Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_36162 Sequoiadendron giganteum HOM05D001986 ORTHO05D012227 2.8e-111 405.2 197 100.0
SEGI_01694 Sequoiadendron giganteum HOM05D001986 ORTHO05D012227 4.6e-93 344.7 189 91.5
SEGI_17436 Sequoiadendron giganteum HOM05D001986 ORTHO05D012227 2.0e-88 329.3 190 88.9
SEGI_39102 Sequoiadendron giganteum HOM05D001986 ORTHO05D012227 1.5e-80 303.1 180 85.0
SEGI_04127 Sequoiadendron giganteum HOM05D001986 ORTHO05D012227 1.4e-78 296.6 156 94.2
SEGI_30807 Sequoiadendron giganteum HOM05D001986 ORTHO05D012227 3.2e-78 295.4 172 89.0
SEGI_03565 Sequoiadendron giganteum HOM05D001986 ORTHO05D012227 5.4e-78 294.7 180 82.8
SEGI_40792 Sequoiadendron giganteum HOM05D001986 ORTHO05D012227 2.2e-71 272.7 164 82.9
SEGI_30647 Sequoiadendron giganteum HOM05D001986 ORTHO05D012227 4.2e-62 241.9 190 69.5
SEGI_01355 Sequoiadendron giganteum HOM05D001986 ORTHO05D012227 1.6e-61 240.0 139 89.9
SEGI_33962 Sequoiadendron giganteum HOM05D001986 ORTHO05D012227 1.6e-58 229.9 139 79.9
SEGI_09150 Sequoiadendron giganteum HOM05D001986 ORTHO05D012227 6.2e-58 228.0 139 80.6
SEGI_01558 Sequoiadendron giganteum HOM05D001986 ORTHO05D012227 1.9e-54 216.5 170 68.2
SEGI_13198 Sequoiadendron giganteum HOM05D001986 ORTHO05D012227 1.9e-54 216.5 140 79.3
SEGI_16419 Sequoiadendron giganteum HOM05D001986 ORTHO05D002283 3.5e-53 212.2 136 80.9
SEGI_34213 Sequoiadendron giganteum HOM05D001986 ORTHO05D012227 2.9e-47 192.6 166 65.7
SEGI_16305 Sequoiadendron giganteum HOM05D001986 ORTHO05D012227 1.5e-40 170.2 173 57.2
SEGI_34581 Sequoiadendron giganteum HOM05D001986 ORTHO05D012227 3.5e-37 159.1 91 87.9
SEGI_07702 Sequoiadendron giganteum HOM05D001986 ORTHO05D012227 2.5e-35 152.9 161 57.8
SEGI_34626 Sequoiadendron giganteum HOM05D001986 ORTHO05D012227 2.5e-35 152.9 80 92.5
SEGI_31988 Sequoiadendron giganteum HOM05D001986 ORTHO05D012227 1.8e-28 130.2 72 91.7
SEGI_26707 Sequoiadendron giganteum HOM05D001986 ORTHO05D012227 2.4e-25 119.8 69 81.2
THA.LOC104810716 Tarenaya hassleriana HOM05D001986 ORTHO05D002283 3.0e-20 102.8 117 42.7
SEGI_39023 Sequoiadendron giganteum HOM05D001986 ORTHO05D002283 2.8e-18 96.3 134 43.3
Nn2g11423 Nelumbo nucifera HOM05D001986 ORTHO05D002283 5.5e-14 82.0 188 31.4
Ah.10g036470 Amaranthus hybridus HOM05D001986 ORTHO05D002283 1.6e-13 80.5 116 38.8
Pp3c17_17300 Physcomitrium patens HOM05D001986 ORTHO05D012227 2.1e-13 80.1 87 49.4
FAN10G4253 Fragaria x ananassa HOM05D001986 ORTHO05D002283 8.0e-13 78.2 152 31.6
