Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_35716 Sequoiadendron giganteum HOM05D003942 ORTHO05D004527 1.7e-224 782.3 394 100.0
TAR375G0209 Trochodendron aralioides HOM05D003942 ORTHO05D004527 5.7e-119 431.8 363 60.9
TAR629G1832 Trochodendron aralioides HOM05D003942 ORTHO05D004527 7.7e-116 421.4 363 59.5
Duzib133G0298 Durio zibethinus HOM05D003942 ORTHO05D004527 1.7e-115 420.2 333 62.5
Dinv32469 Davidia involucrata HOM05D003942 ORTHO05D004527 2.2e-115 419.9 350 61.7
MBI18_g25515_MAGBIO Magnolia biondii HOM05D003942 ORTHO05D004527 2.2e-115 419.9 364 58.5
AUR62022550 Chenopodium quinoa HOM05D003942 ORTHO05D004527 1.1e-114 417.5 346 60.1
Atru.chr5.464 Acer truncatum HOM05D003942 ORTHO05D004527 3.2e-114 416.0 330 65.2
Rhsim07G0016400 Rhododendron simsii HOM05D003942 ORTHO05D004527 4.2e-114 415.6 325 63.4
RcHm_v2.0_Chr1g0355071 Rosa chinensis HOM05D003942 ORTHO05D004527 4.2e-114 415.6 356 59.6
Thecc.01G360500 Theobroma cacao HOM05D003942 ORTHO05D004527 4.2e-114 415.6 340 61.5
CSS0049620 Camellia sinensis var. sinensis HOM05D003942 ORTHO05D004527 5.5e-114 415.2 331 62.5
FAN10G4090 Fragaria x ananassa HOM05D003942 ORTHO05D004527 9.4e-114 414.5 338 61.2
FAN06G2309 Fragaria x ananassa HOM05D003942 ORTHO05D004527 1.2e-113 414.1 348 60.3
Actinidia10022 Actinidia chinensis HOM05D003942 ORTHO05D004527 1.6e-113 413.7 325 63.7
CSS0041241 Camellia sinensis var. sinensis HOM05D003942 ORTHO05D004527 2.1e-113 413.3 331 62.2
AUR62004344 Chenopodium quinoa HOM05D003942 ORTHO05D004527 2.7e-113 412.9 354 59.0
FvH4_7g14170 Fragaria vesca HOM05D003942 ORTHO05D004527 6.1e-113 411.8 348 60.1
TWI23G1005 Tripterygium wilfordii HOM05D003942 ORTHO05D004527 6.1e-113 411.8 330 61.5
QL08p049021 Quercus lobata HOM05D003942 ORTHO05D004527 7.9e-113 411.4 340 60.0
TWI59G0555 Tripterygium wilfordii HOM05D003942 ORTHO05D004527 1.4e-112 410.6 351 58.7
CANSAT56G2580 Cannabis sativa HOM05D003942 ORTHO05D004527 2.3e-112 409.8 361 58.2
Prupe.2G168100 Prunus persica HOM05D003942 ORTHO05D004527 2.3e-112 409.8 340 61.5
SGA_v2.0_scaffold43G16422 Striga asiatica HOM05D003942 ORTHO05D004527 2.3e-112 409.8 344 61.3
Nitab4.5_0001702g0090 Nicotiana tabacum HOM05D003942 ORTHO05D004527 3.9e-112 409.1 332 61.7
GSVIVG01026895001 Vitis vinifera HOM05D003942 ORTHO05D004527 3.9e-112 409.1 329 64.1
PGR042G2566 Punica granatum HOM05D003942 ORTHO05D004527 5.1e-112 408.7 329 62.9
FAN01G0250 Fragaria x ananassa HOM05D003942 ORTHO05D004527 8.8e-112 407.9 325 62.2
Gohir.A11G088200 Gossypium hirsutum HOM05D003942 ORTHO05D004527 8.8e-112 407.9 339 61.4
