Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_36307 Sequoiadendron giganteum HOM05D003561 ORTHO05D004351 0.0e+00 1782.3 882 100.0
SEGI_28319 Sequoiadendron giganteum HOM05D003561 ORTHO05D004351 0.0e+00 1645.2 840 97.6
TAR381G0090 Trochodendron aralioides HOM05D003561 ORTHO05D004351 9.1e-234 814.3 886 50.8
Nn5g30480 Nelumbo nucifera HOM05D003561 ORTHO05D004351 1.7e-224 783.5 884 49.9
Aqoxy6G02799 Aquilegia oxysepala HOM05D003561 ORTHO05D004351 1.5e-220 770.4 882 49.8
PSO675G3219 Papaver somniferum HOM05D003561 ORTHO05D004351 4.4e-220 768.8 890 49.4
PSO541G3211 Papaver somniferum HOM05D003561 ORTHO05D004351 9.8e-220 767.7 890 49.0
QL11p032306 Quercus lobata HOM05D003561 ORTHO05D004351 4.7e-214 748.8 890 48.2
Dinv15779 Davidia involucrata HOM05D003561 ORTHO05D004351 3.0e-213 746.1 900 47.2
Gohir.A03G184800 Gossypium hirsutum HOM05D003561 ORTHO05D004351 8.8e-213 744.6 886 47.9
Thecc.02G112400 Theobroma cacao HOM05D003561 ORTHO05D004351 2.0e-212 743.4 886 48.4
Gorai.005G233700 Gossypium raimondii HOM05D003561 ORTHO05D004351 1.7e-211 740.3 886 47.6
Cfa004615 Carpinus fangiana HOM05D003561 ORTHO05D004351 2.2e-211 740.0 887 47.7
Duzib132G1062 Durio zibethinus HOM05D003561 ORTHO05D004351 3.7e-211 739.2 885 47.9
Actinidia27978 Actinidia chinensis HOM05D003561 ORTHO05D004351 2.4e-210 736.5 884 47.4
Pp3c22_17660 Physcomitrium patens HOM05D003561 ORTHO05D004351 2.4e-210 736.5 961 46.2
CSS0023905 Camellia sinensis var. sinensis HOM05D003561 ORTHO05D004351 3.1e-210 736.1 885 47.1
Rhsim05G0089400 Rhododendron simsii HOM05D003561 ORTHO05D004351 1.6e-209 733.8 885 46.2
Gohir.D02G206300 Gossypium hirsutum HOM05D003561 ORTHO05D004351 3.5e-209 732.6 886 47.4
Cfa004087 Carpinus fangiana HOM05D003561 ORTHO05D004351 1.0e-208 731.1 886 46.4
Haze_15327 Corylus avellana HOM05D003561 ORTHO05D004351 2.9e-208 729.6 902 46.3
MSTRG.16699 Avicennia marina HOM05D003561 ORTHO05D004351 6.6e-208 728.4 888 47.1
Oeu011151.1 Olea europaea HOM05D003561 ORTHO05D004351 6.6e-208 728.4 889 46.0
RcHm_v2.0_Chr6g0254331 Rosa chinensis HOM05D003561 ORTHO05D004351 1.9e-207 726.9 887 46.8
Potri.009G092500 Populus trichocarpa HOM05D003561 ORTHO05D004351 4.7e-206 722.2 891 46.9
Rhsim10G0161700 Rhododendron simsii HOM05D003561 ORTHO05D004351 6.1e-206 721.8 885 46.6
arahy.Tifrunner.gnm1.ann1.Q24X8K Arachis hypogaea HOM05D003561 ORTHO05D004351 8.0e-206 721.5 881 47.6
Atru.chr5.2428 Acer truncatum HOM05D003561 ORTHO05D004351 1.4e-205 720.7 890 46.9
Nitab4.5_0001480g0050 Nicotiana tabacum HOM05D003561 ORTHO05D004351 1.4e-205 720.7 886 45.8
Sabra09G0071200 Salix brachista HOM05D003561 ORTHO05D004351 1.8e-205 720.3 886 46.0