CDE05G1355 Ceratophyllum demersum HOM05D025293 ORTHO05D023580 1.0e-12 77.8 200 31.0
PSO801G0225 Papaver somniferum HOM05D001986 ORTHO05D002283 1.0e-12 77.8 137 32.8
FAN06G0884 Fragaria x ananassa HOM05D001986 ORTHO05D002283 1.4e-12 77.4 101 40.6
FAN03G1061 Fragaria x ananassa HOM05D001986 ORTHO05D002283 1.8e-12 77.0 101 40.6
FvH4_7g24140 Fragaria vesca HOM05D001986 ORTHO05D002283 2.3e-12 76.6 101 40.6
PSO339G2754 Papaver somniferum HOM05D001986 ORTHO05D002283 3.0e-12 76.3 137 32.8
Mapoly0026s0001 Marchantia polymorpha HOM05D001986 ORTHO05D002283 5.2e-12 75.5 92 42.4
Rhsim13G0071200 Rhododendron simsii HOM05D001986 ORTHO05D002283 1.1e-11 74.3 155 33.5
RcHm_v2.0_Chr1g0369571 Rosa chinensis HOM05D001986 ORTHO05D002283 2.0e-11 73.6 147 33.3
TAR623G0550 Trochodendron aralioides HOM05D001986 ORTHO05D002283 4.4e-11 72.4 132 37.9
TAR623G0633 Trochodendron aralioides HOM05D001986 ORTHO05D002283 4.4e-11 72.4 132 37.9
BcaC01g02248 Brassica carinata HOM05D001986 ORTHO05D002283 7.4e-11 71.6 149 30.2
CDE04G2724 Ceratophyllum demersum HOM05D001986 ORTHO05D009285 1.3e-10 70.9 75 45.3
Pp3c14_15450 Physcomitrium patens HOM05D001986 ORTHO05D002283 1.3e-10 70.9 71 50.7
Aqoxy4G02635 Aquilegia oxysepala HOM05D001986 ORTHO05D002283 2.2e-10 70.1 129 34.9
CSS0017587 Camellia sinensis var. sinensis HOM05D001986 ORTHO05D002283 2.2e-10 70.1 100 42.0
Lj6g0026845 Lotus japonicus HOM05D001986 ORTHO05D002283 2.8e-10 69.7 115 37.4
CANSAT56G3655 Cannabis sativa HOM05D001986 ORTHO05D002283 3.7e-10 69.3 112 40.2
FAN01G0590 Fragaria x ananassa HOM05D001986 ORTHO05D012227 3.7e-10 69.3 123 32.5
Pp3c1_4470 Physcomitrium patens HOM05D001986 ORTHO05D002283 3.7e-10 69.3 95 38.9
MSTRG.8318 Avicennia marina HOM05D001986 ORTHO05D002283 4.8e-10 68.9 84 46.4
MD01G1148600 Malus domestica HOM05D001986 ORTHO05D002283 8.2e-10 68.2 101 38.6
Eucgr.J01926 Eucalyptus grandis HOM05D001986 ORTHO05D012227 1.1e-09 67.8 68 52.9
Atru.chr12.3 Acer truncatum HOM05D001986 ORTHO05D002283 1.8e-09 67.0 138 34.8
AagrBONN_evm.TU.Sc2ySwM_344.3460 Anthoceros agrestis HOM05D001986 ORTHO05D002283 1.8e-09 67.0 121 35.5
CDE03G0210 Ceratophyllum demersum HOM05D001986 ORTHO05D002283 1.8e-09 67.0 100 36.0
Manes.07G126800 Manihot esculenta HOM05D001986 ORTHO05D002283 1.8e-09 67.0 80 42.5
Dinv20978 Davidia involucrata HOM05D001986 ORTHO05D002283 2.4e-09 66.6 72 48.6
Manes.02G120700 Manihot esculenta HOM05D001986 ORTHO05D002283 2.4e-09 66.6 112 38.4
