Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_35055 Sequoiadendron giganteum HOM05D005245 ORTHO05D006388 0.0e+00 1152.5 889 100.0
Peaxi162Scf00189g00017 Petunia axillaris HOM05D005245 ORTHO05D006388 4.2e-29 134.4 272 33.8
PGSC0003DMG400009404 Solanum tuberosum HOM05D005245 ORTHO05D006388 1.2e-28 132.9 272 33.1
TAR316G0002 Trochodendron aralioides HOM05D005245 ORTHO05D006388 1.2e-28 132.9 219 39.3
Sopen07g027400 Solanum pennellii HOM05D005245 ORTHO05D006388 3.6e-28 131.3 272 32.7
Nitab4.5_0006823g0030 Nicotiana tabacum HOM05D005245 ORTHO05D006388 4.7e-28 131.0 270 31.5
Actinidia39337 Actinidia chinensis HOM05D005245 ORTHO05D006388 8.0e-28 130.2 219 34.7
Nn1g09000 Nelumbo nucifera HOM05D005245 ORTHO05D006388 4.0e-27 127.9 217 38.2
CDE10G0023 Ceratophyllum demersum HOM05D005245 ORTHO05D006388 5.2e-27 127.5 244 34.0
TAR626G0262 Trochodendron aralioides HOM05D005245 ORTHO05D006388 5.2e-27 127.5 286 33.2
Hma1.2p1_0002F.1_g002540 Hydrangea macrophylla HOM05D005245 ORTHO05D006388 6.7e-27 127.1 288 33.3
Ciclev10014152m.g Citrus clementina HOM05D005245 ORTHO05D006388 1.5e-26 125.9 280 31.4
Manes.13G138100 Manihot esculenta HOM05D005245 ORTHO05D006388 2.0e-26 125.6 288 30.9
Lj8C105T4 Lonicera japonica HOM05D005245 ORTHO05D006388 3.3e-26 124.8 298 32.9
Nitab4.5_0002629g0110 Nicotiana tabacum HOM05D005245 ORTHO05D006388 5.7e-26 124.0 269 31.2
Oeu031086.1 Olea europaea HOM05D005245 ORTHO05D006388 5.7e-26 124.0 283 35.3
Actinidia30446 Actinidia chinensis HOM05D005245 ORTHO05D006388 7.5e-26 123.6 197 37.6
Cfa014695 Carpinus fangiana HOM05D005245 ORTHO05D006388 9.7e-26 123.2 269 33.8
CAN.G1543.11 Capsicum annuum HOM05D005245 ORTHO05D006388 1.3e-25 122.9 203 35.0
Dinv03891 Davidia involucrata HOM05D005245 ORTHO05D006388 1.3e-25 122.9 294 33.0
PGR042G2390 Punica granatum HOM05D005245 ORTHO05D006388 2.2e-25 122.1 262 34.0
unitig_899.g15324 Utricularia gibba HOM05D005245 ORTHO05D006388 2.2e-25 122.1 267 30.7
CSS0021355 Camellia sinensis var. sinensis HOM05D005245 ORTHO05D006388 3.7e-25 121.3 210 33.3
MBI06_g25721_MAGBIO Magnolia biondii HOM05D005245 ORTHO05D006388 3.7e-25 121.3 270 33.0
ATR0602G272 Amborella trichopoda HOM05D005245 ORTHO05D006388 4.8e-25 120.9 279 33.0
Cpa.g.sc209.10 Carica papaya HOM05D005245 ORTHO05D006388 8.2e-25 120.2 222 34.2
Haze_13315 Corylus avellana HOM05D005245 ORTHO05D006388 1.4e-24 119.4 269 34.2
Oeu036088.3 Olea europaea HOM05D005245 ORTHO05D006388 1.8e-24 119.0 177 40.1
Rhsim04G0072600 Rhododendron simsii HOM05D005245 ORTHO05D006388 1.8e-24 119.0 210 36.2
Aqoxy1G02205 Aquilegia oxysepala HOM05D005245 ORTHO05D006388 5.3e-24 117.5 248 32.7
