Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_34898 Sequoiadendron giganteum HOM05D006250 ORTHO05D007107 2.4e-202 709.1 516 100.0
SEGI_15754 Sequoiadendron giganteum HOM05D001800 ORTHO05D000007 1.2e-39 168.7 156 63.5
SEGI_23986 Sequoiadendron giganteum HOM05D006250 ORTHO05D007107 4.2e-37 160.2 236 100.0
SEGI_25042 Sequoiadendron giganteum HOM05D001800 ORTHO05D000007 9.6e-34 149.1 146 61.0
Hma1.2p1_2649F.1_g326137 Hydrangea macrophylla HOM05D006250 ORTHO05D007107 2.8e-25 120.9 258 82.9
SEGI_11129 Sequoiadendron giganteum HOM05D001800 ORTHO05D007107 7.6e-23 112.8 109 63.3
SEGI_17082 Sequoiadendron giganteum HOM05D001214 ORTHO05D001029 7.6e-23 112.8 143 52.4
Sabra08G0147200 Salix brachista HOM05D006250 ORTHO05D007107 9.3e-21 105.9 257 78.2
Pp3c14_24560 Physcomitrium patens HOM05D006250 ORTHO05D007107 3.0e-19 100.9 250 82.0
Pp3c14_24566 Physcomitrium patens HOM05D006250 ORTHO05D007107 3.0e-19 100.9 250 82.0
Cc11_g14200 Coffea canephora HOM05D006250 ORTHO05D007107 2.5e-18 97.8 234 84.6
Aqoxy3G03090 Aquilegia oxysepala HOM05D006250 ORTHO05D007107 9.7e-18 95.9 235 84.7
COL.COLO4_19523 Corchorus olitorius HOM05D006250 ORTHO05D007107 1.4e-16 92.0 227 85.5
SEGI_17111 Sequoiadendron giganteum HOM05D001800 ORTHO05D000007 1.8e-16 91.7 135 46.7
HPP92_017346 Vanilla planifolia HOM05D006250 ORTHO05D007107 2.4e-16 91.3 235 83.8
arahy.Tifrunner.gnm1.ann1.11GRU6 Arachis hypogaea HOM05D006250 ORTHO05D007107 3.1e-16 90.9 239 81.2
arahy.Tifrunner.gnm1.ann1.ST0DQ2 Arachis hypogaea HOM05D006250 ORTHO05D007107 3.1e-16 90.9 239 81.2
MSTRG.625 Avicennia marina HOM05D006250 ORTHO05D007107 5.3e-16 90.1 234 82.9
Haze_12133 Corylus avellana HOM05D006250 ORTHO05D007107 5.3e-16 90.1 234 82.5
SEGI_06602 Sequoiadendron giganteum HOM05D001808 ORTHO05D000007 5.3e-16 90.1 158 45.6
Lalb_Chr09g0326521 Lupinus albus HOM05D006250 ORTHO05D007107 6.9e-16 89.7 233 82.4
Thecc.02G242000 Theobroma cacao HOM05D006250 ORTHO05D007107 1.5e-15 88.6 227 85.5
CBR_g61650 Chara braunii HOM05D006250 ORTHO05D007107 2.0e-15 88.2 258 76.4
Os06g0237502 Oryza sativa ssp. japonica HOM05D006250 ORTHO05D007107 2.0e-15 88.2 240 80.4
TAR371G0500 Trochodendron aralioides HOM05D006250 ORTHO05D007107 2.0e-15 88.2 227 57.3
Migut.L01451 Erythranthe guttata HOM05D006250 ORTHO05D007107 3.4e-15 87.4 234 82.9
Actinidia15003 Actinidia chinensis HOM05D006250 ORTHO05D007107 4.5e-15 87.0 233 84.1
QL03p066863 Quercus lobata HOM05D006250 ORTHO05D007107 4.5e-15 87.0 234 82.5
Gorai.009G344900 Gossypium raimondii HOM05D006250 ORTHO05D007107 7.7e-15 86.3 227 85.0
Nitab4.5_0005722g0060 Nicotiana tabacum HOM05D006250 ORTHO05D007107 7.7e-15 86.3 84 83.3
Potri.008G193700 Populus trichocarpa HOM05D006250 ORTHO05D007107 7.7e-15 86.3 228 82.9
Nitab4.5_0000257g0160 Nicotiana tabacum HOM05D006250 ORTHO05D007107 1.0e-14 85.9 85 82.4
