Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_35741 Sequoiadendron giganteum HOM05D004855 ORTHO05D005656 6.7e-54 213.8 108 100.0
ATR0706G105 Amborella trichopoda HOM05D004855 ORTHO05D005656 1.0e-30 136.7 108 65.7
AUR62030671 Chenopodium quinoa HOM05D004855 ORTHO05D005656 3.9e-30 134.8 108 57.4
GSVIVG01033859001 Vitis vinifera HOM05D004855 ORTHO05D005656 3.9e-30 134.8 108 55.6
Nn6g34881 Nelumbo nucifera HOM05D004855 ORTHO05D005656 1.1e-29 133.3 108 55.6
TAR633G0291 Trochodendron aralioides HOM05D004855 ORTHO05D005656 1.5e-29 132.9 108 55.6
CiPaw.09G015100 Carya illinoinensis HOM05D004855 ORTHO05D005656 1.9e-29 132.5 108 58.3
Lsat_1_v5_gn_8_77441 Lactuca sativa HOM05D004855 ORTHO05D005656 1.9e-29 132.5 108 61.1
Dinv21197 Davidia involucrata HOM05D004855 ORTHO05D005656 3.3e-29 131.7 108 56.5
Haze_19625 Corylus avellana HOM05D004855 ORTHO05D005656 4.3e-29 131.3 108 57.4
Atru.chr8.1484 Acer truncatum HOM05D004855 ORTHO05D005656 5.7e-29 131.0 108 54.6
TWI77G0302 Tripterygium wilfordii HOM05D004855 ORTHO05D005656 5.7e-29 131.0 108 56.5
Cfa016620 Carpinus fangiana HOM05D004855 ORTHO05D005656 1.3e-28 129.8 108 56.5
Dinv10926 Davidia involucrata HOM05D004855 ORTHO05D005656 1.7e-28 129.4 108 53.7
Actinidia31268 Actinidia chinensis HOM05D004855 ORTHO05D005656 3.7e-28 128.3 108 56.5
arahy.Tifrunner.gnm1.ann1.DCW42B Arachis hypogaea HOM05D004855 ORTHO05D005656 6.3e-28 127.5 108 54.6
Lalb_Chr25g0288301 Lupinus albus HOM05D004855 ORTHO05D005656 6.3e-28 127.5 108 52.8
PSO384G0979 Papaver somniferum HOM05D004855 ORTHO05D005656 6.3e-28 127.5 108 55.6
MBI18_g09594_MAGBIO Magnolia biondii HOM05D004855 ORTHO05D005656 8.2e-28 127.1 108 50.9
PGR142G1385 Punica granatum HOM05D004855 ORTHO05D005656 8.2e-28 127.1 108 51.9
CDE08G1222 Ceratophyllum demersum HOM05D004855 ORTHO05D005656 1.8e-27 125.9 108 50.9
MD14G1024000 Malus domestica HOM05D004855 ORTHO05D005656 1.8e-27 125.9 108 53.7
CANSAT78G0615 Cannabis sativa HOM05D004855 ORTHO05D005656 2.4e-27 125.6 107 54.2
Ciclev10013171m.g Citrus clementina HOM05D004855 ORTHO05D005656 2.4e-27 125.6 108 55.6
TWI74G1617 Tripterygium wilfordii HOM05D004855 ORTHO05D005656 2.4e-27 125.6 108 54.6
Lj1g0021036 Lotus japonicus HOM05D004855 ORTHO05D005656 4.1e-27 124.8 108 52.8
Manes.09G054300 Manihot esculenta HOM05D004855 ORTHO05D005656 4.1e-27 124.8 108 50.9
CANSAT64G1995 Cannabis sativa HOM05D004855 ORTHO05D005656 5.3e-27 124.4 108 53.7
Thhalv10026639m.g Eutrema salsugineum HOM05D004855 ORTHO05D005656 5.3e-27 124.4 108 54.6
PSO339G3393 Papaver somniferum HOM05D004855 ORTHO05D005656 5.3e-27 124.4 108 54.6
CSS0028852 Camellia sinensis var. sinensis HOM05D004855 ORTHO05D005656 6.9e-27 124.0 108 53.7