CiPaw.04G130500 Carya illinoinensis HOM05D005245 ORTHO05D006388 9.1e-24 116.7 211 34.6
Potri.013G119700 Populus trichocarpa HOM05D005245 ORTHO05D006388 9.1e-24 116.7 297 29.3
Migut.M00189 Erythranthe guttata HOM05D005245 ORTHO05D006388 1.2e-23 116.3 204 35.8
SalBow7G1067 Salvia bowleyana HOM05D005245 ORTHO05D006388 1.6e-23 115.9 241 32.8
SHI10497 Sapria himalayana HOM05D005245 ORTHO05D006388 1.0e-22 113.2 266 33.1
Thecc.01G241800 Theobroma cacao HOM05D005245 ORTHO05D006388 1.3e-22 112.8 291 32.6
MD17G1128800 Malus domestica HOM05D005245 ORTHO05D006388 1.7e-22 112.5 289 30.8
Gohir.A10G153600 Gossypium hirsutum HOM05D005245 ORTHO05D006388 2.9e-22 111.7 262 33.6
PSO339G1987 Papaver somniferum HOM05D005245 ORTHO05D006388 2.9e-22 111.7 247 31.6
HPP92_005198 Vanilla planifolia HOM05D005245 ORTHO05D006388 2.9e-22 111.7 277 31.8
Gorai.011G124400 Gossypium raimondii HOM05D005245 ORTHO05D006388 3.8e-22 111.3 277 31.4
PSO384G4553 Papaver somniferum HOM05D005245 ORTHO05D006388 3.8e-22 111.3 247 31.2
Gohir.D10G112600 Gossypium hirsutum HOM05D005245 ORTHO05D006388 5.0e-22 110.9 277 30.7
Hund00957 Selenicereus undatus HOM05D005245 ORTHO05D006388 5.0e-22 110.9 212 34.0
Eucgr.A01888 Eucalyptus grandis HOM05D005245 ORTHO05D006388 6.5e-22 110.5 211 34.6
Prupe.8G044600 Prunus persica HOM05D005245 ORTHO05D006388 8.5e-22 110.2 193 36.3
QL08p043062 Quercus lobata HOM05D005245 ORTHO05D006388 8.5e-22 110.2 213 34.7
Sabra19G0105000 Salix brachista HOM05D005245 ORTHO05D006388 8.5e-22 110.2 219 30.6
SGA_v2.0_scaffold106G30663 Striga asiatica HOM05D005245 ORTHO05D006388 8.5e-22 110.2 269 31.2
GSVIVG01020660001 Vitis vinifera HOM05D005245 ORTHO05D006388 8.5e-22 110.2 291 32.0
Lsat_1_v5_gn_8_137601 Lactuca sativa HOM05D005245 ORTHO05D006388 1.1e-21 109.8 226 32.7
PSO782G4194 Papaver somniferum HOM05D005245 ORTHO05D006388 1.1e-21 109.8 219 36.1
FAN09G0613 Fragaria x ananassa HOM05D005245 ORTHO05D006388 1.5e-21 109.4 210 33.8
Sabra13G0101100 Salix brachista HOM05D005245 ORTHO05D006388 1.9e-21 109.0 274 30.3
arahy.Tifrunner.gnm1.ann1.MS8YUN Arachis hypogaea HOM05D005245 ORTHO05D006388 2.5e-21 108.6 196 38.3
PSO063G4059 Papaver somniferum HOM05D005245 ORTHO05D006388 2.5e-21 108.6 271 31.0
Oeu000569.1 Olea europaea HOM05D005245 ORTHO05D006388 3.2e-21 108.2 271 30.6
Potri.019G091700 Populus trichocarpa HOM05D005245 ORTHO05D006388 4.2e-21 107.8 228 30.7
TWI23G1119 Tripterygium wilfordii HOM05D005245 ORTHO05D006388 4.2e-21 107.8 268 31.7
arahy.Tifrunner.gnm1.ann1.BT5S0A Arachis hypogaea HOM05D005245 ORTHO05D006388 7.2e-21 107.1 204 37.3
ClCG02G018020 Citrullus lanatus HOM05D005245 ORTHO05D006388 7.2e-21 107.1 219 33.8