Migut.B00411 Erythranthe guttata HOM05D003561 ORTHO05D004351 5.2e-205 718.8 889 46.6
MD05G1093800 Malus domestica HOM05D003561 ORTHO05D004351 5.2e-205 718.8 893 46.4
Psat6g216560 Pisum sativum HOM05D003561 ORTHO05D004351 5.2e-205 718.8 886 47.7
CiPaw.05G014100 Carya illinoinensis HOM05D003561 ORTHO05D004351 6.8e-205 718.4 848 48.0
FAN24G1860 Fragaria x ananassa HOM05D003561 ORTHO05D004351 6.8e-205 718.4 887 46.0
Nitab4.5_0010275g0030 Nicotiana tabacum HOM05D003561 ORTHO05D004351 5.7e-204 715.3 871 46.3
Pp3c18_4410 Physcomitrium patens HOM05D003561 ORTHO05D004351 5.7e-204 715.3 950 45.2
Solyc01g107360.4 Solanum lycopersicum HOM05D003561 ORTHO05D004351 5.7e-204 715.3 885 45.8
Medtr1g106905 Medicago truncatula HOM05D003561 ORTHO05D004351 9.8e-204 714.5 881 46.7
FAN15G0682 Fragaria x ananassa HOM05D003561 ORTHO05D004351 2.9e-203 713.0 887 45.9
Ciclev10027851m.g Citrus clementina HOM05D003561 ORTHO05D004351 3.7e-203 712.6 886 45.1
Peaxi162Scf00016g02531 Petunia axillaris HOM05D003561 ORTHO05D004351 4.9e-203 712.2 888 45.7
Prupe.8G138700 Prunus persica HOM05D003561 ORTHO05D004351 6.4e-203 711.8 824 47.5
Sopen01g049600 Solanum pennellii HOM05D003561 ORTHO05D004351 6.4e-203 711.8 889 45.6
Lj5g0023418 Lotus japonicus HOM05D003561 ORTHO05D004351 1.1e-202 711.1 881 47.3
Hund06710 Selenicereus undatus HOM05D003561 ORTHO05D004351 1.1e-202 711.1 877 46.1
TWI75G1561 Tripterygium wilfordii HOM05D003561 ORTHO05D004351 1.8e-202 710.3 880 46.8
Ca_11052_v3 Cicer arietinum L. HOM05D003561 ORTHO05D004351 3.2e-202 709.5 873 48.2
Manes.10G073266 Manihot esculenta HOM05D003561 ORTHO05D004351 3.2e-202 709.5 885 45.8
FAN27G2112 Fragaria x ananassa HOM05D003561 ORTHO05D004351 7.0e-202 708.4 887 45.3
Thecc.01G067200 Theobroma cacao HOM05D003561 ORTHO05D004351 9.2e-202 708.0 893 45.9
CiPaw.01G008500 Carya illinoinensis HOM05D003561 ORTHO05D004351 2.0e-201 706.8 886 44.6
Cc02_g19520 Coffea canephora HOM05D003561 ORTHO05D004351 2.0e-201 706.8 891 45.9
Potri.001G297600 Populus trichocarpa HOM05D003561 ORTHO05D004351 2.7e-201 706.4 895 45.3
AUR62027366 Chenopodium quinoa HOM05D003561 ORTHO05D004351 5.9e-201 705.3 888 45.5
Lalb_Chr02g0145171 Lupinus albus HOM05D003561 ORTHO05D004351 5.9e-201 705.3 885 46.3
VMungo0720G2973 Vigna mungo HOM05D003561 ORTHO05D004351 1.7e-200 703.7 895 46.8
FvH4_2g04670 Fragaria vesca HOM05D003561 ORTHO05D004351 2.3e-200 703.4 887 45.3
PGSC0003DMG400025758 Solanum tuberosum HOM05D003561 ORTHO05D004351 5.0e-200 702.2 863 46.1
GSVIVG01037885001 Vitis vinifera HOM05D003561 ORTHO05D004351 5.0e-200 702.2 887 45.8
Atru.chr3.226 Acer truncatum HOM05D003561 ORTHO05D004351 6.6e-200 701.8 874 45.3