COL.COLO4_12700 Corchorus olitorius HOM05D003942 ORTHO05D004527 1.1e-111 407.5 341 61.9
FAN03G2475 Fragaria x ananassa HOM05D003942 ORTHO05D004527 1.5e-111 407.1 338 60.4
Gorai.007G098800 Gossypium raimondii HOM05D003942 ORTHO05D004527 1.5e-111 407.1 339 61.4
FAN06G3470 Fragaria x ananassa HOM05D003942 ORTHO05D004527 2.0e-111 406.8 348 59.5
SEGI_25793 Sequoiadendron giganteum HOM05D003942 ORTHO05D004527 2.0e-111 406.8 359 57.9
Cpa.g.sc18.243 Carica papaya HOM05D003942 ORTHO05D004527 2.6e-111 406.4 345 60.9
Cfa003938 Carpinus fangiana HOM05D003942 ORTHO05D004527 3.3e-111 406.0 355 59.7
THA.LOC104817290 Tarenaya hassleriana HOM05D003942 ORTHO05D004527 3.3e-111 406.0 362 57.7
Potri.014G082900 Populus trichocarpa HOM05D003942 ORTHO05D004527 4.4e-111 405.6 343 59.8
Eucgr.E00157 Eucalyptus grandis HOM05D003942 ORTHO05D004527 5.7e-111 405.2 349 59.0
Migut.N01440 Erythranthe guttata HOM05D003942 ORTHO05D004527 9.7e-111 404.4 328 60.7
Nitab4.5_0008050g0040 Nicotiana tabacum HOM05D003942 ORTHO05D004527 1.3e-110 404.1 332 60.8
Peaxi162Scf00191g01422 Petunia axillaris HOM05D003942 ORTHO05D004527 2.2e-110 403.3 332 60.8
SalBow5G2271 Salvia bowleyana HOM05D003942 ORTHO05D004527 2.2e-110 403.3 342 59.4
MD01G1057600 Malus domestica HOM05D003942 ORTHO05D004527 2.8e-110 402.9 352 59.7
MD07G1139000 Malus domestica HOM05D003942 ORTHO05D004527 3.7e-110 402.5 360 59.4
Pp3c3_22870 Physcomitrium patens HOM05D003942 ORTHO05D004527 3.7e-110 402.5 342 57.9
VMungo0331G0006 Vigna mungo HOM05D003942 ORTHO05D004527 4.8e-110 402.1 328 61.9
Manes.05G036000 Manihot esculenta HOM05D003942 ORTHO05D004527 6.3e-110 401.7 364 57.7
CDE09G0298 Ceratophyllum demersum HOM05D003942 ORTHO05D004527 8.2e-110 401.4 334 59.3
Cc02_g37870 Coffea canephora HOM05D003942 ORTHO05D004527 1.1e-109 401.0 354 57.3
Aqoxy5G04009 Aquilegia oxysepala HOM05D003942 ORTHO05D004527 1.8e-109 400.2 370 57.3
Hund27285 Selenicereus undatus HOM05D003942 ORTHO05D004527 1.8e-109 400.2 378 56.1
CiPaw.01G059900 Carya illinoinensis HOM05D003942 ORTHO05D004527 3.1e-109 399.4 370 57.6
Lj3g0006137 Lotus japonicus HOM05D003942 ORTHO05D004527 3.1e-109 399.4 358 57.8
Sabra14G0060100 Salix brachista HOM05D003942 ORTHO05D004527 4.1e-109 399.1 326 60.7
HanXRQChr16g0522811 Helianthus annuus HOM05D003942 ORTHO05D004527 5.3e-109 398.7 338 60.4
CAN.G399.13 Capsicum annuum HOM05D003942 ORTHO05D004527 9.1e-109 397.9 354 57.6
Phvul.010G097300 Phaseolus vulgaris HOM05D003942 ORTHO05D004527 2.0e-108 396.7 328 61.0