CsaV3_6G015240 Cucumis sativus L. HOM05D005245 ORTHO05D006388 7.2e-21 107.1 224 32.1
CDE10G0522 Ceratophyllum demersum HOM05D005245 ORTHO05D006388 9.4e-21 106.7 194 34.0
MD09G1139300 Malus domestica HOM05D005245 ORTHO05D006388 9.4e-21 106.7 192 33.9
Sed0004663 Sechium edule HOM05D005245 ORTHO05D006388 9.4e-21 106.7 217 33.2
TWI59G0121 Tripterygium wilfordii HOM05D005245 ORTHO05D006388 9.4e-21 106.7 276 31.9
TPR.G14943 Trifolium pratense HOM05D005245 ORTHO05D006388 2.1e-20 105.5 195 33.3
CANSAT64G0642 Cannabis sativa HOM05D005245 ORTHO05D006388 2.7e-20 105.1 212 33.5
FvH4_6g27000 Fragaria vesca HOM05D005245 ORTHO05D006388 3.6e-20 104.8 265 29.8
RcHm_v2.0_Chr2g0128861 Rosa chinensis HOM05D005245 ORTHO05D006388 3.6e-20 104.8 209 32.5
Ca_18900_v3 Cicer arietinum L. HOM05D005245 ORTHO05D006388 3.0e-19 101.7 205 34.1
RcHm_v2.0_Chr5g0053351 Rosa chinensis HOM05D005245 ORTHO05D006388 4.0e-19 101.3 252 32.9
THA.LOC104822691 Tarenaya hassleriana HOM05D005245 ORTHO05D006388 5.2e-19 100.9 266 31.6
EL10Ac9g20856 Beta vulgaris HOM05D005245 ORTHO05D006388 1.2e-18 99.8 282 28.7
AT2G42370 Arabidopsis thaliana HOM05D005245 ORTHO05D006388 1.5e-18 99.4 177 33.9
HanXRQChr17g0554751 Helianthus annuus HOM05D005245 ORTHO05D006388 2.0e-18 99.0 199 33.7
HPP92_024035 Vanilla planifolia HOM05D005245 ORTHO05D006388 2.0e-18 99.0 203 32.0
Solyc07g053440.4 Solanum lycopersicum HOM05D005245 ORTHO05D006388 2.6e-18 98.6 172 34.3
Atru.chr6.2836 Acer truncatum HOM05D005245 ORTHO05D006388 3.4e-18 98.2 282 27.7
AUR62038992 Chenopodium quinoa HOM05D005245 ORTHO05D006388 3.4e-18 98.2 259 29.7
VMungo1127G0185 Vigna mungo HOM05D005245 ORTHO05D006388 3.4e-18 98.2 253 28.9
Lalb_Chr01g0005921 Lupinus albus HOM05D005245 ORTHO05D006388 5.7e-18 97.4 288 28.8
Ah.01g003870 Amaranthus hybridus HOM05D005245 ORTHO05D006388 7.5e-18 97.1 250 31.6
C06p25110 Brassica napus HOM05D005245 ORTHO05D006388 7.5e-18 97.1 216 30.1
BolC6t37670H Brassica oleracea HOM05D005245 ORTHO05D006388 7.5e-18 97.1 216 30.1
CARHR137420 Cardamine hirsuta HOM05D005245 ORTHO05D006388 7.5e-18 97.1 285 30.5
Lj3g0023683 Lotus japonicus HOM05D005245 ORTHO05D006388 7.5e-18 97.1 230 31.7
A07p23880 Brassica napus HOM05D005245 ORTHO05D006388 1.3e-17 96.3 216 30.1
AUR62024070 Chenopodium quinoa HOM05D005245 ORTHO05D006388 1.3e-17 96.3 254 31.1
Duzib264G0025 Durio zibethinus HOM05D005245 ORTHO05D006388 1.3e-17 96.3 278 30.2
Lalb_Chr19g0134981 Lupinus albus HOM05D005245 ORTHO05D006388 1.3e-17 96.3 207 32.4
BcaC08g44897 Brassica carinata HOM05D005245 ORTHO05D006388 1.7e-17 95.9 216 30.1
Lalb_Chr03g0029811 Lupinus albus HOM05D005245 ORTHO05D006388 2.2e-17 95.5 278 28.8
