Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_36280 Sequoiadendron giganteum HOM05D000866 ORTHO05D385143 1.0e-117 426.8 215 100.0
SEGI_14250 Sequoiadendron giganteum HOM05D000010 ORTHO05D003912 1.0e-29 134.4 96 71.9
SEGI_40797 Sequoiadendron giganteum HOM05D000866 ORTHO05D000673 1.9e-20 103.6 78 65.4
SEGI_25150 Sequoiadendron giganteum HOM05D003572 ORTHO05D004118 1.6e-11 73.9 64 62.5
Actinidia24743 Actinidia chinensis HOM05D000866 ORTHO05D000673 8.1e-11 71.6 71 47.9
COL.COLO4_30431 Corchorus olitorius HOM05D000866 ORTHO05D000673 1.8e-10 70.5 78 43.6
Sopen12g022490 Solanum pennellii HOM05D000866 ORTHO05D000673 5.3e-10 68.9 78 42.3
PGSC0003DMG400007573 Solanum tuberosum HOM05D000866 ORTHO05D000673 1.2e-09 67.8 74 41.9
Manes.04G129500 Manihot esculenta HOM05D000866 ORTHO05D000673 2.0e-09 67.0 71 46.5
TAR383G1100 Trochodendron aralioides HOM05D000866 ORTHO05D000673 2.0e-09 67.0 71 46.5
Solyc12g044250.2 Solanum lycopersicum HOM05D000866 ORTHO05D000673 2.6e-09 66.6 78 42.3
Ciclev10026933m.g Citrus clementina HOM05D000866 ORTHO05D000673 3.4e-09 66.2 78 42.3
Aqoxy7G03838 Aquilegia oxysepala HOM05D000866 ORTHO05D000673 4.5e-09 65.9 77 44.2
CSS0032401 Camellia sinensis var. sinensis HOM05D000866 ORTHO05D000673 4.5e-09 65.9 71 45.1
Gohir.D05G131000 Gossypium hirsutum HOM05D000866 ORTHO05D000673 4.5e-09 65.9 71 42.3
QL05p021804 Quercus lobata HOM05D000866 ORTHO05D000673 4.5e-09 65.9 71 43.7
SEGI_16794 Sequoiadendron giganteum HOM05D000866 ORTHO05D000673 4.5e-09 65.9 81 43.2
Manes.04G129750 Manihot esculenta HOM05D000866 ORTHO05D000673 7.6e-09 65.1 71 45.1
SEGI_39425 Sequoiadendron giganteum HOM05D000100 ORTHO05D000052 7.6e-09 65.1 41 78.0
CAN.G438.23 Capsicum annuum HOM05D000866 ORTHO05D000673 9.9e-09 64.7 71 43.7
Gohir.A05G131500 Gossypium hirsutum HOM05D000866 ORTHO05D000673 9.9e-09 64.7 71 42.3
Gorai.009G134700 Gossypium raimondii HOM05D000866 ORTHO05D000673 9.9e-09 64.7 70 42.9
Manes.11G037900 Manihot esculenta HOM05D000866 ORTHO05D000673 9.9e-09 64.7 71 45.1
SalBow2G2243 Salvia bowleyana HOM05D000866 ORTHO05D000673 9.9e-09 64.7 71 43.7
SEGI_03374 Sequoiadendron giganteum HOM05D000499 ORTHO05D006980 9.9e-09 64.7 53 60.4
SEGI_15119 Sequoiadendron giganteum HOM05D000866 ORTHO05D000673 9.9e-09 64.7 76 40.8
SEGI_29921 Sequoiadendron giganteum HOM05D000866 ORTHO05D000673 9.9e-09 64.7 76 40.8
PGR102G2584 Punica granatum HOM05D000866 ORTHO05D000673 1.7e-08 63.9 71 46.5
SEGI_35051 Sequoiadendron giganteum HOM05D000866 ORTHO05D000673 2.2e-08 63.5 70 47.1
Eucgr.J02960 Eucalyptus grandis HOM05D000866 ORTHO05D000673 2.9e-08 63.2 71 42.3