Mapoly0013s0016 Marchantia polymorpha HOM05D004855 ORTHO05D005656 9.1e-27 123.6 106 54.7
Os01g0253600 Oryza sativa ssp. japonica HOM05D004855 ORTHO05D005656 9.1e-27 123.6 108 52.8
Cc06_g05940 Coffea canephora HOM05D004855 ORTHO05D005656 1.2e-26 123.2 109 55.0
Eucgr.K02028 Eucalyptus grandis HOM05D004855 ORTHO05D005656 1.2e-26 123.2 108 51.9
MELO3C009479.2 Cucumis melo HOM05D004855 ORTHO05D005656 1.5e-26 122.9 108 52.8
BcaC09g51486 Brassica carinata HOM05D004855 ORTHO05D005656 2.0e-26 122.5 108 52.8
BraA01t01006Z Brassica rapa HOM05D004855 ORTHO05D005656 2.0e-26 122.5 108 52.8
Aa31LG6G1320 Aethionema arabicum HOM05D004855 ORTHO05D005656 3.4e-26 121.7 108 50.9
Ah.10g026130 Amaranthus hybridus HOM05D004855 ORTHO05D005656 3.4e-26 121.7 108 50.9
THA.LOC104804847 Tarenaya hassleriana HOM05D004855 ORTHO05D005656 3.4e-26 121.7 108 52.8
THA.LOC104805250 Tarenaya hassleriana HOM05D004855 ORTHO05D005656 3.4e-26 121.7 108 51.9
AagrBONN_evm.TU.Sc2ySwM_117.343 Anthoceros agrestis HOM05D004855 ORTHO05D005656 4.5e-26 121.3 109 49.5
Sc20g0006340 Simmondsia chinensis HOM05D004855 ORTHO05D005656 4.5e-26 121.3 108 50.9
GSVIVG01000981001 Vitis vinifera HOM05D004855 ORTHO05D005656 4.5e-26 121.3 108 50.0
ClCG10G018900 Citrullus lanatus HOM05D004855 ORTHO05D005656 5.9e-26 120.9 108 53.7
Sed0005547 Sechium edule HOM05D004855 ORTHO05D005656 5.9e-26 120.9 108 51.9
Prupe.7G108800 Prunus persica HOM05D004855 ORTHO05D005656 7.7e-26 120.6 108 50.9
Thecc.05G090600 Theobroma cacao HOM05D004855 ORTHO05D005656 7.7e-26 120.6 108 51.9
Pp3c2_28010 Physcomitrium patens HOM05D004855 ORTHO05D005656 1.0e-25 120.2 108 52.8
Aqoxy4G02764 Aquilegia oxysepala HOM05D004855 ORTHO05D005656 1.3e-25 119.8 108 53.7
CsaV3_3G037350 Cucumis sativus L. HOM05D004855 ORTHO05D005656 1.3e-25 119.8 108 51.9
Gohir.A11G319200 Gossypium hirsutum HOM05D004855 ORTHO05D005656 1.3e-25 119.8 108 51.9
Gohir.D11G338500 Gossypium hirsutum HOM05D004855 ORTHO05D005656 1.3e-25 119.8 108 51.9
Gorai.007G368300 Gossypium raimondii HOM05D004855 ORTHO05D005656 1.3e-25 119.8 108 51.9
Sed0021085 Sechium edule HOM05D004855 ORTHO05D005656 1.3e-25 119.8 108 52.8
AagrBONN_evm.TU.Sc2ySwM_362.2757 Anthoceros agrestis HOM05D004855 ORTHO05D005656 1.7e-25 119.4 109 48.6
AL7G35690 Arabidopsis lyrata HOM05D004855 ORTHO05D005656 2.2e-25 119.0 108 50.9
AT4G18590 Arabidopsis thaliana HOM05D004855 ORTHO05D005656 2.9e-25 118.6 108 50.0
QL04p046696 Quercus lobata HOM05D004855 ORTHO05D005656 2.9e-25 118.6 107 51.4
BcaNung03818 Brassica carinata HOM05D004855 ORTHO05D005656 3.8e-25 118.2 108 50.9
BcaNung06738 Brassica carinata HOM05D004855 ORTHO05D005656 3.8e-25 118.2 108 50.9