MD07G1215600 Malus domestica HOM05D001986 ORTHO05D002283 5.3e-09 65.5 79 41.8
SMO116G0286 Selaginella moellendorffii HOM05D001986 ORTHO05D002283 5.3e-09 65.5 54 53.7
SEGI_17237 Sequoiadendron giganteum HOM05D001986 ORTHO05D002283 7.0e-09 65.1 85 47.1
CANSAT54G2602 Cannabis sativa HOM05D001986 ORTHO05D002283 9.1e-09 64.7 83 39.8
Prupe.2G247500 Prunus persica HOM05D001986 ORTHO05D002283 9.1e-09 64.7 98 37.8
Dinv34413 Davidia involucrata HOM05D001986 ORTHO05D002283 1.2e-08 64.3 67 49.3
TWI53G0575 Tripterygium wilfordii HOM05D001986 ORTHO05D002283 1.6e-08 63.9 68 42.6
GSVIVG01032859001 Vitis vinifera HOM05D001986 ORTHO05D002283 2.0e-08 63.5 80 45.0
Peaxi162Scf00957g00226 Petunia axillaris HOM05D001986 ORTHO05D002283 3.5e-08 62.8 116 32.8
CsaV3_6G016330 Cucumis sativus L. HOM05D001986 ORTHO05D002283 5.9e-08 62.0 124 37.1
Gohir.A06G164250 Gossypium hirsutum HOM05D001986 ORTHO05D002283 5.9e-08 62.0 92 39.1
CiPaw.02G190800 Carya illinoinensis HOM05D001986 ORTHO05D002283 7.7e-08 61.6 104 36.5
Haze_17195 Corylus avellana HOM05D001986 ORTHO05D002283 7.7e-08 61.6 79 40.5
Manes.10G016300 Manihot esculenta HOM05D001986 ORTHO05D002283 1.0e-07 61.2 84 42.9
TWI09G0091 Tripterygium wilfordii HOM05D001986 ORTHO05D002283 1.0e-07 61.2 71 42.3
Cpa.g.sc19.205 Carica papaya HOM05D001986 ORTHO05D002283 1.3e-07 60.8 96 36.5
Migut.N00811 Erythranthe guttata HOM05D001986 ORTHO05D002283 1.7e-07 60.5 131 34.4
Duzib114G0515 Durio zibethinus HOM05D001986 ORTHO05D002283 2.2e-07 60.1 91 41.8
SMO367G1125 Selaginella moellendorffii HOM05D001986 ORTHO05D024961 2.2e-07 60.1 56 53.6
TPR.G21163 Trifolium pratense HOM05D001986 ORTHO05D002283 2.2e-07 60.1 118 33.9
MELO3C025863.2 Cucumis melo HOM05D001986 ORTHO05D002283 2.9e-07 59.7 127 34.6
Dinv21027 Davidia involucrata HOM05D001986 ORTHO05D002283 2.9e-07 59.7 65 47.7
QL01p037599 Quercus lobata HOM05D001986 ORTHO05D002283 2.9e-07 59.7 138 34.1
C01p06630 Brassica napus HOM05D001903 ORTHO05D001847 3.8e-07 59.3 96 34.4
Duzib150G0302 Durio zibethinus HOM05D001986 ORTHO05D002283 3.8e-07 59.3 122 35.2
HanXRQChr05g0135741 Helianthus annuus HOM05D001986 ORTHO05D002283 5.0e-07 58.9 93 33.3
Manes.01G163200 Manihot esculenta HOM05D001986 ORTHO05D002283 5.0e-07 58.9 59 49.2
Rhsim01G0235800 Rhododendron simsii HOM05D001986 ORTHO05D002283 5.0e-07 58.9 87 40.2
unitig_60.g25680 Utricularia gibba HOM05D001986 ORTHO05D002283 5.0e-07 58.9 160 30.0