CARHR168460 Cardamine hirsuta HOM05D005245 ORTHO05D006388 2.8e-17 95.1 218 31.2
Dinv19977 Davidia involucrata HOM05D005245 ORTHO05D006388 2.8e-17 95.1 288 29.5
FvH4_3g11260 Fragaria vesca HOM05D005245 ORTHO05D006388 2.8e-17 95.1 206 32.0
Phvul.011G116900 Phaseolus vulgaris HOM05D005245 ORTHO05D006388 2.8e-17 95.1 276 30.4
Thhalv10005785m.g Eutrema salsugineum HOM05D005245 ORTHO05D006388 3.7e-17 94.7 213 31.0
Glyma.06G284801 Glycine max HOM05D005245 ORTHO05D006388 3.7e-17 94.7 195 35.4
AL4G40790 Arabidopsis lyrata HOM05D005245 ORTHO05D006388 4.8e-17 94.4 177 33.3
BraA07t30041Z Brassica rapa HOM05D005245 ORTHO05D006388 4.8e-17 94.4 207 30.9
ECA233G0823 Erigeron canadensis HOM05D005245 ORTHO05D006388 6.3e-17 94.0 280 29.6
AT3G58110 Arabidopsis thaliana HOM05D005245 ORTHO05D006388 8.3e-17 93.6 207 32.4
Sc12g0003330 Simmondsia chinensis HOM05D005245 ORTHO05D006388 7.0e-16 90.5 274 28.8
AL5G39800 Arabidopsis lyrata HOM05D005245 ORTHO05D006388 9.1e-16 90.1 197 32.0
BcaB02g07550 Brassica carinata HOM05D005245 ORTHO05D006388 1.6e-15 89.4 199 29.1
BcaB02g07551 Brassica carinata HOM05D005245 ORTHO05D006388 1.6e-15 89.4 199 29.1
HanXRQChr17g0560461 Helianthus annuus HOM05D005245 ORTHO05D006388 1.6e-15 89.4 191 33.5
Psat7g166560 Pisum sativum HOM05D005245 ORTHO05D006388 2.0e-15 89.0 272 29.0
Sp5g04610 Schrenkiella parvula HOM05D005245 ORTHO05D006388 2.7e-15 88.6 264 28.8
Cc02_g14370 Coffea canephora HOM05D005245 ORTHO05D006388 5.9e-15 87.4 197 32.5
CDE10G0045 Ceratophyllum demersum HOM05D005245 ORTHO05D006388 1.0e-14 86.7 161 31.7
Carub.0005s2496 Capsella rubella HOM05D005245 ORTHO05D006388 1.7e-14 85.9 275 27.3
BcaC08g44896 Brassica carinata HOM05D005245 ORTHO05D006388 2.7e-12 78.6 180 31.1
DCAR_006629 Daucus carota HOM05D005245 ORTHO05D006388 8.0e-12 77.0 287 26.1
DCAR_025312 Daucus carota HOM05D005245 ORTHO05D006388 1.5e-10 72.8 217 27.6
Medtr4g079510 Medicago truncatula HOM05D005245 ORTHO05D006388 9.8e-10 70.1 289 24.6
SGA_v2.0_scaffold51G18645 Striga asiatica HOM05D005245 ORTHO05D006388 1.1e-08 66.6 102 35.3
Glyma.12G121100 Glycine max HOM05D005245 ORTHO05D006388 1.8e-08 65.9 82 39.0
FAN21G3056 Fragaria x ananassa HOM05D005245 ORTHO05D006388 4.1e-08 64.7 222 27.9
TAR627G0756 Trochodendron aralioides HOM05D005245 ORTHO05D006388 4.1e-08 64.7 208 31.2
Zm00001eb204940 Zea mays HOM05D005245 ORTHO05D006388 1.2e-07 63.2 179 29.6
Lalb_Chr22g0356801 Lupinus albus HOM05D005245 ORTHO05D006388 2.0e-07 62.4 179 27.4
ECA233G3350 Erigeron canadensis HOM05D005245 ORTHO05D006388 4.5e-07 61.2 161 29.8
Os06g0538200 Oryza sativa ssp. japonica HOM05D005245 ORTHO05D006388 8.6e-06 57.0 223 28.7


User provided reference genes

Program Settings