Lalb_Chr03g0038211 Lupinus albus HOM05D003942 ORTHO05D004527 2.6e-108 396.4 345 58.0
SEGI_34263 Sequoiadendron giganteum HOM05D003942 ORTHO05D004527 2.6e-108 396.4 232 89.2
Lalb_Chr04g0256871 Lupinus albus HOM05D003942 ORTHO05D004527 1.7e-107 393.7 326 60.4
Aa31LG10G15570 Aethionema arabicum HOM05D003942 ORTHO05D004527 2.9e-107 392.9 346 58.7
MSTRG.4859 Avicennia marina HOM05D003942 ORTHO05D004527 2.9e-107 392.9 343 57.4
Ah.05g180690 Amaranthus hybridus HOM05D003942 ORTHO05D004527 5.0e-107 392.1 338 58.3
Solyc05g049900.3 Solanum lycopersicum HOM05D003942 ORTHO05D004527 8.5e-107 391.3 366 56.0
Sopen05g028240 Solanum pennellii HOM05D003942 ORTHO05D004527 8.5e-107 391.3 366 56.0
BolC4t24688H Brassica oleracea HOM05D003942 ORTHO05D004527 1.1e-106 391.0 364 56.9
Lsat_1_v5_gn_3_137060 Lactuca sativa HOM05D003942 ORTHO05D004527 1.1e-106 391.0 338 58.9
arahy.Tifrunner.gnm1.ann1.2H0UDK Arachis hypogaea HOM05D003942 ORTHO05D004527 1.4e-106 390.6 340 57.1
Ciclev10020374m.g Citrus clementina HOM05D003942 ORTHO05D004527 1.4e-106 390.6 353 57.2
CiPaw.02G030000 Carya illinoinensis HOM05D003942 ORTHO05D004527 1.9e-106 390.2 326 60.7
A04p01160 Brassica napus HOM05D003942 ORTHO05D004527 2.5e-106 389.8 339 58.4
C04p31390 Brassica napus HOM05D003942 ORTHO05D004527 2.5e-106 389.8 339 58.7
BraA04t15833Z Brassica rapa HOM05D003942 ORTHO05D004527 2.5e-106 389.8 339 58.4
arahy.Tifrunner.gnm1.ann1.Q5YAPI Arachis hypogaea HOM05D003942 ORTHO05D004527 3.2e-106 389.4 340 57.1
Lsat_1_v5_gn_4_36221 Lactuca sativa HOM05D003942 ORTHO05D004527 3.2e-106 389.4 343 58.0
Mapoly0071s0037 Marchantia polymorpha HOM05D003942 ORTHO05D004527 3.2e-106 389.4 326 56.7
Pp3c4_15850 Physcomitrium patens HOM05D003942 ORTHO05D004527 3.2e-106 389.4 338 58.9
Sp5g02060 Schrenkiella parvula HOM05D003942 ORTHO05D004527 5.5e-106 388.7 339 58.1
PGSC0003DMG400021644 Solanum tuberosum HOM05D003942 ORTHO05D004527 5.5e-106 388.7 370 54.9
AL5G43590 Arabidopsis lyrata HOM05D003942 ORTHO05D004527 7.2e-106 388.3 339 58.1
BcaC07g40631 Brassica carinata HOM05D003942 ORTHO05D004527 7.2e-106 388.3 364 55.8
Lj9A582T85 Lonicera japonica HOM05D003942 ORTHO05D004527 7.2e-106 388.3 427 49.2
Thhalv10006010m.g Eutrema salsugineum HOM05D003942 ORTHO05D004527 9.4e-106 387.9 339 58.1
Carub.0005s2799 Capsella rubella HOM05D003942 ORTHO05D004527 1.2e-105 387.5 339 58.1
Glyma.07G071900 Glycine max HOM05D003942 ORTHO05D004527 1.6e-105 387.1 328 60.1
BraA04t18872Z Brassica rapa HOM05D003942 ORTHO05D004527 6.1e-105 385.2 341 57.8
Psat4g154400 Pisum sativum HOM05D003942 ORTHO05D004527 8.0e-105 384.8 353 55.2