Solyc03g120670.3 Solanum lycopersicum HOM05D000866 ORTHO05D000673 2.9e-08 63.2 71 40.8
ATR0315G068 Amborella trichopoda HOM05D000866 ORTHO05D000673 3.8e-08 62.8 76 42.1
CAN.G144.9 Capsicum annuum HOM05D000866 ORTHO05D000673 3.8e-08 62.8 71 42.3
COL.COLO4_30430 Corchorus olitorius HOM05D000866 ORTHO05D000673 3.8e-08 62.8 72 45.8
Nitab4.5_0002859g0080 Nicotiana tabacum HOM05D000866 ORTHO05D000673 3.8e-08 62.8 74 39.2
PGR102G2089 Punica granatum HOM05D000866 ORTHO05D000673 3.8e-08 62.8 71 40.8
Sabra03G0026700 Salix brachista HOM05D000866 ORTHO05D000673 3.8e-08 62.8 71 45.1
AUR62011649 Chenopodium quinoa HOM05D000866 ORTHO05D000673 4.9e-08 62.4 71 40.8
COL.COLO4_30432 Corchorus olitorius HOM05D000866 ORTHO05D000673 4.9e-08 62.4 71 40.8
Lsat_1_v5_gn_5_130860 Lactuca sativa HOM05D000866 ORTHO05D000673 4.9e-08 62.4 76 44.7
Sopen03g039490 Solanum pennellii HOM05D000866 ORTHO05D000673 4.9e-08 62.4 71 40.8
CiPaw.01G236200 Carya illinoinensis HOM05D000866 ORTHO05D000673 6.4e-08 62.0 71 42.3
Dinv38026 Davidia involucrata HOM05D000866 ORTHO05D000673 6.4e-08 62.0 71 43.7
Duzib235G1017 Durio zibethinus HOM05D000866 ORTHO05D000673 6.4e-08 62.0 78 39.7
Migut.D01019 Erythranthe guttata HOM05D000866 ORTHO05D000673 6.4e-08 62.0 71 42.3
HanXRQChr10g0313431 Helianthus annuus HOM05D000866 ORTHO05D000673 6.4e-08 62.0 77 41.6
Nitab4.5_0003418g0040 Nicotiana tabacum HOM05D000866 ORTHO05D000673 6.4e-08 62.0 71 40.8
SGA_v2.0_scaffold4G02006 Striga asiatica HOM05D000866 ORTHO05D000673 6.4e-08 62.0 71 43.7
Actinidia21677 Actinidia chinensis HOM05D000866 ORTHO05D000673 8.4e-08 61.6 71 45.1
Nitab4.5_0001315g0140 Nicotiana tabacum HOM05D000866 ORTHO05D000673 8.4e-08 61.6 71 40.8
CDE02G1928 Ceratophyllum demersum HOM05D000866 ORTHO05D000673 1.1e-07 61.2 71 43.7
AUR62016477 Chenopodium quinoa HOM05D000866 ORTHO05D000673 1.1e-07 61.2 71 39.4
MELO3C024252.2 Cucumis melo HOM05D000866 ORTHO05D000673 1.1e-07 61.2 71 42.3
TPR.G37266 Trifolium pratense HOM05D000866 ORTHO05D000673 1.1e-07 61.2 68 44.1
Aqoxy7G03841 Aquilegia oxysepala HOM05D000866 ORTHO05D000673 1.4e-07 60.8 75 42.7
Cc04_g03090 Coffea canephora HOM05D000866 ORTHO05D000673 1.4e-07 60.8 71 43.7
ECA234G0783 Erigeron canadensis HOM05D000866 ORTHO05D000673 1.4e-07 60.8 76 39.5
Peaxi162Scf00015g00040 Petunia axillaris HOM05D000866 ORTHO05D000673 1.4e-07 60.8 71 39.4
Potri.003G052700 Populus trichocarpa HOM05D000866 ORTHO05D000673 1.4e-07 60.8 71 42.3
Cpa.g.sc586.1 Carica papaya HOM05D000866 ORTHO05D000673 1.9e-07 60.5 78 37.2
ClCG09G001970 Citrullus lanatus HOM05D000866 ORTHO05D000673 1.9e-07 60.5 71 40.8
