Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_35699 Sequoiadendron giganteum HOM05D005505 ORTHO05D006974 2.8e-299 1031.2 521 100.0
ATR0787G156 Amborella trichopoda HOM05D005505 ORTHO05D006974 4.1e-157 558.9 470 59.8
vmacro00503 Vaccinium macrocarpon HOM05D005505 ORTHO05D006974 5.0e-155 552.0 489 57.9
Ciclev10004754m.g Citrus clementina HOM05D005505 ORTHO05D006974 8.5e-155 551.2 493 56.6
MBI10_g16825_MAGBIO Magnolia biondii HOM05D005505 ORTHO05D006974 1.1e-154 550.8 477 58.5
Actinidia35954 Actinidia chinensis HOM05D005505 ORTHO05D006974 1.9e-154 550.1 489 56.9
Nn8g40056 Nelumbo nucifera HOM05D005505 ORTHO05D006974 3.2e-154 549.3 505 55.2
TAR636G3130 Trochodendron aralioides HOM05D005505 ORTHO05D006974 3.2e-154 549.3 515 55.0
Manes.03G149700 Manihot esculenta HOM05D005505 ORTHO05D006974 9.4e-154 547.7 499 56.9
CiPaw.02G067600 Carya illinoinensis HOM05D005505 ORTHO05D006974 4.7e-153 545.4 487 56.1
COL.COLO4_20306 Corchorus olitorius HOM05D005505 ORTHO05D006974 6.1e-153 545.0 492 56.1
arahy.Tifrunner.gnm1.ann1.ZRDJ5X Arachis hypogaea HOM05D005505 ORTHO05D006974 2.3e-152 543.1 482 56.2
TWI53G0062 Tripterygium wilfordii HOM05D005505 ORTHO05D006974 3.0e-152 542.7 489 57.3
QL09p050425 Quercus lobata HOM05D005505 ORTHO05D006974 3.9e-152 542.3 486 56.8
Cc03_g07370 Coffea canephora HOM05D005505 ORTHO05D006974 8.8e-152 541.2 483 58.0
Potri.001G051200 Populus trichocarpa HOM05D005505 ORTHO05D006974 2.6e-151 539.7 517 55.7
arahy.Tifrunner.gnm1.ann1.H9DAM7 Arachis hypogaea HOM05D005505 ORTHO05D006974 3.3e-151 539.3 482 55.6
Thecc.04G209900 Theobroma cacao HOM05D005505 ORTHO05D006974 3.3e-151 539.3 490 56.3
arahy.Tifrunner.gnm1.ann1.QX4MR3 Arachis hypogaea HOM05D005505 ORTHO05D006974 5.7e-151 538.5 482 55.6
Lj1g0020537 Lotus japonicus HOM05D005505 ORTHO05D006974 7.4e-151 538.1 485 56.3
Gohir.A09G202800 Gossypium hirsutum HOM05D005505 ORTHO05D006974 6.3e-150 535.0 487 55.0
Duzib212G0911 Durio zibethinus HOM05D005505 ORTHO05D006974 8.2e-150 534.6 488 55.7
Gorai.006G220300 Gossypium raimondii HOM05D005505 ORTHO05D006974 8.2e-150 534.6 487 55.0
RcHm_v2.0_Chr7g0196051 Rosa chinensis HOM05D005505 ORTHO05D006974 1.4e-149 533.9 526 54.0
Prupe.5G110900 Prunus persica HOM05D005505 ORTHO05D006974 4.1e-149 532.3 473 57.1
Atru.chr4.1761 Acer truncatum HOM05D005505 ORTHO05D006974 7.0e-149 531.6 486 56.2
Gohir.D09G196900 Gossypium hirsutum HOM05D005505 ORTHO05D006974 7.0e-149 531.6 487 54.6
PSO017G4123 Papaver somniferum HOM05D005505 ORTHO05D006974 2.0e-148 530.0 462 58.4
FAN18G0472 Fragaria x ananassa HOM05D005505 ORTHO05D006974 2.6e-148 529.6 496 55.6
PSO063G3796 Papaver somniferum HOM05D005505 ORTHO05D006974 2.6e-148 529.6 475 57.1
THA.LOC104821613 Tarenaya hassleriana HOM05D005505 ORTHO05D006974 7.7e-148 528.1 488 55.5
FAN13G1424 Fragaria x ananassa HOM05D005505 ORTHO05D006974 1.0e-147 527.7 526 53.6
Lalb_Chr19g0126031 Lupinus albus HOM05D005505 ORTHO05D006974 1.0e-147 527.7 482 56.2
DCAR_030788 Daucus carota HOM05D005505 ORTHO05D006974 6.5e-147 525.0 496 53.2
