Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_36320 Sequoiadendron giganteum HOM05D005253 ORTHO05D006058 1.8e-197 692.6 402 100.0
MBI14_g08108_MAGBIO Magnolia biondii HOM05D005253 ORTHO05D006058 1.0e-35 155.2 366 36.6
ATR0691G224 Amborella trichopoda HOM05D005253 ORTHO05D006058 1.5e-29 134.8 352 30.4
Gohir.A09G243900 Gossypium hirsutum HOM05D005253 ORTHO05D006058 1.8e-27 127.9 346 33.2
PSO017G7367 Papaver somniferum HOM05D005253 ORTHO05D006058 5.2e-27 126.3 347 31.4
Gorai.006G268700 Gossypium raimondii HOM05D005253 ORTHO05D006058 8.9e-27 125.6 342 36.8
PSO478G2666 Papaver somniferum HOM05D005253 ORTHO05D006058 2.6e-26 124.0 353 36.0
Prupe.5G210000 Prunus persica HOM05D005253 ORTHO05D006058 3.4e-26 123.6 373 35.4
Glyma.17G081700 Glycine max HOM05D005253 ORTHO05D006058 2.2e-25 120.9 340 32.6
Zm00001eb380690 Zea mays HOM05D005253 ORTHO05D006058 2.2e-25 120.9 362 29.8
Dinv38642 Davidia involucrata HOM05D005253 ORTHO05D006058 2.9e-25 120.6 372 34.1
GSVIVG01008154001 Vitis vinifera HOM05D005253 ORTHO05D006058 3.7e-25 120.2 349 38.7
Zm00001eb280850 Zea mays HOM05D005253 ORTHO05D006058 4.9e-25 119.8 346 31.5
Glyma.05G018200 Glycine max HOM05D005253 ORTHO05D006058 1.8e-24 117.9 359 32.0
PSO063G5368 Papaver somniferum HOM05D005253 ORTHO05D006058 1.8e-24 117.9 375 33.1
TAR371G0033 Trochodendron aralioides HOM05D005253 ORTHO05D006058 1.2e-23 115.2 275 39.6
PSO782G3834 Papaver somniferum HOM05D005253 ORTHO05D006058 1.6e-23 114.8 373 28.7
CDE05G1733 Ceratophyllum demersum HOM05D005253 ORTHO05D006058 2.0e-23 114.4 349 30.7
Hund09956 Selenicereus undatus HOM05D005253 ORTHO05D006058 2.7e-23 114.0 375 32.3
Rhsim08G0142100 Rhododendron simsii HOM05D005253 ORTHO05D006058 7.8e-23 112.5 372 28.5
TWI60G1362 Tripterygium wilfordii HOM05D005253 ORTHO05D006058 1.3e-22 111.7 378 31.7
Thhalv10014100m.g Eutrema salsugineum HOM05D005253 ORTHO05D006058 2.3e-22 110.9 344 28.2
Ciclev10020920m.g Citrus clementina HOM05D005253 ORTHO05D006058 3.0e-22 110.5 378 32.0
Duzib068G0534 Durio zibethinus HOM05D005253 ORTHO05D006058 8.6e-22 109.0 367 33.0
Cfa017731 Carpinus fangiana HOM05D005253 ORTHO05D006058 1.1e-21 108.6 373 32.4
Solyc03g114760.3 Solanum lycopersicum HOM05D005253 ORTHO05D006058 1.1e-21 108.6 363 32.8
Sopen03g033840 Solanum pennellii HOM05D005253 ORTHO05D006058 1.1e-21 108.6 363 34.4
RcHm_v2.0_Chr7g0183731 Rosa chinensis HOM05D005253 ORTHO05D006058 1.9e-21 107.8 334 34.7
Dinv17459 Davidia involucrata HOM05D005253 ORTHO05D006058 5.6e-21 106.3 302 35.8
FAN08G1625 Fragaria x ananassa HOM05D005253 ORTHO05D006058 5.6e-21 106.3 356 34.6
TPR.G2086 Trifolium pratense HOM05D005253 ORTHO05D006058 5.6e-21 106.3 349 26.9
Gohir.D09G244600 Gossypium hirsutum HOM05D005253 ORTHO05D006058 7.3e-21 105.9 342 31.3