Haze_16367 Corylus avellana HOM05D000866 ORTHO05D000673 1.9e-07 60.5 71 40.8
MBI01_g07175_MAGBIO Magnolia biondii HOM05D000866 ORTHO05D000673 1.9e-07 60.5 73 39.7
QL05p021809 Quercus lobata HOM05D000866 ORTHO05D000673 1.9e-07 60.5 78 38.5
Thecc.06G091900 Theobroma cacao HOM05D000866 ORTHO05D000673 1.9e-07 60.5 72 43.1
TAR636G0331 Trochodendron aralioides HOM05D000866 ORTHO05D000673 1.9e-07 60.5 71 42.3
TAR636G2241 Trochodendron aralioides HOM05D000866 ORTHO05D000673 1.9e-07 60.5 78 39.7
Aa31LG4G160 Aethionema arabicum HOM05D000866 ORTHO05D000673 2.4e-07 60.1 78 37.2
Ah.01g005540 Amaranthus hybridus HOM05D000866 ORTHO05D000673 2.4e-07 60.1 71 38.0
FAN09G3027 Fragaria x ananassa HOM05D000866 ORTHO05D000673 2.4e-07 60.1 69 42.0
Gohir.D09G081900 Gossypium hirsutum HOM05D000866 ORTHO05D000673 2.4e-07 60.1 72 43.1
Lj9A509T91 Lonicera japonica HOM05D000866 ORTHO05D000673 2.4e-07 60.1 71 40.8
Nn2g11703 Nelumbo nucifera HOM05D000866 ORTHO05D000673 2.4e-07 60.1 71 45.1
Nitab4.5_0001968g0060 Nicotiana tabacum HOM05D000866 ORTHO05D000673 2.4e-07 60.1 74 37.8
vmacro18890 Vaccinium macrocarpon HOM05D000866 ORTHO05D000673 2.4e-07 60.1 74 40.5
Ciclev10026120m.g Citrus clementina HOM05D000866 ORTHO05D000673 3.2e-07 59.7 71 42.3
MELO3C001055.2 Cucumis melo HOM05D000866 ORTHO05D000673 3.2e-07 59.7 71 40.8
FAN02G1042 Fragaria x ananassa HOM05D000866 ORTHO05D000673 3.2e-07 59.7 74 40.5
Gohir.A09G082100 Gossypium hirsutum HOM05D000866 ORTHO05D000673 3.2e-07 59.7 72 41.7
CARHR074640 Cardamine hirsuta HOM05D000866 ORTHO05D000673 4.2e-07 59.3 78 37.2
Cfa002090 Carpinus fangiana HOM05D000866 ORTHO05D000673 4.2e-07 59.3 71 40.8
CiPaw.01G236100 Carya illinoinensis HOM05D000866 ORTHO05D000673 4.2e-07 59.3 78 37.2
CsaV3_7G033390 Cucumis sativus L. HOM05D000866 ORTHO05D000673 4.2e-07 59.3 66 43.9
Eucgr.F03036 Eucalyptus grandis HOM05D000866 ORTHO05D000673 4.2e-07 59.3 71 39.4
FvH4_6g31721 Fragaria vesca HOM05D000866 ORTHO05D000673 4.2e-07 59.3 71 42.3
MD09G1209800 Malus domestica HOM05D000866 ORTHO05D000673 4.2e-07 59.3 69 40.6
SGA_v2.0_scaffold5G02560 Striga asiatica HOM05D000866 ORTHO05D000673 4.2e-07 59.3 78 39.7
Solyc12g044260.2 Solanum lycopersicum HOM05D000866 ORTHO05D000673 5.5e-07 58.9 71 38.0
Sopen12g022500 Solanum pennellii HOM05D000866 ORTHO05D000673 5.5e-07 58.9 71 38.0
MSTRG.11057 Avicennia marina HOM05D000866 ORTHO05D000673 7.1e-07 58.5 71 38.0
Lsat_1_v5_gn_5_130801 Lactuca sativa HOM05D000866 ORTHO05D000673 7.1e-07 58.5 76 42.1
TWI18G0187 Tripterygium wilfordii HOM05D000866 ORTHO05D000673 7.1e-07 58.5 71 40.8
Ca_01128_v3 Cicer arietinum L. HOM05D000866 ORTHO05D000673 9.3e-07 58.2 78 41.0