arahy.Tifrunner.gnm1.ann1.IMHW03 Arachis hypogaea HOM05D003561 ORTHO05D004351 8.6e-200 701.4 913 45.6
Lsat_1_v5_gn_7_85901 Lactuca sativa HOM05D003561 ORTHO05D004351 3.3e-199 699.5 889 45.7
SalBow6G5634 Salvia bowleyana HOM05D003561 ORTHO05D004351 9.5e-199 698.0 939 43.3
Phvul.007G042500 Phaseolus vulgaris HOM05D003561 ORTHO05D004351 2.8e-198 696.4 863 46.9
COL.COLO4_32560 Corchorus olitorius HOM05D003561 ORTHO05D004351 4.7e-198 695.7 887 45.0
TPR.G27110 Trifolium pratense HOM05D003561 ORTHO05D004351 4.0e-197 692.6 877 47.1
Glyma.20G131200 Glycine max HOM05D003561 ORTHO05D004351 5.2e-197 692.2 883 46.2
COL.COLO4_11519 Corchorus olitorius HOM05D003561 ORTHO05D004351 6.8e-197 691.8 907 45.4
Actinidia12002 Actinidia chinensis HOM05D003561 ORTHO05D004351 8.9e-197 691.4 885 44.2
Eucgr.G01293 Eucalyptus grandis HOM05D003561 ORTHO05D004351 2.0e-196 690.3 885 45.1
Potri.007G051500 Populus trichocarpa HOM05D003561 ORTHO05D004351 2.6e-196 689.9 871 45.4
PGR042G0884 Punica granatum HOM05D003561 ORTHO05D004351 2.6e-196 689.9 885 44.7
CANSAT01G2799 Cannabis sativa HOM05D003561 ORTHO05D004351 1.7e-195 687.2 871 45.4
CSS0044154 Camellia sinensis var. sinensis HOM05D003561 ORTHO05D004351 2.9e-195 686.4 870 44.8
Gohir.D03G026700 Gossypium hirsutum HOM05D003561 ORTHO05D004351 8.3e-195 684.9 883 45.0
Hma1.2p1_0239F.1_g099850 Hydrangea macrophylla HOM05D003561 ORTHO05D004351 1.4e-194 684.1 888 44.1
GSVIVG01000167001 Vitis vinifera HOM05D003561 ORTHO05D004351 1.4e-194 684.1 884 44.1
SGA_v2.0_scaffold225G43001 Striga asiatica HOM05D003561 ORTHO05D004351 5.4e-194 682.2 913 43.8
Duzib147G0573 Durio zibethinus HOM05D003561 ORTHO05D004351 7.0e-194 681.8 882 44.3
Gorai.003G028400 Gossypium raimondii HOM05D003561 ORTHO05D004351 4.6e-193 679.1 883 44.4
Gohir.A02G153700 Gossypium hirsutum HOM05D003561 ORTHO05D004351 8.6e-192 674.9 883 44.5
ECA236G4994 Erigeron canadensis HOM05D003561 ORTHO05D004351 1.2e-190 671.0 872 44.7
HanXRQChr04g0128551 Helianthus annuus HOM05D003561 ORTHO05D004351 1.2e-190 671.0 885 44.4
ECA238G3157 Erigeron canadensis HOM05D003561 ORTHO05D004351 2.8e-190 669.8 876 43.4
Lj7C86G5 Lonicera japonica HOM05D003561 ORTHO05D004351 2.8e-190 669.8 873 44.4
Hund29372 Selenicereus undatus HOM05D003561 ORTHO05D004351 3.6e-190 669.5 890 43.6
Hund29375 Selenicereus undatus HOM05D003561 ORTHO05D004351 4.7e-190 669.1 890 43.6
DCAR_010841 Daucus carota HOM05D003561 ORTHO05D004351 2.3e-189 666.8 864 43.6
Manes.13G115200 Manihot esculenta HOM05D003561 ORTHO05D004351 4.0e-189 666.0 837 44.6
Haze_10212 Corylus avellana HOM05D003561 ORTHO05D004351 3.4e-188 662.9 826 46.9
Ciclev10024935m.g Citrus clementina HOM05D003561 ORTHO05D004351 1.4e-186 657.5 856 44.2