Phvul.008G135500 Phaseolus vulgaris HOM05D005505 ORTHO05D006974 6.5e-147 525.0 470 56.6
FvH4_5g03680 Fragaria vesca HOM05D005505 ORTHO05D006974 8.5e-147 524.6 496 55.4
MSTRG.9830 Avicennia marina HOM05D005505 ORTHO05D006974 1.1e-146 524.2 490 54.3
HanXRQChr10g0278391 Helianthus annuus HOM05D005505 ORTHO05D006974 1.1e-146 524.2 471 56.3
Lj5g0018216 Lotus japonicus HOM05D005505 ORTHO05D006974 1.1e-146 524.2 480 55.2
Lalb_Chr03g0041191 Lupinus albus HOM05D005505 ORTHO05D006974 1.5e-146 523.9 485 55.3
Glyma.08G345200 Glycine max HOM05D005505 ORTHO05D006974 1.9e-146 523.5 485 55.5
Rhsim09G0051500 Rhododendron simsii HOM05D005505 ORTHO05D006974 2.5e-146 523.1 549 51.5
MD06G1096300 Malus domestica HOM05D005505 ORTHO05D006974 3.2e-146 522.7 469 56.7
SalBow2G0189 Salvia bowleyana HOM05D005505 ORTHO05D006974 5.5e-146 521.9 470 56.2
Ca_07402_v3 Cicer arietinum L. HOM05D005505 ORTHO05D006974 7.2e-146 521.5 470 55.7
TPR.G26848 Trifolium pratense HOM05D005505 ORTHO05D006974 7.2e-146 521.5 483 54.5
FAN13G2718 Fragaria x ananassa HOM05D005505 ORTHO05D006974 1.2e-145 520.8 534 53.0
SGA_v2.0_scaffold380G50374 Striga asiatica HOM05D005505 ORTHO05D006974 3.6e-145 519.2 468 56.0
PGR142G3770 Punica granatum HOM05D005505 ORTHO05D006974 1.0e-144 517.7 472 54.7
Os03g0839100 Oryza sativa ssp. japonica HOM05D005505 ORTHO05D006974 3.0e-144 516.2 491 54.6
ECA233G0503 Erigeron canadensis HOM05D005505 ORTHO05D006974 5.2e-144 515.4 485 54.6
Carub.0003s2430 Capsella rubella HOM05D005505 ORTHO05D006974 1.1e-143 514.2 491 54.4
Psat7g176120 Pisum sativum HOM05D005505 ORTHO05D006974 1.1e-143 514.2 498 52.2
Sopen09g034490 Solanum pennellii HOM05D005505 ORTHO05D006974 1.1e-143 514.2 471 55.6
CAN.G500.70 Capsicum annuum HOM05D005505 ORTHO05D006974 2.0e-143 513.5 470 55.1
Eucgr.H00086 Eucalyptus grandis HOM05D005505 ORTHO05D006974 2.0e-143 513.5 477 54.9
Medtr2g060550 Medicago truncatula HOM05D005505 ORTHO05D006974 2.0e-143 513.5 518 51.2
Solyc09g091570.2 Solanum lycopersicum HOM05D005505 ORTHO05D006974 2.0e-143 513.5 471 55.6
CsaV3_4G006210 Cucumis sativus L. HOM05D005505 ORTHO05D006974 2.6e-143 513.1 473 55.2
Aqoxy2G03778 Aquilegia oxysepala HOM05D005505 ORTHO05D006974 3.3e-143 512.7 488 53.7
CANSAT21G2364 Cannabis sativa HOM05D005505 ORTHO05D006974 7.4e-143 511.5 515 53.0
MELO3C016329.2 Cucumis melo HOM05D005505 ORTHO05D006974 1.3e-142 510.8 471 56.3
Lsat_1_v5_gn_2_43080 Lactuca sativa HOM05D005505 ORTHO05D006974 1.3e-142 510.8 468 55.6
A07p08370 Brassica napus HOM05D005505 ORTHO05D006974 1.7e-142 510.4 497 54.1
Migut.G00632 Erythranthe guttata HOM05D005505 ORTHO05D006974 2.2e-142 510.0 472 54.2
GSVIVG01012536001 Vitis vinifera HOM05D005505 ORTHO05D006974 2.2e-142 510.0 455 58.0
BcaB06g26566 Brassica carinata HOM05D005505 ORTHO05D006974 2.8e-142 509.6 495 54.5
Psat3g151840 Pisum sativum HOM05D005505 ORTHO05D006974 2.8e-142 509.6 497 52.3
Sabra01G0035800 Salix brachista HOM05D005505 ORTHO05D006974 2.8e-142 509.6 454 56.6
Sed0009691 Sechium edule HOM05D005505 ORTHO05D006974 4.8e-142 508.8 502 53.8