Ciclev10031015m.g Citrus clementina HOM05D006250 ORTHO05D007107 1.7e-14 85.1 227 84.1
Gohir.D05G321400 Gossypium hirsutum HOM05D006250 ORTHO05D007107 1.7e-14 85.1 227 85.0
TWI18G0037 Tripterygium wilfordii HOM05D006250 ORTHO05D007107 1.7e-14 85.1 230 83.0
ATR0829G105 Amborella trichopoda HOM05D006250 ORTHO05D007107 2.9e-14 84.3 240 81.2
Peaxi162Scf00421g00828 Petunia axillaris HOM05D006250 ORTHO05D007107 3.8e-14 84.0 85 81.2
SEGI_15429 Sequoiadendron giganteum HOM05D000038 ORTHO05D000143 3.8e-14 84.0 164 42.7
Solyc05g006170.4 Solanum lycopersicum HOM05D006250 ORTHO05D007107 3.8e-14 84.0 85 80.0
unitig_749.g13267 Utricularia gibba HOM05D006250 ORTHO05D007107 5.0e-14 83.6 87 75.9
AUR62026573 Chenopodium quinoa HOM05D006250 ORTHO05D007107 6.5e-14 83.2 91 76.9
AUR62039411 Chenopodium quinoa HOM05D006250 ORTHO05D007107 6.5e-14 83.2 91 76.9
Manes.05G091350 Manihot esculenta HOM05D006250 ORTHO05D007107 6.5e-14 83.2 228 82.0
Sopen05g002190 Solanum pennellii HOM05D000912 ORTHO05D001232 6.5e-14 83.2 85 80.0
PGSC0003DMG400015603 Solanum tuberosum HOM05D006250 ORTHO05D007107 6.5e-14 83.2 85 80.0
CAN.G1160.10 Capsicum annuum HOM05D006250 ORTHO05D007107 8.5e-14 82.8 85 78.8
FvH4_4g35070 Fragaria vesca HOM05D006250 ORTHO05D007107 1.4e-13 82.0 86 75.6
SEGI_37752 Sequoiadendron giganteum HOM05D000021 ORTHO05D000010 1.4e-13 82.0 130 50.0
Dinv31115 Davidia involucrata HOM05D006250 ORTHO05D007107 2.5e-13 81.3 84 78.6
CSS0049978 Camellia sinensis var. sinensis HOM05D006250 ORTHO05D007107 4.2e-13 80.5 226 85.0
Duzib251G0023 Durio zibethinus HOM05D006250 ORTHO05D007107 4.2e-13 80.5 87 74.7
Hma1.2p1_1049F.1_g251780 Hydrangea macrophylla HOM05D006250 ORTHO05D007107 4.2e-13 80.5 85 77.6
Hma1.2p1_2649F.1_g326135 Hydrangea macrophylla HOM05D006250 ORTHO05D007107 4.2e-13 80.5 85 77.6
SGA_v2.0_scaffold8G04258 Striga asiatica HOM05D006250 ORTHO05D007107 4.2e-13 80.5 87 75.9
Dinv24907 Davidia involucrata HOM05D006250 ORTHO05D007107 5.5e-13 80.1 84 78.6
TPR.G13515 Trifolium pratense HOM05D006250 ORTHO05D007107 5.5e-13 80.1 84 75.0
GSVIVG01020179001 Vitis vinifera HOM05D006250 ORTHO05D007107 7.2e-13 79.7 227 84.1
SalBow2G3220 Salvia bowleyana HOM05D006250 ORTHO05D007107 9.4e-13 79.3 87 73.6
Eucgr.B03367 Eucalyptus grandis HOM05D006250 ORTHO05D007107 2.7e-12 77.8 86 72.1
PGR102G1255 Punica granatum HOM05D006250 ORTHO05D007107 2.7e-12 77.8 86 72.1
EL10Ac6g13760 Beta vulgaris HOM05D006250 ORTHO05D007107 3.6e-12 77.4 83 79.5
Lj2g0015976 Lotus japonicus HOM05D006250 ORTHO05D007107 4.6e-12 77.0 83 72.3
Medtr5g035590 Medicago truncatula HOM05D006250 ORTHO05D007107 4.6e-12 77.0 83 72.3
AL1G21310 Arabidopsis lyrata HOM05D006250 ORTHO05D007107 7.9e-12 76.3 83 74.7
AT1G10510 Arabidopsis thaliana HOM05D006250 ORTHO05D007107 7.9e-12 76.3 83 74.7
Carub.0001s0994 Capsella rubella HOM05D006250 ORTHO05D007107 7.9e-12 76.3 83 74.7