ATR0618G436 Amborella trichopoda HOM05D001986 ORTHO05D002283 6.5e-07 58.5 67 47.8
DCAR_011796 Daucus carota HOM05D001986 ORTHO05D002283 6.5e-07 58.5 64 46.9
Nn2g13657 Nelumbo nucifera HOM05D001986 ORTHO05D002283 6.5e-07 58.5 122 31.1
Sc12g0000940 Simmondsia chinensis HOM05D001986 ORTHO05D002283 6.5e-07 58.5 87 40.2
unitig_8.g3688 Utricularia gibba HOM05D001986 ORTHO05D002283 6.5e-07 58.5 116 31.9
BcaC07g42456 Brassica carinata HOM05D001986 ORTHO05D002283 8.5e-07 58.2 81 37.0
BcaC09g52017 Brassica carinata HOM05D001903 ORTHO05D001847 8.5e-07 58.2 96 34.4
BolC1t00658H Brassica oleracea HOM05D001903 ORTHO05D001847 8.5e-07 58.2 96 34.4
Medtr3g463450 Medicago truncatula HOM05D001986 ORTHO05D002283 8.5e-07 58.2 119 31.9
Medtr5g082130 Medicago truncatula HOM05D001986 ORTHO05D002283 8.5e-07 58.2 146 28.8
Oeu032748.1 Olea europaea HOM05D001986 ORTHO05D002283 8.5e-07 58.2 59 50.8
Oeu032750.1 Olea europaea HOM05D001986 ORTHO05D002283 8.5e-07 58.2 59 50.8
Sabra10G0147400 Salix brachista HOM05D001986 ORTHO05D002283 8.5e-07 58.2 120 35.8
vmacro14587 Vaccinium macrocarpon HOM05D001986 ORTHO05D002283 8.5e-07 58.2 88 37.5
A01p06030 Brassica napus HOM05D001903 ORTHO05D001847 1.1e-06 57.8 96 34.4
BraA01t00568Z Brassica rapa HOM05D001903 ORTHO05D001847 1.1e-06 57.8 96 34.4
CAN.G394.116 Capsicum annuum HOM05D001986 ORTHO05D002283 1.1e-06 57.8 70 42.9
Cc02_g06800 Coffea canephora HOM05D001986 ORTHO05D002283 1.1e-06 57.8 67 46.3
Lsat_1_v5_gn_5_171460 Lactuca sativa HOM05D001986 ORTHO05D002283 1.1e-06 57.8 122 32.0
AL5G26320 Arabidopsis lyrata HOM05D001986 ORTHO05D002283 1.5e-06 57.4 89 34.8
AUR62001672 Chenopodium quinoa HOM05D001986 ORTHO05D002283 1.5e-06 57.4 79 41.8
AT3G47080 Arabidopsis thaliana HOM05D001986 ORTHO05D002283 1.9e-06 57.0 88 34.1
Thhalv10026052m.g Eutrema salsugineum HOM05D001903 ORTHO05D001847 1.9e-06 57.0 96 33.3
Gohir.A03G050200 Gossypium hirsutum HOM05D001986 ORTHO05D002283 1.9e-06 57.0 60 50.0
Gorai.003G123600 Gossypium raimondii HOM05D001986 ORTHO05D002283 1.9e-06 57.0 60 50.0
TAR369G0464 Trochodendron aralioides HOM05D001986 ORTHO05D002283 1.9e-06 57.0 117 35.9
TAR369G0921 Trochodendron aralioides HOM05D001986 ORTHO05D002283 1.9e-06 57.0 117 35.9
CSS0009497 Camellia sinensis var. sinensis HOM05D001986 ORTHO05D002283 2.5e-06 56.6 59 49.2
CSS0017469 Camellia sinensis var. sinensis HOM05D001986 ORTHO05D002283 2.5e-06 56.6 59 49.2
CiPaw.14G060200 Carya illinoinensis HOM05D001986 ORTHO05D002283 2.5e-06 56.6 102 35.3