AT3G24200 Arabidopsis thaliana HOM05D005505 ORTHO05D006974 1.1e-141 507.7 503 53.3
BcaC06g35602 Brassica carinata HOM05D005505 ORTHO05D006974 1.1e-141 507.7 497 53.7
C07p13070 Brassica napus HOM05D005505 ORTHO05D006974 1.1e-141 507.7 497 53.7
C09p75660 Brassica napus HOM05D005505 ORTHO05D006974 1.1e-141 507.7 497 53.7
BolC7t41801H Brassica oleracea HOM05D005505 ORTHO05D006974 1.1e-141 507.7 497 53.7
Mapoly0028s0013 Marchantia polymorpha HOM05D005505 ORTHO05D006974 1.1e-141 507.7 497 55.1
Oeu026858.1 Olea europaea HOM05D005505 ORTHO05D006974 1.1e-141 507.7 462 55.4
BraA07t28623Z Brassica rapa HOM05D005505 ORTHO05D006974 1.8e-141 506.9 497 53.7
Nitab4.5_0000306g0020 Nicotiana tabacum HOM05D005505 ORTHO05D006974 1.2e-140 504.2 484 53.5
Thhalv10002522m.g Eutrema salsugineum HOM05D005505 ORTHO05D006974 1.6e-140 503.8 473 54.5
Nitab4.5_0004881g0030 Nicotiana tabacum HOM05D005505 ORTHO05D006974 2.0e-140 503.4 477 55.1
Zm00001eb211070 Zea mays HOM05D005505 ORTHO05D006974 3.5e-140 502.7 533 50.8
SGA_v2.0_scaffold57G20149 Striga asiatica HOM05D005505 ORTHO05D006974 4.5e-140 502.3 468 55.1
CARHR099990 Cardamine hirsuta HOM05D005505 ORTHO05D006974 1.7e-139 500.4 496 52.8
ClCG07G007730 Citrullus lanatus HOM05D005505 ORTHO05D006974 1.7e-139 500.4 518 51.7
FAN04G0744 Fragaria x ananassa HOM05D005505 ORTHO05D006974 1.9e-138 496.9 495 52.9
FAN04G1715 Fragaria x ananassa HOM05D005505 ORTHO05D006974 1.9e-138 496.9 495 52.9
Sc24g0002560 Simmondsia chinensis HOM05D005505 ORTHO05D006974 1.9e-138 496.9 472 53.6
FAN08G1440 Fragaria x ananassa HOM05D005505 ORTHO05D006974 3.2e-138 496.1 499 53.5
Pp3c26_12110 Physcomitrium patens HOM05D005505 ORTHO05D006974 1.6e-137 493.8 505 54.1
AUR62001295 Chenopodium quinoa HOM05D005505 ORTHO05D006974 2.1e-137 493.4 489 53.0
AUR62025680 Chenopodium quinoa HOM05D005505 ORTHO05D006974 2.1e-137 493.4 470 54.3
EL10Ac7g18096 Beta vulgaris HOM05D005505 ORTHO05D006974 2.7e-137 493.0 485 51.1
Peaxi162Scf00047g01039 Petunia axillaris HOM05D005505 ORTHO05D006974 8.0e-137 491.5 486 52.3
Aa31LG8G10580 Aethionema arabicum HOM05D005505 ORTHO05D006974 8.8e-136 488.0 496 51.4
Hund05658 Selenicereus undatus HOM05D005505 ORTHO05D006974 1.5e-135 487.3 492 51.2
PGSC0003DMG400029626 Solanum tuberosum HOM05D005505 ORTHO05D006974 1.7e-134 483.8 449 54.8
Lj3C565G3 Lonicera japonica HOM05D005505 ORTHO05D006974 2.2e-134 483.4 451 56.1
Medtr7g051960 Medicago truncatula HOM05D005505 ORTHO05D006974 1.6e-132 477.2 446 53.4
Duzib151G0717 Durio zibethinus HOM05D005505 ORTHO05D006974 2.0e-132 476.9 493 50.7
Lj3A577G5 Lonicera japonica HOM05D005505 ORTHO05D006974 3.8e-131 472.6 540 49.1
unitig_32.g10868 Utricularia gibba HOM05D005505 ORTHO05D006974 1.1e-130 471.1 471 51.0
SMO351G0576 Selaginella moellendorffii HOM05D005505 ORTHO05D006974 1.8e-128 463.8 456 55.5
Cpa.g.sc59.105 Carica papaya HOM05D005505 ORTHO05D006974 1.5e-127 460.7 582 45.5
SHI00938 Sapria himalayana HOM05D005505 ORTHO05D006974 6.3e-126 455.3 462 51.1
Sp3g21750 Schrenkiella parvula HOM05D005505 ORTHO05D006974 7.7e-124 448.4 473 51.0