CiPaw.05G146100 Carya illinoinensis HOM05D006250 ORTHO05D007107 7.9e-12 76.3 84 71.4
RcHm_v2.0_Chr4g0444691 Rosa chinensis HOM05D006250 ORTHO05D007107 7.9e-12 76.3 84 73.8
FAN17G0914 Fragaria x ananassa HOM05D006250 ORTHO05D007107 1.0e-11 75.9 84 73.8
Aa31LG2G10230 Aethionema arabicum HOM05D006250 ORTHO05D007107 1.4e-11 75.5 225 56.0
MBI18_g16987_MAGBIO Magnolia biondii HOM05D006250 ORTHO05D007107 1.4e-11 75.5 227 82.8
Mapoly0090s0039 Marchantia polymorpha HOM05D006250 ORTHO05D007107 1.4e-11 75.5 241 77.6
FAN22G2376 Fragaria x ananassa HOM05D006250 ORTHO05D007107 1.8e-11 75.1 84 72.6
BcaC05g24872 Brassica carinata HOM05D006250 ORTHO05D007107 2.3e-11 74.7 82 74.4
BcaC05g24932 Brassica carinata HOM05D006250 ORTHO05D007107 2.3e-11 74.7 82 74.4
BcaC07g38569 Brassica carinata HOM05D006250 ORTHO05D007107 2.3e-11 74.7 82 74.4
BcaC07g38607 Brassica carinata HOM05D006250 ORTHO05D007107 2.3e-11 74.7 82 74.4
C05p08800 Brassica napus HOM05D006250 ORTHO05D007107 2.3e-11 74.7 82 74.4
BolC5t29626H Brassica oleracea HOM05D006250 ORTHO05D007107 2.3e-11 74.7 82 74.4
BolC8t49010H Brassica oleracea HOM05D006250 ORTHO05D007107 2.3e-11 74.7 82 74.4
BraA08t35306Z Brassica rapa HOM05D006250 ORTHO05D007107 2.3e-11 74.7 82 74.4
CARHR010650 Cardamine hirsuta HOM05D006250 ORTHO05D007107 2.3e-11 74.7 82 74.4
Thhalv10007114m.g Eutrema salsugineum HOM05D006250 ORTHO05D007107 2.3e-11 74.7 82 74.4
Prupe.1G260300 Prunus persica HOM05D006250 ORTHO05D007107 2.3e-11 74.7 84 72.6
Sp1g09140 Schrenkiella parvula HOM05D006250 ORTHO05D007107 2.3e-11 74.7 82 73.2
Ca_18091_v3 Cicer arietinum L. HOM05D006250 ORTHO05D007107 3.9e-11 73.9 82 70.7
Gohir.A05G319200 Gossypium hirsutum HOM05D006250 ORTHO05D007107 3.9e-11 73.9 227 82.4
MD16G1085800 Malus domestica HOM05D006250 ORTHO05D007107 3.9e-11 73.9 84 71.4
MD13G1086400 Malus domestica HOM05D006250 ORTHO05D007107 5.1e-11 73.6 84 71.4
CDE04G2141 Ceratophyllum demersum HOM05D006250 ORTHO05D007107 6.7e-11 73.2 227 81.9
A06p07280 Brassica napus HOM05D006250 ORTHO05D007107 8.8e-11 72.8 81 74.1
BraA06t23934Z Brassica rapa HOM05D006250 ORTHO05D007107 8.8e-11 72.8 81 74.1
SEGI_27718 Sequoiadendron giganteum HOM05D003162 ORTHO05D003599 1.5e-10 72.0 127 42.5
DCAR_026556 Daucus carota HOM05D006250 ORTHO05D007107 3.3e-10 70.9 73 84.9
FAN07G1033 Fragaria x ananassa HOM05D006250 ORTHO05D007107 7.4e-10 69.7 89 69.7
SEGI_40610 Sequoiadendron giganteum HOM05D001248 ORTHO05D001183 1.7e-09 68.6 151 39.7
SEGI_16601 Sequoiadendron giganteum HOM05D001800 ORTHO05D000007 2.2e-09 68.2 154 42.2
PSO063G2741 Papaver somniferum HOM05D006250 ORTHO05D007107 2.8e-09 67.8 233 80.3
PSO832G4030 Papaver somniferum HOM05D006250 ORTHO05D007107 2.8e-09 67.8 233 80.3
Zm00001eb371900 Zea mays HOM05D006250 ORTHO05D007107 1.4e-08 65.5 245 75.5