AUR62003959 Chenopodium quinoa HOM05D003561 ORTHO05D004351 3.2e-186 656.4 881 43.9
vmacro19460 Vaccinium macrocarpon HOM05D003561 ORTHO05D004351 5.4e-186 655.6 817 46.6
Rhsim10G0104800 Rhododendron simsii HOM05D003561 ORTHO05D004351 2.7e-185 653.3 864 43.9
Solyc02g064800.3 Solanum lycopersicum HOM05D003561 ORTHO05D004351 7.8e-185 651.7 864 43.4
Sopen02g014910 Solanum pennellii HOM05D003561 ORTHO05D004351 2.3e-184 650.2 887 42.7
Cc07_g06660 Coffea canephora HOM05D003561 ORTHO05D004351 7.3e-183 645.2 877 42.0
Nitab4.5_0000284g0010 Nicotiana tabacum HOM05D003561 ORTHO05D004351 7.3e-183 645.2 887 42.7
CAN.G1482.2 Capsicum annuum HOM05D003561 ORTHO05D004351 1.2e-182 644.4 864 42.7
Glyma.10G259600 Glycine max HOM05D003561 ORTHO05D004351 1.6e-182 644.0 891 44.9
Aa31sc72G40 Aethionema arabicum HOM05D003561 ORTHO05D004351 4.7e-182 642.5 860 45.0
Eucgr.H02268 Eucalyptus grandis HOM05D003561 ORTHO05D004351 4.7e-182 642.5 876 41.9
Lsat_1_v5_gn_2_83541 Lactuca sativa HOM05D003561 ORTHO05D004351 6.2e-182 642.1 852 43.1
RcHm_v2.0_Chr2g0107231 Rosa chinensis HOM05D003561 ORTHO05D004351 1.1e-181 641.3 887 42.8
Ah.03g146260 Amaranthus hybridus HOM05D003561 ORTHO05D004351 3.1e-181 639.8 884 42.1
FAN19G0232 Fragaria x ananassa HOM05D003561 ORTHO05D004351 8.9e-181 638.3 887 43.9
AagrBONN_evm.TU.Sc2ySwM_111.1 Anthoceros agrestis HOM05D003561 ORTHO05D004351 2.0e-180 637.1 773 46.8
Prupe.6G225400 Prunus persica HOM05D003561 ORTHO05D004351 2.0e-180 637.1 891 41.9
PGSC0003DMG400013016 Solanum tuberosum HOM05D003561 ORTHO05D004351 2.6e-180 636.7 864 42.6
Thhalv10024491m.g Eutrema salsugineum HOM05D003561 ORTHO05D004351 4.4e-180 636.0 884 43.2
Lj5A216G104 Lonicera japonica HOM05D003561 ORTHO05D004351 5.8e-180 635.6 837 44.6
FvH4_1g17060 Fragaria vesca HOM05D003561 ORTHO05D004351 2.2e-179 633.6 887 43.6
Hund13924 Selenicereus undatus HOM05D003561 ORTHO05D004351 1.4e-178 630.9 853 42.7
HanXRQChr14g0449611 Helianthus annuus HOM05D003561 ORTHO05D004351 2.4e-178 630.2 857 42.1
Ah.09g232050 Amaranthus hybridus HOM05D003561 ORTHO05D004351 3.2e-178 629.8 836 43.7
MD02G1180800 Malus domestica HOM05D003561 ORTHO05D004351 3.5e-177 626.3 878 41.7
PGR102G2010 Punica granatum HOM05D003561 ORTHO05D004351 3.5e-177 626.3 874 41.8
BraA01t00401Z Brassica rapa HOM05D003561 ORTHO05D004351 4.6e-177 625.9 881 42.5
C01p04490 Brassica napus HOM05D003561 ORTHO05D004351 2.3e-176 623.6 885 43.1
BolC1t00435H Brassica oleracea HOM05D003561 ORTHO05D004351 2.3e-176 623.6 885 43.1
A01p04120 Brassica napus HOM05D003561 ORTHO05D004351 3.9e-176 622.9 881 42.2
BcaNung04991 Brassica carinata HOM05D003561 ORTHO05D004351 5.1e-176 622.5 881 42.5