MD14G1116500 Malus domestica HOM05D005505 ORTHO05D006974 2.2e-118 430.3 454 50.7
Haze_11578 Corylus avellana HOM05D005505 ORTHO05D006974 4.9e-110 402.5 370 55.7
Lj3A578G8 Lonicera japonica HOM05D005505 ORTHO05D006974 3.5e-108 396.4 383 54.6
CDE02G0375 Ceratophyllum demersum HOM05D005505 ORTHO05D006974 1.0e-107 394.8 387 52.5
Lj3A579T16 Lonicera japonica HOM05D005505 ORTHO05D006974 1.7e-107 394.0 427 50.6
BcaC05g30344 Brassica carinata HOM05D005505 ORTHO05D007330 9.8e-103 378.3 495 43.6
SpUn0001_0240 Schrenkiella parvula HOM05D005505 ORTHO05D006974 1.3e-99 367.9 461 44.5
Dinv38263 Davidia involucrata HOM05D005505 ORTHO05D006974 4.0e-96 356.3 338 54.4
arahy.Tifrunner.gnm1.ann1.NU2AG4 Arachis hypogaea HOM05D005505 ORTHO05D006974 1.6e-89 334.3 345 49.0
MCO15G051 Micromonas commoda HOM05D005505 ORTHO05D006974 8.4e-78 295.4 496 37.7
Lj3A580T64 Lonicera japonica HOM05D005505 ORTHO05D006974 8.7e-75 285.4 402 43.0
Gohir.D09G197033 Gossypium hirsutum HOM05D005505 ORTHO05D006974 1.6e-73 281.2 287 48.8
Cre02.g112850 Chlamydomonas reinhardtii HOM05D005505 ORTHO05D006974 2.8e-73 280.4 464 39.7
SpUn0001_0260 Schrenkiella parvula HOM05D005505 ORTHO05D006974 8.1e-73 278.9 507 35.7
Lj3A565G17 Lonicera japonica HOM05D005505 ORTHO05D006974 1.1e-66 258.5 336 44.9
PRCOL_00000308 Prasinoderma coloniale HOM05D005505 ORTHO05D006974 1.4e-61 241.5 390 39.0
Cfa022008 Carpinus fangiana HOM05D005505 ORTHO05D006974 3.7e-57 226.9 500 33.8
HPP92_019865 Vanilla planifolia HOM05D005505 ORTHO05D006974 6.2e-57 226.1 466 35.4
CAN.G220.36 Capsicum annuum HOM05D005505 ORTHO05D006974 8.7e-51 205.7 402 35.6
AL3G39020 Arabidopsis lyrata HOM05D005505 ORTHO05D006974 3.7e-49 200.3 224 50.9
BolC5t35086H Brassica oleracea HOM05D005505 ORTHO05D006974 8.5e-46 189.1 169 56.2
CBR_g34017 Chara braunii HOM05D005505 ORTHO05D006974 7.2e-45 186.0 212 48.1
CBR_g34015 Chara braunii HOM05D005505 ORTHO05D006974 2.0e-42 177.9 246 43.9
Lj3A566G16 Lonicera japonica HOM05D005505 ORTHO05D006974 1.3e-41 175.3 162 58.0
Ca_29365_v3 Cicer arietinum L. HOM05D005505 ORTHO05D006974 3.5e-31 140.6 351 29.1
Lj3A578G7 Lonicera japonica HOM05D005505 ORTHO05D006974 2.7e-28 131.0 91 70.3
SpUn0242_NC2199 Schrenkiella parvula HOM05D005505 ORTHO05D006974 1.1e-26 125.6 101 57.4
Haze_11577 Corylus avellana HOM05D005505 ORTHO05D006974 2.5e-21 107.8 88 60.2
Actinidia34626 Actinidia chinensis HOM05D005505 ORTHO05D006974 2.7e-12 77.8 73 56.2
Lj3A579T17 Lonicera japonica HOM05D005505 ORTHO05D006974 1.3e-09 68.9 65 60.0
CDE09G0201 Ceratophyllum demersum HOM05D000090 ORTHO05D001584 2.8e-09 67.8 47 72.3
AL3G39220 Arabidopsis lyrata HOM05D005505 ORTHO05D000101 1.1e-08 65.9 47 57.4
COL.COLO4_15613 Corchorus olitorius HOM05D005075 ORTHO05D162910 3.1e-08 64.3 214 28.5
Lj3A565T20 Lonicera japonica HOM05D005505 ORTHO05D006974 4.5e-07 60.5 64 57.8
MBI08_g27805_MAGBIO Magnolia biondii HOM05D000686 ORTHO05D000512 7.7e-07 59.7 230 28.3


User provided reference genes

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