HanXRQChr01g0011391 Helianthus annuus HOM05D001986 ORTHO05D002283 2.5e-06 56.6 97 32.0
Sabra09G0031700 Salix brachista HOM05D001986 ORTHO05D002283 2.5e-06 56.6 108 32.4
TWI75G1654 Tripterygium wilfordii HOM05D001986 ORTHO05D002283 2.5e-06 56.6 70 40.0
Gohir.A06G178600 Gossypium hirsutum HOM05D001986 ORTHO05D002283 3.2e-06 56.2 65 44.6
Gohir.D06G174450 Gossypium hirsutum HOM05D001986 ORTHO05D002283 3.2e-06 56.2 83 41.0
Solyc06g076850.3 Solanum lycopersicum HOM05D001986 ORTHO05D002283 3.2e-06 56.2 126 31.7
Sopen06g033240 Solanum pennellii HOM05D001986 ORTHO05D002283 3.2e-06 56.2 126 31.7
Ciclev10028157m.g Citrus clementina HOM05D001986 ORTHO05D002283 4.2e-06 55.8 72 40.3
Ciclev10031175m.g Citrus clementina HOM05D001986 ORTHO05D002283 4.2e-06 55.8 59 49.2
Duzib168G1084 Durio zibethinus HOM05D001986 ORTHO05D002283 4.2e-06 55.8 115 37.4
Eucgr.J01924 Eucalyptus grandis HOM05D001986 ORTHO05D002283 4.2e-06 55.8 60 50.0
VMungo0540G1538 Vigna mungo HOM05D001986 ORTHO05D002283 4.2e-06 55.8 116 32.8
Aa31LG5G6810 Aethionema arabicum HOM05D001986 ORTHO05D002283 5.5e-06 55.5 109 32.1
CARHR007000 Cardamine hirsuta HOM05D001986 ORTHO05D002283 5.5e-06 55.5 126 33.3
CDE02G2111 Ceratophyllum demersum HOM05D001986 ORTHO05D002283 5.5e-06 55.5 129 31.0
DCAR_025675 Daucus carota HOM05D001986 ORTHO05D002283 5.5e-06 55.5 80 38.8
Gorai.010G204100 Gossypium raimondii HOM05D001986 ORTHO05D002283 5.5e-06 55.5 82 40.2
Lj6g0026977 Lotus japonicus HOM05D001986 ORTHO05D002283 5.5e-06 55.5 104 37.5
PSO384G1838 Papaver somniferum HOM05D001986 ORTHO05D002283 5.5e-06 55.5 131 32.8
Potri.010G191600 Populus trichocarpa HOM05D001986 ORTHO05D002283 5.5e-06 55.5 62 48.4
PGSC0003DMG400030441 Solanum tuberosum HOM05D001986 ORTHO05D002283 5.5e-06 55.5 127 31.5
ClCG02G019650 Citrullus lanatus HOM05D001986 ORTHO05D002283 7.2e-06 55.1 86 39.5
MBI14_g09431_MAGBIO Magnolia biondii HOM05D001986 ORTHO05D002283 7.2e-06 55.1 84 41.7
PSO541G1876 Papaver somniferum HOM05D001986 ORTHO05D002283 7.2e-06 55.1 131 32.8
Sp7g30100 Schrenkiella parvula HOM05D001903 ORTHO05D001847 7.2e-06 55.1 96 32.3
TAR633G0772 Trochodendron aralioides HOM05D001986 ORTHO05D002283 7.2e-06 55.1 69 42.0
BNapus_Darmor_BZH_scaffold_82p00010 Brassica napus HOM05D001986 ORTHO05D002283 9.4e-06 54.7 149 26.8
Gohir.D03G117200 Gossypium hirsutum HOM05D001986 ORTHO05D002283 9.4e-06 54.7 60 48.3


User provided reference genes

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