BcaC02g10219 Brassica carinata HOM05D003942 ORTHO05D004527 3.0e-104 382.9 329 59.9
Oeu020562.1 Olea europaea HOM05D003942 ORTHO05D004527 3.0e-104 382.9 329 59.0
C08p36210 Brassica napus HOM05D003942 ORTHO05D004527 3.9e-104 382.5 326 57.7
BolC8t51203H Brassica oleracea HOM05D003942 ORTHO05D004527 3.9e-104 382.5 326 57.7
A09p53400 Brassica napus HOM05D003942 ORTHO05D004527 5.2e-104 382.1 326 58.0
C04p71910 Brassica napus HOM05D003942 ORTHO05D004527 6.7e-104 381.7 341 58.1
Ca_23643_v3 Cicer arietinum L. HOM05D003942 ORTHO05D004527 6.7e-104 381.7 341 57.2
BolC4t28689H Brassica oleracea HOM05D003942 ORTHO05D004527 2.0e-103 380.2 341 57.5
BcaC09g52244 Brassica carinata HOM05D003942 ORTHO05D004527 2.6e-103 379.8 338 57.7
A04p34110 Brassica napus HOM05D003942 ORTHO05D004527 2.6e-103 379.8 341 57.5
Glyma.03G010800 Glycine max HOM05D003942 ORTHO05D004527 2.6e-103 379.8 342 57.6
BraA09t40766Z Brassica rapa HOM05D003942 ORTHO05D004527 3.3e-103 379.4 326 57.4
DCAR_015969 Daucus carota HOM05D003942 ORTHO05D004527 5.7e-103 378.6 353 55.2
HanXRQChr13g0426521 Helianthus annuus HOM05D003942 ORTHO05D004527 7.4e-103 378.3 367 52.9
BcaC02g07065 Brassica carinata HOM05D003942 ORTHO05D004527 9.7e-103 377.9 343 56.6
TPR.G15979 Trifolium pratense HOM05D003942 ORTHO05D004527 1.3e-102 377.5 323 59.4
Carub.0004s2857 Capsella rubella HOM05D003942 ORTHO05D004527 4.8e-102 375.6 339 57.2
Os03g0106000 Oryza sativa ssp. japonica HOM05D003942 ORTHO05D004527 4.8e-102 375.6 324 59.9
ECA240G2096 Erigeron canadensis HOM05D003942 ORTHO05D004527 1.4e-101 374.0 339 58.4
Thhalv10001467m.g Eutrema salsugineum HOM05D003942 ORTHO05D004527 1.8e-101 373.6 358 54.7
CARHR141140 Cardamine hirsuta HOM05D003942 ORTHO05D004527 3.1e-101 372.9 332 58.4
Medtr8g031000 Medicago truncatula HOM05D003942 ORTHO05D004527 7.0e-101 371.7 325 57.8
Sp4g27940 Schrenkiella parvula HOM05D003942 ORTHO05D004527 7.0e-101 371.7 339 56.6
Aa31LG1G27300 Aethionema arabicum HOM05D003942 ORTHO05D004527 5.9e-100 368.6 364 54.7
AL4G45080 Arabidopsis lyrata HOM05D003942 ORTHO05D004527 7.7e-100 368.2 339 55.8
Zm00001eb000510 Zea mays HOM05D003942 ORTHO05D004527 1.1e-98 364.4 384 51.3
HPP92_006558 Vanilla planifolia HOM05D003942 ORTHO05D004527 9.4e-98 361.3 323 57.0
Haze_15488 Corylus avellana HOM05D003942 ORTHO05D004527 2.7e-97 359.8 353 54.4
Sc23g0002980 Simmondsia chinensis HOM05D003942 ORTHO05D004527 6.1e-97 358.6 313 59.4
EL10Ac1g00428 Beta vulgaris HOM05D003942 ORTHO05D004527 8.8e-96 354.8 290 61.7
unitig_8.g3394 Utricularia gibba HOM05D003942 ORTHO05D004527 9.7e-95 351.3 329 54.1