Aqoxy3G03749 Aquilegia oxysepala HOM05D005253 ORTHO05D006058 9.5e-21 105.5 389 27.8
FAN13G1214 Fragaria x ananassa HOM05D005253 ORTHO05D006058 9.5e-21 105.5 350 34.0
FAN18G4071 Fragaria x ananassa HOM05D005253 ORTHO05D006058 9.5e-21 105.5 352 34.4
Nitab4.5_0002467g0110 Nicotiana tabacum HOM05D005253 ORTHO05D006058 9.5e-21 105.5 363 32.2
Manes.06G080800 Manihot esculenta HOM05D005253 ORTHO05D006058 1.2e-20 105.1 355 33.0
FvH4_5g13401 Fragaria vesca HOM05D005253 ORTHO05D006058 1.6e-20 104.8 352 34.1
Medtr4g109960 Medicago truncatula HOM05D005253 ORTHO05D006058 1.6e-20 104.8 363 24.2
Potri.004G107000 Populus trichocarpa HOM05D005253 ORTHO05D006058 1.6e-20 104.8 274 33.2
Haze_18511 Corylus avellana HOM05D005253 ORTHO05D006058 2.8e-20 104.0 374 31.3
Peaxi162Scf00017g03254 Petunia axillaris HOM05D005253 ORTHO05D006058 2.8e-20 104.0 385 32.5
Duzib205G1609 Durio zibethinus HOM05D005253 ORTHO05D006058 3.6e-20 103.6 259 30.9
Lalb_Chr13g0302681 Lupinus albus HOM05D005253 ORTHO05D006058 3.6e-20 103.6 351 30.5
Gohir.D07G063700 Gossypium hirsutum HOM05D005253 ORTHO05D006058 4.7e-20 103.2 355 29.3
Nitab4.5_0005994g0050 Nicotiana tabacum HOM05D005253 ORTHO05D006058 4.7e-20 103.2 368 33.4
Glyma.04G159100 Glycine max HOM05D005253 ORTHO05D006058 8.0e-20 102.4 348 25.3
Lsat_1_v5_gn_5_23380 Lactuca sativa HOM05D005253 ORTHO05D006058 8.0e-20 102.4 371 31.5
MD14G1216600 Malus domestica HOM05D005253 ORTHO05D006058 1.1e-19 102.1 348 31.6
MSTRG.9581 Avicennia marina HOM05D005253 ORTHO05D006058 2.3e-19 100.9 372 32.3
CSS0036905 Camellia sinensis var. sinensis HOM05D005253 ORTHO05D006058 2.3e-19 100.9 302 36.4
PGSC0003DMG400024524 Solanum tuberosum HOM05D005253 ORTHO05D006058 2.3e-19 100.9 364 33.5
AL6G18490 Arabidopsis lyrata HOM05D005253 ORTHO05D006058 3.1e-19 100.5 357 28.6
Lj4g0025893 Lotus japonicus HOM05D005253 ORTHO05D006058 4.0e-19 100.1 360 28.6
Nitab4.5_0002041g0040 Nicotiana tabacum HOM05D005253 ORTHO05D006058 5.2e-19 99.8 362 31.2
SGA_v2.0_scaffold65G22104 Striga asiatica HOM05D005253 ORTHO05D006058 5.2e-19 99.8 378 29.6
TWI81G0215 Tripterygium wilfordii HOM05D005253 ORTHO05D006058 5.2e-19 99.8 339 32.4
vmacro17641 Vaccinium macrocarpon HOM05D005253 ORTHO05D006058 6.8e-19 99.4 402 27.4
THA.LOC104818357 Tarenaya hassleriana HOM05D005253 ORTHO05D006058 8.9e-19 99.0 357 30.3
MD06G1205700 Malus domestica HOM05D005253 ORTHO05D006058 1.5e-18 98.2 348 32.8
arahy.Tifrunner.gnm1.ann1.TSF3K2 Arachis hypogaea HOM05D005253 ORTHO05D006058 2.0e-18 97.8 335 30.7
CDE02G3817 Ceratophyllum demersum HOM05D005253 ORTHO05D006058 2.6e-18 97.4 350 27.4
EL10Ac5g11189 Beta vulgaris HOM05D005253 ORTHO05D006058 3.4e-18 97.1 373 31.4
CARHR205070 Cardamine hirsuta HOM05D005253 ORTHO05D006058 3.4e-18 97.1 345 28.7
