata HOM05D001026 ORTHO05D005232 5.1e-31 138.3 115 59.1
Gohir.A03G045800 Gossypium hirsutum HOM05D001026 ORTHO05D005232 6.7e-31 137.9 113 58.4
Gohir.D03G121400 Gossypium hirsutum HOM05D001026 ORTHO05D005232 6.7e-31 137.9 113 58.4
Gorai.003G128400 Gossypium raimondii HOM05D001026 ORTHO05D005232 6.7e-31 137.9 113 58.4
Lsat_1_v5_gn_1_3061 Lactuca sativa HOM05D001026 ORTHO05D005232 6.7e-31 137.9 79 75.9
Lalb_Chr17g0347341 Lupinus albus HOM05D001026 ORTHO05D005232 6.7e-31 137.9 79 74.7
Lalb_Chr18g0048141 Lupinus albus HOM05D001026 ORTHO05D005232 6.7e-31 137.9 88 68.2
MD15G1376600 Malus domestica HOM05D001026 ORTHO05D005232 6.7e-31 137.9 72 80.6
Sopen04g029690 Solanum pennellii HOM05D001026 ORTHO05D005232 6.7e-31 137.9 79 73.4
vmacro21290 Vaccinium macrocarpon HOM05D001026 ORTHO05D005232 6.7e-31 137.9 88 68.2
ATR0684G075 Amborella trichopoda HOM05D001026 ORTHO05D005232 8.8e-31 137.5 72 81.9
Ca_06108_v3 Cicer arietinum L. HOM05D001026 ORTHO05D005232 8.8e-31 137.5 88 68.2
Lsat_1_v5_gn_9_73921 Lactuca sativa HOM05D001026 ORTHO05D005232 8.8e-31 137.5 88 68.2
MBI06_g22313_MAGBIO Magnolia biondii HOM05D001026 ORTHO05D005232 8.8e-31 137.5 81 74.1
Nitab4.5_0000786g0020 Nicotiana tabacum HOM05D001026 ORTHO05D005232 8.8e-31 137.5 79 74.7
Nitab4.5_0005108g0010 Nicotiana tabacum HOM05D001026 ORTHO05D005232 8.8e-31 137.5 79 74.7
Peaxi162Scf00030g02517 Petunia axillaris HOM05D001026 ORTHO05D005232 8.8e-31 137.5 79 74.7
Phvul.L003337 Phaseolus vulgaris HOM05D001026 ORTHO05D005232 8.8e-31 137.5 113 59.3
Sed0011558 Sechium edule HOM05D001026 ORTHO05D005232 8.8e-31 137.5 79 77.2
Aa31LG6G8880 Aethionema arabicum HOM05D001026 ORTHO05D005232 1.1e-30 137.1 72 83.3
Actinidia30796 Actinidia chinensis HOM05D001026 ORTHO05D005232 1.5e-30 136.7 88 69.3
Carub.0001s3287 Capsella rubella HOM05D001026 ORTHO05D005232 1.5e-30 136.7 79 77.2
MELO3C003550.2 Cucumis melo HOM05D001026 ORTHO05D005232 1.5e-30 136.7 69 85.5
Glyma.13G027300 Glycine max HOM05D001026 ORTHO05D005232 1.5e-30 136.7 72 79.2
Sed0018981 Sechium edule HOM05D001026 ORTHO05D005232 1.5e-30 136.7 88 70.5
AL1G49940 Arabidopsis lyrata HOM05D001026 ORTHO05D005232 2.0e-30 136.3 79 77.2
AT1G35220 Arabidopsis thaliana HOM05D001026 ORTHO05D005232 2.0e-30 136.3 79 77.2
Medtr5g085880 Medicago truncatula HOM05D001026 ORTHO05D005232 2.0e-30 136.3 101 62.4
Ah.05g169670 Amaranthus hybridus HOM05D001026 ORTHO05D005232 3.3e-30 135.6 88 69.3
CARHR286320 Cardamine hirsuta HOM05D001026 ORTHO05D005232 3.3e-30 135.6 79 77.2