FAN28G0575 Fragaria x ananassa HOM05D003561 ORTHO05D004351 6.6e-176 622.1 910 42.3
Peaxi162Scf00449g00016 Petunia axillaris HOM05D003561 ORTHO05D004351 1.9e-175 620.5 798 44.9
AUR62031283 Chenopodium quinoa HOM05D003561 ORTHO05D004351 4.3e-175 619.4 775 45.5
SalBow6G0742 Salvia bowleyana HOM05D003561 ORTHO05D004351 7.3e-175 618.6 850 42.8
Nitab4.5_0000604g0020 Nicotiana tabacum HOM05D003561 ORTHO05D004351 2.1e-174 617.1 886 41.8
CARHR242490 Cardamine hirsuta HOM05D003561 ORTHO05D004351 5.2e-173 612.5 883 42.9
FAN26G2049 Fragaria x ananassa HOM05D003561 ORTHO05D004351 2.9e-171 606.7 887 42.4
Sp7g32080 Schrenkiella parvula HOM05D003561 ORTHO05D004351 1.2e-169 601.3 885 42.9
Carub.0007s0608 Capsella rubella HOM05D003561 ORTHO05D004351 3.5e-169 599.7 888 41.4
AUR62038271 Chenopodium quinoa HOM05D003561 ORTHO05D004351 6.0e-169 599.0 881 41.1
AL7G16990 Arabidopsis lyrata HOM05D003561 ORTHO05D004351 8.7e-168 595.1 887 41.9
THA.LOC104819541 Tarenaya hassleriana HOM05D003561 ORTHO05D004351 1.9e-167 594.0 885 40.3
AT4G34280 Arabidopsis thaliana HOM05D003561 ORTHO05D004351 2.4e-162 577.0 888 41.7
Oeu003572.1 Olea europaea HOM05D003561 ORTHO05D004351 1.6e-158 564.3 871 41.0
FAN20G0240 Fragaria x ananassa HOM05D003561 ORTHO05D004351 2.4e-157 560.5 839 41.7
CSS0037584 Camellia sinensis var. sinensis HOM05D003561 ORTHO05D004351 2.3e-152 543.9 766 42.7
RcHm_v2.0_Chr6g0254291 Rosa chinensis HOM05D003561 ORTHO05D004351 8.7e-152 542.0 459 57.3
SMO145G0124 Selaginella moellendorffii HOM05D003561 ORTHO05D004351 3.3e-151 540.0 770 40.0
Dinv30056 Davidia involucrata HOM05D003561 ORTHO05D004351 9.6e-151 538.5 870 38.6
DCAR_001664 Daucus carota HOM05D003561 ORTHO05D004351 2.8e-150 537.0 756 43.0
Rhsim10G0161500 Rhododendron simsii HOM05D003561 ORTHO05D004351 3.5e-145 520.0 883 37.8
EL10Ac6g15669 Beta vulgaris HOM05D003561 ORTHO05D004351 1.1e-141 508.4 886 36.1
PRCOL_00006635 Prasinoderma coloniale HOM05D003561 ORTHO05D004351 1.7e-139 501.1 962 37.1
BcaNung04160 Brassica carinata HOM05D003561 ORTHO05D004351 1.9e-138 497.7 796 39.3
Atru.chr3.215 Acer truncatum HOM05D003561 ORTHO05D004351 2.5e-138 497.3 424 57.5
AagrBONN_evm.TU.Sc2ySwM_340.381 Anthoceros agrestis HOM05D003561 ORTHO05D004351 1.8e-136 491.1 880 37.7
SalBow1G5992 Salvia bowleyana HOM05D003561 ORTHO05D004351 1.0e-128 465.3 439 54.9
vmacro05379 Vaccinium macrocarpon HOM05D003561 ORTHO05D004351 1.8e-125 454.5 683 40.7
SGA_v2.0_scaffold143G35782 Striga asiatica HOM05D003561 ORTHO05D004351 3.1e-125 453.8 430 53.7
RcHm_v2.0_Chr6g0254371 Rosa chinensis HOM05D003561 ORTHO05D004351 3.4e-124 450.3 394 56.6
Cpa.g.sc292.9 Carica papaya HOM05D003561 ORTHO05D004351 1.0e-123 448.7 648 42.0