Ah.02g114240 Amaranthus hybridus HOM05D005253 ORTHO05D006058 5.8e-18 96.3 331 32.6
TPR.G1989 Trifolium pratense HOM05D005253 ORTHO05D006058 5.8e-18 96.3 371 25.6
ECA246G0831 Erigeron canadensis HOM05D005253 ORTHO05D006058 7.5e-18 95.9 370 29.7
Sc04g0003900 Simmondsia chinensis HOM05D005253 ORTHO05D006058 7.5e-18 95.9 347 25.9
VMungo1215G3162 Vigna mungo HOM05D005253 ORTHO05D006058 9.8e-18 95.5 334 32.6
HPP92_019902 Vanilla planifolia HOM05D005253 ORTHO05D006058 1.7e-17 94.7 345 27.2
Oeu014427.1 Olea europaea HOM05D005253 ORTHO05D006058 4.9e-17 93.2 371 32.1
BraA10t44904Z Brassica rapa HOM05D005253 ORTHO05D006058 6.4e-17 92.8 335 26.6
Migut.D01615 Erythranthe guttata HOM05D005253 ORTHO05D006058 6.4e-17 92.8 369 33.3
AT5G08120 Arabidopsis thaliana HOM05D005253 ORTHO05D006058 8.3e-17 92.4 357 28.3
AUR62039667 Chenopodium quinoa HOM05D005253 ORTHO05D006058 8.3e-17 92.4 360 32.2
SHI17413 Sapria himalayana HOM05D005253 ORTHO05D006058 8.3e-17 92.4 346 29.2
Gohir.A07G058832 Gossypium hirsutum HOM05D005253 ORTHO05D006058 1.4e-16 91.7 354 29.7
arahy.Tifrunner.gnm1.ann1.399KXC Arachis hypogaea HOM05D005253 ORTHO05D006058 1.9e-16 91.3 335 30.4
Lj9C438G4 Lonicera japonica HOM05D005253 ORTHO05D006058 3.2e-16 90.5 285 36.1
Sed0023471 Sechium edule HOM05D005253 ORTHO05D006058 5.4e-16 89.7 355 30.4
Gorai.001G067300 Gossypium raimondii HOM05D005253 ORTHO05D006058 1.2e-15 88.6 355 27.0
AagrBONN_evm.TU.Sc2ySwM_368.1809 Anthoceros agrestis HOM05D025852 ORTHO05D031190 1.6e-15 88.2 388 26.8
HPP92_015550 Vanilla planifolia HOM05D005253 ORTHO05D006058 2.0e-15 87.8 357 24.4
Phvul.003G182200 Phaseolus vulgaris HOM05D005253 ORTHO05D006058 2.7e-15 87.4 356 28.7
BcaB08g37285 Brassica carinata HOM05D005253 ORTHO05D006058 6.0e-15 86.3 335 25.7
Cc04_g08280 Coffea canephora HOM05D005253 ORTHO05D006058 1.0e-14 85.5 342 26.6
Peaxi162Scf00365g00114 Petunia axillaris HOM05D005253 ORTHO05D006058 1.0e-14 85.5 361 26.3
Hund02544 Selenicereus undatus HOM05D005253 ORTHO05D006058 1.0e-14 85.5 353 30.0
C09p68830 Brassica napus HOM05D005253 ORTHO05D006058 1.3e-14 85.1 335 25.4
Lj1g0009577 Lotus japonicus HOM05D005253 ORTHO05D006058 1.3e-14 85.1 339 31.3
Nn3g17535 Nelumbo nucifera HOM05D005253 ORTHO05D006058 1.3e-14 85.1 351 29.3
Prupe.8G074000 Prunus persica HOM05D005253 ORTHO05D006058 1.3e-14 85.1 205 33.2
Nitab4.5_0001797g0020 Nicotiana tabacum HOM05D005253 ORTHO05D006058 1.7e-14 84.7 236 34.3
SalBow7G2030 Salvia bowleyana HOM05D005253 ORTHO05D006058 3.0e-14 84.0 383 25.3
Manes.14G089100 Manihot esculenta HOM05D005253 ORTHO05D006058 5.0e-14 83.2 350 29.4
CANSAT80G0823 Cannabis sativa HOM05D005253 ORTHO05D006058 6.6e-14 82.8 376 25.5
HanXRQChr02g0051141 Helianthus annuus HOM05D005253 ORTHO05D006058 8.6e-14 82.4 270 32.2