Psat2g022120 Pisum sativum HOM05D001026 ORTHO05D005232 3.3e-30 135.6 101 61.4
SalBow7G3028 Salvia bowleyana HOM05D001026 ORTHO05D005232 4.3e-30 135.2 88 65.9
SGA_v2.0_scaffold74G24568 Striga asiatica HOM05D001026 ORTHO05D005232 4.3e-30 135.2 88 65.9
Migut.C00225 Erythranthe guttata HOM05D001026 ORTHO05D005232 5.7e-30 134.8 88 68.2
Hma1.2p1_0593F.1_g185750 Hydrangea macrophylla HOM05D001026 ORTHO05D005232 5.7e-30 134.8 72 79.2
Mapoly0104s0038 Marchantia polymorpha HOM05D001026 ORTHO05D005232 5.7e-30 134.8 109 58.7
Sp1g25380 Schrenkiella parvula HOM05D001026 ORTHO05D005232 5.7e-30 134.8 79 75.9
BcaB03g13886 Brassica carinata HOM05D001026 ORTHO05D005232 7.4e-30 134.4 72 81.9
BcaC06g35430 Brassica carinata HOM05D001026 ORTHO05D005232 7.4e-30 134.4 72 81.9
A07p10680 Brassica napus HOM05D001026 ORTHO05D005232 7.4e-30 134.4 72 81.9
C07p16280 Brassica napus HOM05D001026 ORTHO05D005232 7.4e-30 134.4 72 81.9
BolC7t42122H Brassica oleracea HOM05D001026 ORTHO05D005232 7.4e-30 134.4 72 81.9
BraA07t28862Z Brassica rapa HOM05D001026 ORTHO05D005232 7.4e-30 134.4 72 81.9
Oeu029742.2 Olea europaea HOM05D001026 ORTHO05D005232 7.4e-30 134.4 88 68.2
Sc01g0000810 Simmondsia chinensis HOM05D001026 ORTHO05D005232 7.4e-30 134.4 113 56.6
MSTRG.24986 Avicennia marina HOM05D001026 ORTHO05D005232 9.7e-30 134.0 88 63.6
Glyma.02G270100 Glycine max HOM05D001026 ORTHO05D005232 9.7e-30 134.0 79 72.2
AagrBONN_evm.TU.Sc2ySwM_228.1520 Anthoceros agrestis HOM05D001026 ORTHO05D005232 1.3e-29 133.7 79 73.4
LjContig00564g0017936 Lotus japonicus HOM05D001026 ORTHO05D005232 1.3e-29 133.7 110 57.3
Cc10_g06660 Coffea canephora HOM05D001026 ORTHO05D005232 1.7e-29 133.3 79 70.9
SHI20572 Sapria himalayana HOM05D001026 ORTHO05D005232 1.7e-29 133.3 115 53.9
EL10Ac1g01144 Beta vulgaris HOM05D001026 ORTHO05D005232 2.2e-29 132.9 88 67.0
Manes.02G148900 Manihot esculenta HOM05D001026 ORTHO05D005232 2.8e-29 132.5 88 65.9
Zm00001eb288650 Zea mays HOM05D001026 ORTHO05D005232 2.8e-29 132.5 108 57.4
SMO356G0157 Selaginella moellendorffii HOM05D001026 ORTHO05D005232 3.7e-29 132.1 79 70.9
ECA247G3686 Erigeron canadensis HOM05D001026 ORTHO05D005232 4.8e-29 131.7 88 65.9
PGSC0003DMG400017755 Solanum tuberosum HOM05D001026 ORTHO05D005232 4.8e-29 131.7 116 53.4
arahy.Tifrunner.gnm1.ann1.Z84UIM Arachis hypogaea HOM05D001026 ORTHO05D005232 6.3e-29 131.3 88 65.9
arahy.Tifrunner.gnm1.ann1.1274C3 Arachis hypogaea HOM05D001026 ORTHO05D005232 8.2e-29 131.0 88 64.8
Os05g0355133 Oryza sativa ssp. japonica HOM05D001026 ORTHO05D005232 1.1e-28 130.6 108 55.6