SMO364G0338 Selaginella moellendorffii HOM05D003942 ORTHO05D004527 1.6e-92 344.0 312 56.1
AT2G45870 Arabidopsis thaliana HOM05D003942 ORTHO05D004527 5.2e-88 328.9 285 58.2
ECA234G1137 Erigeron canadensis HOM05D003942 ORTHO05D004527 2.8e-86 323.2 292 58.6
Mapoly0009s0131 Marchantia polymorpha HOM05D003942 ORTHO05D004527 7.8e-76 288.5 310 46.1
Nn1g01512 Nelumbo nucifera HOM05D003942 ORTHO05D004527 8.0e-73 278.5 338 45.6
AagrBONN_evm.TU.Sc2ySwM_344.3805 Anthoceros agrestis HOM05D003942 ORTHO05D004527 1.7e-70 270.8 316 43.7
AagrBONN_evm.TU.Sc2ySwM_362.1957 Anthoceros agrestis HOM05D003942 ORTHO05D004527 2.2e-70 270.4 288 47.6
Duzib138G1448 Durio zibethinus HOM05D003942 ORTHO05D004527 3.7e-70 269.6 361 44.0
AagrBONN_evm.TU.Sc2ySwM_228.958 Anthoceros agrestis HOM05D003942 ORTHO05D004527 1.9e-69 267.3 307 45.9
Pp3c2_13700 Physcomitrium patens HOM05D003942 ORTHO05D004527 1.0e-67 261.5 324 43.2
Pp3c1_34560 Physcomitrium patens HOM05D003942 ORTHO05D004527 6.6e-67 258.8 290 46.2
Pp3c1_34600 Physcomitrium patens HOM05D003942 ORTHO05D004527 1.6e-65 254.2 295 44.7
ATR0680G085 Amborella trichopoda HOM05D003942 ORTHO05D004527 4.7e-65 252.7 320 45.0
Gohir.D11G092500 Gossypium hirsutum HOM05D003942 ORTHO05D004527 6.2e-65 252.3 231 55.0
vmacro13277 Vaccinium macrocarpon HOM05D003942 ORTHO05D004527 1.8e-64 250.8 340 42.4
Pp3c11_9440 Physcomitrium patens HOM05D003942 ORTHO05D004527 8.9e-64 248.4 291 42.3
Pp3c1_3670 Physcomitrium patens HOM05D003942 ORTHO05D004527 1.7e-62 244.2 286 43.4
Pp3c6_24250 Physcomitrium patens HOM05D003942 ORTHO05D004527 6.0e-60 235.7 326 38.7
AT3G61320 Arabidopsis thaliana HOM05D003942 ORTHO05D004527 7.8e-60 235.3 213 54.5
CBR_g44610 Chara braunii HOM05D000505 ORTHO05D000301 1.2e-57 228.0 293 40.6
Pp3c14_6660 Physcomitrium patens HOM05D003942 ORTHO05D004527 1.4e-56 224.6 278 42.1
AagrBONN_evm.TU.Sc2ySwM_228.2628 Anthoceros agrestis HOM05D003942 ORTHO05D004527 7.8e-52 208.8 153 60.1
SEGI_01331 Sequoiadendron giganteum HOM05D003942 ORTHO05D004527 3.0e-51 206.8 137 81.0
HPP92_011356 Vanilla planifolia HOM05D003942 ORTHO05D004527 2.5e-50 203.8 161 60.2
MD01G1202300 Malus domestica HOM05D003942 ORTHO05D004527 1.4e-48 198.0 233 46.8
CBR_g772 Chara braunii HOM05D003942 ORTHO05D004527 2.4e-48 197.2 308 37.3
FAN10G2852 Fragaria x ananassa HOM05D003942 ORTHO05D004527 2.6e-47 193.7 158 60.8
Oeu020563.1 Olea europaea HOM05D003942 ORTHO05D004527 1.3e-43 181.4 195 50.8
CARHR171630 Cardamine hirsuta HOM05D003942 ORTHO05D004527 8.7e-43 178.7 161 58.4