Ciclev10026118m.g Citrus clementina HOM05D000866 ORTHO05D000673 9.3e-07 58.2 71 42.3
Medtr4g013100 Medicago truncatula HOM05D000866 ORTHO05D000673 9.3e-07 58.2 76 34.2
Rhsim08G0223100 Rhododendron simsii HOM05D000866 ORTHO05D000673 9.3e-07 58.2 71 42.3
RcHm_v2.0_Chr2g0138801 Rosa chinensis HOM05D000866 ORTHO05D000673 9.3e-07 58.2 69 40.6
PGSC0003DMG400007572 Solanum tuberosum HOM05D000866 ORTHO05D000673 9.3e-07 58.2 71 38.0
Ah.01g021590 Amaranthus hybridus HOM05D000866 ORTHO05D000673 1.2e-06 57.8 76 38.2
Ah.01g021600 Amaranthus hybridus HOM05D000866 ORTHO05D000673 1.2e-06 57.8 71 38.0
AL2G41690 Arabidopsis lyrata HOM05D000866 ORTHO05D000673 1.2e-06 57.8 78 37.2
BcaC08g45274 Brassica carinata HOM05D000866 ORTHO05D000673 1.2e-06 57.8 71 36.6
A07p26380 Brassica napus HOM05D000866 ORTHO05D000673 1.2e-06 57.8 78 34.6
C06p28770 Brassica napus HOM05D000866 ORTHO05D000673 1.2e-06 57.8 78 34.6
CSS0019631 Camellia sinensis var. sinensis HOM05D000866 ORTHO05D000673 1.2e-06 57.8 78 39.7
FvH4_6g31711 Fragaria vesca HOM05D000866 ORTHO05D000673 1.2e-06 57.8 69 40.6
FvH4_6g31720 Fragaria vesca HOM05D000866 ORTHO05D000673 1.2e-06 57.8 69 40.6
FAN14G0273 Fragaria x ananassa HOM05D000866 ORTHO05D000673 1.2e-06 57.8 69 40.6
Gorai.006G097500 Gossypium raimondii HOM05D000866 ORTHO05D000673 1.2e-06 57.8 72 41.7
Oeu033505.1 Olea europaea HOM05D000866 ORTHO05D000673 1.2e-06 57.8 71 39.4
Thecc.06G092000 Theobroma cacao HOM05D000866 ORTHO05D000673 1.2e-06 57.8 78 35.9
AT1G79870 Arabidopsis thaliana HOM05D000866 ORTHO05D000673 1.6e-06 57.4 78 37.2
Prupe.3G067700 Prunus persica HOM05D000866 ORTHO05D000673 1.6e-06 57.4 71 42.3
RcHm_v2.0_Chr2g0138891 Rosa chinensis HOM05D000866 ORTHO05D000673 1.6e-06 57.4 69 39.1
MSTRG.11056 Avicennia marina HOM05D000866 ORTHO05D000673 2.1e-06 57.0 71 36.6
PSO478G0549 Papaver somniferum HOM05D000866 ORTHO05D000673 2.1e-06 57.0 68 42.6
MSTRG.22666 Avicennia marina HOM05D000866 ORTHO05D000673 2.7e-06 56.6 71 36.6
BolC6t38047H Brassica oleracea HOM05D000866 ORTHO05D000673 2.7e-06 56.6 78 33.3
BraA07t30282Z Brassica rapa HOM05D000866 ORTHO05D000673 2.7e-06 56.6 78 34.6
Cc04_g03070 Coffea canephora HOM05D000866 ORTHO05D000673 2.7e-06 56.6 71 39.4
Glyma.15G016100 Glycine max HOM05D000866 ORTHO05D000673 2.7e-06 56.6 71 42.3
Lsat_1_v5_gn_5_130781 Lactuca sativa HOM05D000866 ORTHO05D000673 2.7e-06 56.6 76 39.5
Lsat_1_v5_gn_5_130841 Lactuca sativa HOM05D000866 ORTHO05D000673 2.7e-06 56.6 70 44.3
Nn2g11701 Nelumbo nucifera HOM05D000866 ORTHO05D000673 2.7e-06 56.6 71 42.3
Nitab4.5_0002859g0150 Nicotiana tabacum HOM05D000866 ORTHO05D000673 2.7e-06 56.6 78 37.2