CARHR162450 Cardamine hirsuta HOM05D004855 ORTHO05D005656 3.8e-25 118.2 108 50.9
Thhalv10010848m.g Eutrema salsugineum HOM05D004855 ORTHO05D005656 3.8e-25 118.2 108 53.7
Glyma.03G196800 Glycine max HOM05D004855 ORTHO05D005656 3.8e-25 118.2 109 53.2
SGA_v2.0_scaffold31G12906 Striga asiatica HOM05D004855 ORTHO05D005656 6.5e-25 117.5 102 56.9
Duzib106G1994 Durio zibethinus HOM05D004855 ORTHO05D005656 8.5e-25 117.1 108 50.0
Phvul.001G191000 Phaseolus vulgaris HOM05D004855 ORTHO05D005656 8.5e-25 117.1 108 51.9
Potri.006G211900 Populus trichocarpa HOM05D004855 ORTHO05D005656 8.5e-25 117.1 108 50.0
Potri.006G212100 Populus trichocarpa HOM05D004855 ORTHO05D005656 8.5e-25 117.1 108 50.0
CAN.G128.111 Capsicum annuum HOM05D004855 ORTHO05D005656 1.1e-24 116.7 109 53.2
CsaV3_5G035370 Cucumis sativus L. HOM05D004855 ORTHO05D005656 1.1e-24 116.7 108 50.9
AL5G33410 Arabidopsis lyrata HOM05D004855 ORTHO05D005656 1.4e-24 116.3 108 49.1
Ca_25663_v3 Cicer arietinum L. HOM05D004855 ORTHO05D005656 1.4e-24 116.3 108 50.0
MSTRG.5853 Avicennia marina HOM05D004855 ORTHO05D005656 1.9e-24 115.9 109 53.2
Migut.L01788 Erythranthe guttata HOM05D004855 ORTHO05D005656 2.5e-24 115.5 109 51.4
Carub.0007s2265 Capsella rubella HOM05D004855 ORTHO05D005656 3.2e-24 115.2 108 48.1
ECA236G2758 Erigeron canadensis HOM05D004855 ORTHO05D005656 3.2e-24 115.2 108 52.8
BcaB02g07823 Brassica carinata HOM05D004855 ORTHO05D005656 4.2e-24 114.8 109 50.5
CAN.G397.61 Capsicum annuum HOM05D004855 ORTHO05D005656 4.2e-24 114.8 108 50.0
Nitab4.5_0000692g0080 Nicotiana tabacum HOM05D004855 ORTHO05D005656 4.2e-24 114.8 108 49.1
AT3G52630 Arabidopsis thaliana HOM05D004855 ORTHO05D005656 5.5e-24 114.4 108 49.1
Migut.J01024 Erythranthe guttata HOM05D004855 ORTHO05D005656 5.5e-24 114.4 109 50.5
Oeu047859.1 Olea europaea HOM05D004855 ORTHO05D005656 5.5e-24 114.4 109 51.4
Sp7g15440 Schrenkiella parvula HOM05D002603 ORTHO05D002907 5.5e-24 114.4 105 48.6
CiPaw.13G039700 Carya illinoinensis HOM05D004855 ORTHO05D005656 7.2e-24 114.0 108 51.9
Carub.0005s1905 Capsella rubella HOM05D004855 ORTHO05D005656 9.4e-24 113.6 108 48.1
Peaxi162Scf00404g00216 Petunia axillaris HOM05D004855 ORTHO05D005656 1.2e-23 113.2 108 49.1
Sp5g09660 Schrenkiella parvula HOM05D004855 ORTHO05D005656 1.2e-23 113.2 108 50.9
Zm00001eb127650 Zea mays HOM05D004855 ORTHO05D005656 1.2e-23 113.2 108 46.3
FAN05G0016 Fragaria x ananassa HOM05D004855 ORTHO05D005656 1.6e-23 112.8 108 49.1
SalBow3G4427 Salvia bowleyana HOM05D004855 ORTHO05D005656 1.6e-23 112.8 108 48.1
Zm00001eb333640 Zea mays HOM05D004855 ORTHO05D005656 1.6e-23 112.8 108 48.1
MELO3C012349.2 Cucumis melo HOM05D004855 ORTHO05D005656 2.1e-23 112.5 108 49.1