Cre11.g474700 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 8.7e-43 178.7 321 33.3
Cre06.g277650 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 9.6e-42 175.3 302 32.8
Cre06.g261750 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 9.0e-40 168.7 317 33.4
CBR_g38187 Chara braunii HOM05D003942 ORTHO05D004527 3.4e-39 166.8 245 39.2
C05p09980 Brassica napus HOM05D003942 ORTHO05D004527 4.2e-37 159.8 134 61.9
HPP92_011355 Vanilla planifolia HOM05D003942 ORTHO05D004527 3.0e-35 153.7 128 60.2
Cre16.g663450 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 1.5e-34 151.4 293 33.4
Cre16.g663400 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 9.6e-34 148.7 293 33.1
PRCOL_00004040 Prasinoderma coloniale HOM05D003942 ORTHO05D004527 9.6e-34 148.7 299 32.1
Cre16.g662600 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 1.6e-33 147.9 296 33.1
FAN10G0144 Fragaria x ananassa HOM05D003942 ORTHO05D004527 2.4e-32 144.1 121 62.8
PRCOL_00003548 Prasinoderma coloniale HOM05D003942 ORTHO05D004527 3.2e-29 133.7 318 29.2
Cre07.g355300 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 1.2e-28 131.7 335 27.8
PRCOL_00006054 Prasinoderma coloniale HOM05D003942 ORTHO05D004527 1.6e-28 131.3 286 31.5
Cre01.g038100 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 2.1e-28 131.0 326 27.6
Pp3c11_6680 Physcomitrium patens HOM05D003942 ORTHO05D004527 2.1e-28 131.0 113 52.2
PRCOL_00003097 Prasinoderma coloniale HOM05D003942 ORTHO05D004527 3.9e-27 126.7 301 30.2
MCO01G232 Micromonas commoda HOM05D003942 ORTHO05D004527 8.7e-27 125.6 308 28.6
Pp3c6_17920 Physcomitrium patens HOM05D003942 ORTHO05D004527 2.6e-23 114.0 194 35.6
PRCOL_00005764 Prasinoderma coloniale HOM05D003942 ORTHO05D004527 9.9e-23 112.1 315 28.9
FAN10G3156 Fragaria x ananassa HOM05D000449 ORTHO05D004527 2.2e-22 110.9 80 66.2
Cre03.g199600 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 2.1e-20 104.4 221 28.1
PRCOL_00004398 Prasinoderma coloniale HOM05D003942 ORTHO05D004527 5.1e-19 99.8 296 28.4
BcaB02g11262 Brassica carinata HOM05D003942 ORTHO05D004527 4.8e-17 93.2 110 40.9
MCO09G357 Micromonas commoda HOM05D003942 ORTHO05D004527 1.8e-16 91.3 363 24.8
Oeu020564.1 Olea europaea HOM05D003942 ORTHO05D004527 5.8e-15 86.3 77 54.5
Pp3c3_14710 Physcomitrium patens HOM05D003942 ORTHO05D004527 2.3e-11 74.3 145 33.1
MCO01G007 Micromonas commoda HOM05D003942 ORTHO05D004527 3.9e-11 73.6 296 26.4
PSO478G4509 Papaver somniferum HOM05D003942 ORTHO05D004527 2.8e-09 67.4 42 76.2


User provided reference genes

Program Settings