SEGI_02293 Sequoiadendron giganteum HOM05D000005 ORTHO05D000239 2.4e-08 64.7 162 40.1
Nn3g16985 Nelumbo nucifera HOM05D006250 ORTHO05D007107 5.3e-08 63.5 240 59.6
Lj6A800T42 Lonicera japonica HOM05D006250 ORTHO05D007107 6.9e-08 63.2 233 79.0
SEGI_11009 Sequoiadendron giganteum HOM05D001872 ORTHO05D001859 6.9e-08 63.2 154 41.6
ECA246G3811 Erigeron canadensis HOM05D006250 ORTHO05D007107 9.1e-08 62.8 70 78.6
Lsat_1_v5_gn_3_49600 Lactuca sativa HOM05D006250 ORTHO05D007107 9.1e-08 62.8 70 78.6
Glyma.02G029800 Glycine max HOM05D006250 ORTHO05D007107 1.5e-07 62.0 225 80.4
SEGI_24544 Sequoiadendron giganteum HOM05D003822 ORTHO05D004484 1.5e-07 62.0 147 38.1
FAN12G0989 Fragaria x ananassa HOM05D006250 ORTHO05D007107 2.0e-07 61.6 89 42.7
AagrBONN_evm.TU.Sc2ySwM_344.3920 Anthoceros agrestis HOM05D006250 ORTHO05D007107 2.6e-07 61.2 41 65.9
SMO116G0024 Selaginella moellendorffii HOM05D006250 ORTHO05D007107 2.6e-07 61.2 233 77.7
A08p33910 Brassica napus HOM05D006250 ORTHO05D007107 3.4e-07 60.8 95 60.0
HanXRQChr10g0288221 Helianthus annuus HOM05D006250 ORTHO05D007107 4.5e-07 60.5 70 77.1
SEGI_31148 Sequoiadendron giganteum HOM05D000018 ORTHO05D000187 4.5e-07 60.5 151 41.1
TAR629G0016 Trochodendron aralioides HOM05D006250 ORTHO05D007107 5.9e-07 60.1 213 42.7
VMungo0720G1586 Vigna mungo HOM05D006250 ORTHO05D007107 5.9e-07 60.1 225 79.6
MELO3C002989.2 Cucumis melo HOM05D006250 ORTHO05D007107 7.7e-07 59.7 68 77.9
Hund05952 Selenicereus undatus HOM05D006250 ORTHO05D007107 7.7e-07 59.7 72 79.2
SEGI_11545 Sequoiadendron giganteum HOM05D001800 ORTHO05D000007 7.7e-07 59.7 147 38.1
Ah.03g132320 Amaranthus hybridus HOM05D006250 ORTHO05D007107 1.0e-06 59.3 91 42.9
SEGI_31339 Sequoiadendron giganteum HOM05D000639 ORTHO05D003485 1.0e-06 59.3 82 41.5
C08p13750 Brassica napus HOM05D006250 ORTHO05D007107 1.3e-06 58.9 70 75.7
Glyma.01G036200 Glycine max HOM05D006250 ORTHO05D007107 1.3e-06 58.9 225 79.1
SEGI_17063 Sequoiadendron giganteum HOM05D005165 ORTHO05D006361 1.3e-06 58.9 171 35.7
SEGI_29245 Sequoiadendron giganteum HOM05D002007 ORTHO05D000355 2.2e-06 58.2 154 36.4
SEGI_23007 Sequoiadendron giganteum HOM05D001800 ORTHO05D000007 2.9e-06 57.8 173 38.7
ClCG09G022110 Citrullus lanatus HOM05D006250 ORTHO05D007107 3.8e-06 57.4 67 77.6
SEGI_06075 Sequoiadendron giganteum HOM05D001800 ORTHO05D000007 3.8e-06 57.4 110 43.6
THA.LOC104816735 Tarenaya hassleriana HOM05D006250 ORTHO05D007107 3.8e-06 57.4 68 76.5
TAR629G0559 Trochodendron aralioides HOM05D006250 ORTHO05D007107 3.8e-06 57.4 32 75.0
CsaV3_5G025030 Cucumis sativus L. HOM05D006250 ORTHO05D007107 5.0e-06 57.0 68 76.5
VMungo1215G1343 Vigna mungo HOM05D006250 ORTHO05D007107 5.0e-06 57.0 69 72.5
SEGI_07003 Sequoiadendron giganteum HOM05D001087 ORTHO05D005406 6.5e-06 56.6 107 31.8


User provided reference genes

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