Os06g0284800 Oryza sativa ssp. japonica HOM05D005253 ORTHO05D006058 1.5e-13 81.6 334 27.2
Ah.11g047400 Amaranthus hybridus HOM05D005253 ORTHO05D006058 5.6e-13 79.7 333 28.5
HanXRQChr05g0157441 Helianthus annuus HOM05D005253 ORTHO05D006058 7.3e-13 79.3 265 29.1
Cpa.g.sc3.232 Carica papaya HOM05D005253 ORTHO05D006058 9.5e-13 79.0 340 28.8
unitig_578.g15937 Utricularia gibba HOM05D005253 ORTHO05D006058 2.1e-12 77.8 381 28.1
A10p28550 Brassica napus HOM05D005253 ORTHO05D006058 4.7e-12 76.6 335 24.5
SMO134G0145 Selaginella moellendorffii HOM05D025852 ORTHO05D006058 8.1e-12 75.9 345 27.2
CAN.G982.39 Capsicum annuum HOM05D005253 ORTHO05D006058 1.1e-11 75.5 442 27.6
DCAR_010175 Daucus carota HOM05D005253 ORTHO05D006058 1.4e-11 75.1 272 26.8
unitig_8.g4498 Utricularia gibba HOM05D005253 ORTHO05D006058 1.4e-11 75.1 387 30.7
Eucgr.K02550 Eucalyptus grandis HOM05D005253 ORTHO05D006058 3.1e-11 73.9 206 38.3
BolC9t59630H Brassica oleracea HOM05D005253 ORTHO05D006058 4.0e-11 73.6 335 24.5
PGR044G0085 Punica granatum HOM05D005253 ORTHO05D006058 6.8e-11 72.8 370 30.3
Hma1.2p1_0060F.1_g032740 Hydrangea macrophylla HOM05D005253 ORTHO05D006058 8.9e-11 72.4 314 26.1
COL.COLO4_27496 Corchorus olitorius HOM05D005253 ORTHO05D006058 5.8e-10 69.7 356 25.0
Carub.0006s0700 Capsella rubella HOM05D005253 ORTHO05D006058 9.9e-10 68.9 341 29.3
Ca_21755_v3 Cicer arietinum L. HOM05D005253 ORTHO05D006058 9.9e-10 68.9 364 23.1
Atru.chr4.1592 Acer truncatum HOM05D005253 ORTHO05D006058 3.7e-09 67.0 170 28.8
AUR62032138 Chenopodium quinoa HOM05D005253 ORTHO05D006058 1.1e-08 65.5 307 32.6
Aqoxy3G00549 Aquilegia oxysepala HOM05D005253 ORTHO05D006058 3.2e-08 63.9 354 23.7
ClCG04G011560 Citrullus lanatus HOM05D005253 ORTHO05D006058 5.4e-08 63.2 345 22.6
MELO3C002054.2 Cucumis melo HOM05D005253 ORTHO05D006058 5.4e-08 63.2 158 29.7
CsaV3_1G006260 Cucumis sativus L. HOM05D005253 ORTHO05D006058 7.1e-08 62.8 158 29.7
Sp6g34840 Schrenkiella parvula HOM05D005253 ORTHO05D006058 7.1e-08 62.8 371 22.1
Thecc.03G108400 Theobroma cacao HOM05D005253 ORTHO05D006058 7.1e-08 62.8 238 32.4
QL10p020742 Quercus lobata HOM05D005253 ORTHO05D006058 2.7e-07 60.8 485 26.4
Pp3c1_41070 Physcomitrium patens HOM05D025852 ORTHO05D031190 7.8e-07 59.3 418 22.2
Pp3c17_20470 Physcomitrium patens HOM05D025852 ORTHO05D031190 1.0e-06 58.9 428 20.3
Aa31LG3G18420 Aethionema arabicum HOM05D005253 ORTHO05D006058 2.3e-06 57.8 344 21.8
BcaB08g37286 Brassica carinata HOM05D005460 ORTHO05D006058 5.1e-06 56.6 207 28.5
Os09g0476000 Oryza sativa ssp. japonica HOM05D005253 ORTHO05D006058 6.6e-06 56.2 205 26.8
Nn4g23537 Nelumbo nucifera HOM05D005253 ORTHO05D006058 8.6e-06 55.8 55 47.3


User provided reference genes

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