Sopen10g031710 Solanum pennellii HOM05D004855 ORTHO05D005656 2.1e-23 112.5 109 51.4
Potri.010G239200 Populus trichocarpa HOM05D004855 ORTHO05D005656 2.7e-23 112.1 108 50.0
VMungo1383G3261 Vigna mungo HOM05D004855 ORTHO05D005656 2.7e-23 112.1 107 49.5
Medtr1g112020 Medicago truncatula HOM05D004855 ORTHO05D005656 6.1e-23 110.9 108 49.1
TPR.G23346 Trifolium pratense HOM05D004855 ORTHO05D005656 6.1e-23 110.9 108 47.2
Cfa021941 Carpinus fangiana HOM05D004855 ORTHO05D005656 7.9e-23 110.5 108 48.1
BolC1t01228H Brassica oleracea HOM05D002603 ORTHO05D002907 1.0e-22 110.2 96 52.1
Ca_09013_v3 Cicer arietinum L. HOM05D004855 ORTHO05D005656 1.0e-22 110.2 108 50.0
Medtr1g112040 Medicago truncatula HOM05D004855 ORTHO05D005656 1.0e-22 110.2 108 49.1
FvH4_6g18910 Fragaria vesca HOM05D004855 ORTHO05D005656 1.8e-22 109.4 108 47.2
FAN02G3816 Fragaria x ananassa HOM05D004855 ORTHO05D005656 2.3e-22 109.0 108 47.2
Medtr7g104870 Medicago truncatula HOM05D004855 ORTHO05D005656 2.3e-22 109.0 108 50.0
RcHm_v2.0_Chr3g0473901 Rosa chinensis HOM05D004855 ORTHO05D005656 3.9e-22 108.2 108 47.2
TPR.G2466 Trifolium pratense HOM05D004855 ORTHO05D005656 3.9e-22 108.2 108 47.2
PGSC0003DMG400008876 Solanum tuberosum HOM05D004855 ORTHO05D005656 5.1e-22 107.8 108 48.1
TPR.G20467 Trifolium pratense HOM05D004855 ORTHO05D005656 5.1e-22 107.8 108 47.2
Lalb_Chr21g0309181 Lupinus albus HOM05D004855 ORTHO05D005656 1.1e-21 106.7 108 47.2
Glyma.10G278800 Glycine max HOM05D004855 ORTHO05D005656 1.5e-21 106.3 108 47.2
VMungo0720G0894 Vigna mungo HOM05D004855 ORTHO05D005656 1.5e-21 106.3 108 48.1
Sabra10G0187300 Salix brachista HOM05D004855 ORTHO05D005656 2.0e-21 105.9 108 48.1
Phvul.007G022600 Phaseolus vulgaris HOM05D004855 ORTHO05D005656 2.6e-21 105.5 108 48.1
Sopen09g004650 Solanum pennellii HOM05D004855 ORTHO05D005656 2.6e-21 105.5 108 46.3
TPR.G762 Trifolium pratense HOM05D004855 ORTHO05D005656 4.4e-21 104.8 108 46.3
Psat3g032240 Pisum sativum HOM05D004855 ORTHO05D005656 9.7e-21 103.6 111 47.7
Glyma.20G111700 Glycine max HOM05D004855 ORTHO05D005656 1.3e-20 103.2 108 45.4
QL07p038661 Quercus lobata HOM05D004855 ORTHO05D005656 2.8e-20 102.1 86 54.7
vmacro07416 Vaccinium macrocarpon HOM05D004855 ORTHO05D005656 8.2e-20 100.5 90 53.3
Cpa.g.sc5.8 Carica papaya HOM05D004855 ORTHO05D005656 1.1e-19 100.1 86 52.3
MD12G1025300 Malus domestica HOM05D004855 ORTHO05D005656 1.8e-19 99.4 104 44.2
Lj5g0001855 Lotus japonicus HOM05D004855 ORTHO05D005656 2.4e-19 99.0 108 42.6
A01p10600 Brassica napus HOM05D002603 ORTHO05D002907 3.1e-19 98.6 86 53.5
C01p12540 Brassica napus HOM05D002603 ORTHO05D002907 3.1e-19 98.6 86 53.5
Nitab4.5_0000062g0480 Nicotiana tabacum HOM05D004855 ORTHO05D005656 4.1e-19 98.2 84 53.6