SalBow2G0922 Salvia bowleyana HOM05D000866 ORTHO05D000673 2.7e-06 56.6 78 34.6
Cc04_g03080 Coffea canephora HOM05D000866 ORTHO05D000673 3.5e-06 56.2 78 35.9
Haze_16366 Corylus avellana HOM05D000866 ORTHO05D000673 3.5e-06 56.2 71 38.0
MD17G1191700 Malus domestica HOM05D000866 ORTHO05D000673 3.5e-06 56.2 69 40.6
Medtr2g101840 Medicago truncatula HOM05D000866 ORTHO05D000673 3.5e-06 56.2 78 38.5
Medtr4g013090 Medicago truncatula HOM05D000866 ORTHO05D000673 3.5e-06 56.2 78 34.6
Nitab4.5_0001968g0050 Nicotiana tabacum HOM05D000866 ORTHO05D000673 3.5e-06 56.2 78 37.2
QL05p021818 Quercus lobata HOM05D000866 ORTHO05D000673 3.5e-06 56.2 71 42.3
SalBow1G7013 Salvia bowleyana HOM05D000866 ORTHO05D000673 3.5e-06 56.2 78 34.6
Sed0016759 Sechium edule HOM05D000866 ORTHO05D000673 3.5e-06 56.2 71 36.6
VMungo1080G1071 Vigna mungo HOM05D000866 ORTHO05D000673 3.5e-06 56.2 71 42.3
EL10Ac9g22026 Beta vulgaris HOM05D000866 ORTHO05D000673 4.6e-06 55.8 71 36.6
C06p54350 Brassica napus HOM05D000866 ORTHO05D000673 4.6e-06 55.8 78 34.6
BolC6t40446H Brassica oleracea HOM05D000866 ORTHO05D000673 4.6e-06 55.8 78 34.6
DCAR_007568 Daucus carota HOM05D000866 ORTHO05D000673 4.6e-06 55.8 71 42.3
Lj3g0012742 Lotus japonicus HOM05D000866 ORTHO05D000673 4.6e-06 55.8 78 33.3
Manes.04G129400 Manihot esculenta HOM05D000866 ORTHO05D000673 4.6e-06 55.8 74 33.8
PSO063G2240 Papaver somniferum HOM05D000866 ORTHO05D000673 4.6e-06 55.8 68 36.8
Prupe.3G067800 Prunus persica HOM05D000866 ORTHO05D000673 4.6e-06 55.8 71 40.8
RcHm_v2.0_Chr2g0138911 Rosa chinensis HOM05D000866 ORTHO05D000673 4.6e-06 55.8 73 41.1
AagrBONN_evm.TU.Sc2ySwM_368.680 Anthoceros agrestis HOM05D000866 ORTHO05D000673 6.0e-06 55.5 59 44.1
MELO3C024249.2 Cucumis melo HOM05D000866 ORTHO05D000673 6.0e-06 55.5 74 39.2
Dinv38027 Davidia involucrata HOM05D000866 ORTHO05D000673 6.0e-06 55.5 78 37.2
Lalb_Chr25g0279951 Lupinus albus HOM05D000866 ORTHO05D000673 6.0e-06 55.5 87 28.7
Sc10g0007300 Simmondsia chinensis HOM05D000866 ORTHO05D000673 6.0e-06 55.5 71 33.8
HPP92_003933 Vanilla planifolia HOM05D000866 ORTHO05D000673 6.0e-06 55.5 73 39.7
CANSAT35G1446 Cannabis sativa HOM05D000866 ORTHO05D000673 7.9e-06 55.1 69 34.8
Migut.I00945 Erythranthe guttata HOM05D000866 ORTHO05D000673 7.9e-06 55.1 78 34.6
MBI04_g19170_MAGBIO Magnolia biondii HOM05D000866 ORTHO05D000673 7.9e-06 55.1 79 36.7
Phvul.005G168600 Phaseolus vulgaris HOM05D000866 ORTHO05D000673 7.9e-06 55.1 71 40.8
Sp5g35900 Schrenkiella parvula HOM05D000866 ORTHO05D000673 7.9e-06 55.1 78 34.6


User provided reference genes

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