Rhsim10G0162500 Rhododendron simsii HOM05D003561 ORTHO05D004351 5.5e-114 416.4 405 53.8
Cpa.g.sc6.62 Carica papaya HOM05D003561 ORTHO05D004351 1.2e-113 415.2 319 61.8
Migut.H00379 Erythranthe guttata HOM05D003561 ORTHO05D004351 4.3e-90 337.0 448 43.3
PGSC0003DMG400026677 Solanum tuberosum HOM05D003561 ORTHO05D004351 1.3e-75 288.9 237 59.1
Rhsim05G0089000 Rhododendron simsii HOM05D003561 ORTHO05D000355 4.6e-68 263.8 435 37.0
Cpa.g.sc6.61 Carica papaya HOM05D003561 ORTHO05D004351 3.0e-51 208.0 432 36.8
BcaNung04992 Brassica carinata HOM05D003561 ORTHO05D004351 2.5e-50 204.9 157 64.3
Atru.chr3.214 Acer truncatum HOM05D003561 ORTHO05D004351 1.2e-47 196.1 190 54.7
CSS0044953 Camellia sinensis var. sinensis HOM05D003561 ORTHO05D004351 1.9e-42 178.7 186 49.5
Oeu027122.1 Olea europaea HOM05D003561 ORTHO05D004351 1.6e-41 175.6 123 62.6
Cpa.g.sc3364.1 Carica papaya HOM05D003561 ORTHO05D004351 2.0e-31 142.1 84 76.2
Rhsim10G0161900 Rhododendron simsii HOM05D003561 ORTHO05D000355 7.6e-31 140.2 162 46.9
RcHm_v2.0_Chr6g0254281 Rosa chinensis HOM05D003561 ORTHO05D004351 1.3e-30 139.4 136 56.6
RcHm_v2.0_Chr6g0254361 Rosa chinensis HOM05D003561 ORTHO05D004351 1.6e-28 132.5 150 50.7
BolC2t11906H Brassica oleracea HOM05D003561 ORTHO05D004351 9.7e-26 123.2 157 43.9
BolC3t20255H Brassica oleracea HOM05D003561 ORTHO05D004351 2.2e-25 122.1 157 43.9
BolC9t55360H Brassica oleracea HOM05D003561 ORTHO05D004351 3.7e-25 121.3 157 43.9
C09p44740 Brassica napus HOM05D003561 ORTHO05D004351 4.8e-25 120.9 164 40.9
C02p15790 Brassica napus HOM05D003561 ORTHO05D004351 8.2e-25 120.2 157 43.3
Sc07g0000630 Simmondsia chinensis HOM05D003561 ORTHO05D004351 5.9e-23 114.0 112 51.8
Sc07g0000620 Simmondsia chinensis HOM05D003561 ORTHO05D004351 5.0e-22 110.9 293 27.0
C09p50480 Brassica napus HOM05D003561 ORTHO05D004351 7.4e-18 97.1 96 49.0
QL11p032339 Quercus lobata HOM05D003561 ORTHO05D004351 4.1e-16 91.3 77 58.4
Lj9C47T4 Lonicera japonica HOM05D003561 ORTHO05D004351 9.4e-13 80.1 55 65.5
Lj9C43T3 Lonicera japonica HOM05D003561 ORTHO05D004351 4.7e-12 77.8 55 65.5
Haze_10211 Corylus avellana HOM05D003561 ORTHO05D033939 1.4e-11 76.3 76 48.7
CSS0044993 Camellia sinensis var. sinensis HOM05D003561 ORTHO05D033939 3.0e-11 75.1 85 44.7
Solyc01g067990.1 Solanum lycopersicum HOM05D003561 ORTHO05D004351 2.6e-10 72.0 150 31.3
vmacro19459 Vaccinium macrocarpon HOM05D003561 ORTHO05D033939 5.3e-08 64.3 50 56.0
DCAR_017864 Daucus carota HOM05D003561 ORTHO05D004351 1.2e-07 63.2 65 47.7
Sabra07G0045400 Salix brachista HOM05D003561 ORTHO05D004351 1.7e-06 59.3 79 39.2


User provided reference genes

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