Zm00001eb121860 Zea mays HOM05D003776 ORTHO05D005656 4.1e-19 98.2 91 49.5
Nitab4.5_0003808g0090 Nicotiana tabacum HOM05D004855 ORTHO05D005656 9.1e-19 97.1 84 53.6
COL.COLO4_29712 Corchorus olitorius HOM05D004855 ORTHO05D005656 2.6e-18 95.5 92 48.9
Eucgr.K02554 Eucalyptus grandis HOM05D004855 ORTHO05D005656 3.4e-18 95.1 108 44.4
EL10Ac2g02589 Beta vulgaris HOM05D004855 ORTHO05D005656 7.7e-18 94.0 86 46.5
CARHR225430 Cardamine hirsuta HOM05D004855 ORTHO05D005656 7.7e-18 94.0 105 40.0
HPP92_016958 Vanilla planifolia HOM05D004855 ORTHO05D005656 1.0e-17 93.6 87 48.3
Rhsim02G0090500 Rhododendron simsii HOM05D004855 ORTHO05D005656 1.3e-17 93.2 86 48.8
Hund19922 Selenicereus undatus HOM05D004855 ORTHO05D005656 1.3e-17 93.2 86 45.3
RhsimUnG0050400 Rhododendron simsii HOM05D000314 ORTHO05D000189 1.7e-17 92.8 87 49.4
Rhsim03G0015500 Rhododendron simsii HOM05D004855 ORTHO05D005656 3.8e-17 91.7 90 48.9
Duzib093G1614 Durio zibethinus HOM05D004855 ORTHO05D005656 8.5e-17 90.5 89 44.9
PGSC0003DMG400028113 Solanum tuberosum HOM05D004855 ORTHO05D005656 8.5e-17 90.5 95 48.4
Sabra06G0163300 Salix brachista HOM05D004855 ORTHO05D005656 2.5e-16 89.0 87 46.0
Solyc10g081210.3 Solanum lycopersicum HOM05D004855 ORTHO05D005656 1.6e-15 86.3 91 47.3
ClCG05G021800 Citrullus lanatus HOM05D004855 ORTHO05D005656 8.0e-15 84.0 86 46.5
Manes.10G061800 Manihot esculenta HOM05D004855 ORTHO05D005656 1.0e-14 83.6 86 44.2
CSS0024102 Camellia sinensis var. sinensis HOM05D004855 ORTHO05D005656 1.8e-14 82.8 87 47.1
Peaxi162Scf00153g00093 Petunia axillaris HOM05D004855 ORTHO05D005656 1.8e-14 82.8 66 57.6
Sed0001253 Sechium edule HOM05D004855 ORTHO05D005656 3.0e-14 82.0 94 44.7
CBR_g41290 Chara braunii HOM05D004855 ORTHO05D005656 3.9e-14 81.6 110 38.2
CSS0041239 Camellia sinensis var. sinensis HOM05D004855 ORTHO05D005656 2.6e-13 79.0 87 44.8
PRCOL_00005602 Prasinoderma coloniale HOM05D004855 ORTHO05D005656 2.6e-13 79.0 109 34.9
unitig_749.g14301 Utricularia gibba HOM05D004855 ORTHO05D005656 1.1e-11 73.6 72 47.2
SHI23843 Sapria himalayana HOM05D004855 ORTHO05D005656 5.3e-11 71.2 82 42.7
Peaxi162Scf00153g00101 Petunia axillaris HOM05D004855 ORTHO05D005656 3.5e-10 68.6 66 53.0
MCO11G135 Micromonas commoda HOM05D004855 ORTHO05D005656 5.9e-10 67.8 109 33.0
Zm00001eb007300 Zea mays HOM05D004855 ORTHO05D005656 7.7e-10 67.4 65 49.2
Zm00001eb198520 Zea mays HOM05D012833 ORTHO05D005656 7.7e-10 67.4 65 49.2
Psat3g176360 Pisum sativum HOM05D004855 ORTHO05D005656 1.3e-09 66.6 75 45.3
arahy.Tifrunner.gnm1.ann1.NID4K0 Arachis hypogaea HOM05D004855 ORTHO05D005656 1.5e-08 63.2 58 48.3


User provided reference genes

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