Rhsim06G0077700 Rhododendron simsii HOM05D001026 ORTHO05D005232 1.1e-28 130.6 95 63.2
Solyc12g057130.3 Solanum lycopersicum HOM05D001026 ORTHO05D005232 1.1e-28 130.6 116 54.3
HPP92_016948 Vanilla planifolia HOM05D001026 ORTHO05D005232 1.1e-28 130.6 72 77.8
COL.COLO4_12005 Corchorus olitorius HOM05D001026 ORTHO05D005232 1.4e-28 130.2 70 75.7
DCAR_009580 Daucus carota HOM05D001026 ORTHO05D005232 1.4e-28 130.2 79 74.7
VMungo0647G2280 Vigna mungo HOM05D001026 ORTHO05D005232 2.4e-28 129.4 79 69.6
Gorai.010G037700 Gossypium raimondii HOM05D001026 ORTHO05D005232 3.1e-28 129.0 72 73.6
HanXRQChr12g0379801 Helianthus annuus HOM05D001026 ORTHO05D005232 3.1e-28 129.0 79 72.2
Phvul.008G211900 Phaseolus vulgaris HOM05D001026 ORTHO05D005232 3.1e-28 129.0 79 69.6
Hund16887 Selenicereus undatus HOM05D001026 ORTHO05D005232 9.1e-28 127.5 113 55.8
Sopen12g029790 Solanum pennellii HOM05D001026 ORTHO05D005232 1.5e-27 126.7 69 76.8
TPR.G14449 Trifolium pratense HOM05D001026 ORTHO05D005232 1.5e-27 126.7 89 64.0
Os01g0303200 Oryza sativa ssp. japonica HOM05D001026 ORTHO05D005232 2.6e-27 125.9 72 69.4
AUR62018974 Chenopodium quinoa HOM05D001026 ORTHO05D005232 4.5e-27 125.2 104 57.7
Pp3c1_27170 Physcomitrium patens HOM05D001026 ORTHO05D005232 5.0e-26 121.7 117 51.3
SMO134G0184 Selaginella moellendorffii HOM05D001026 ORTHO05D005232 1.6e-24 116.7 102 49.0
Pp3c2_15510 Physcomitrium patens HOM05D001026 ORTHO05D005232 2.1e-24 116.3 72 68.1
CBR_g5699 Chara braunii HOM05D001026 ORTHO05D005232 4.7e-24 115.2 88 60.2
CDE10G1069 Ceratophyllum demersum HOM05D001026 ORTHO05D005232 3.9e-15 85.5 42 85.7
SEGI_18104 Sequoiadendron giganteum HOM05D003475 ORTHO05D004155 8.8e-15 84.3 45 75.6
SEGI_09032 Sequoiadendron giganteum HOM05D000023 ORTHO05D000014 4.4e-14 82.0 45 75.6
Cre10.g457150 Chlamydomonas reinhardtii HOM05D001026 ORTHO05D005232 9.7e-14 80.9 121 36.4
Zm00001eb130190 Zea mays HOM05D001026 ORTHO05D005232 9.7e-14 80.9 42 78.6
AUR62027815 Chenopodium quinoa HOM05D001026 ORTHO05D005232 7.0e-12 74.7 57 59.6
Dinv07074 Davidia involucrata HOM05D001026 ORTHO05D005232 2.9e-10 69.3 32 87.5
Psat3g111360 Pisum sativum HOM05D001026 ORTHO05D005232 5.0e-10 68.6 60 55.0
HPP92_016951 Vanilla planifolia HOM05D001026 ORTHO05D005232 1.5e-09 67.0 51 58.8
Psat0s5307g0040 Pisum sativum HOM05D001026 ORTHO05D005232 7.2e-09 64.7 32 81.2
Psat4g114320 Pisum sativum HOM05D001026 ORTHO05D005232 1.8e-07 60.1 51 52.9


User provided reference genes

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