Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_34612 Sequoiadendron giganteum HOM05D007025 ORTHO05D008862 1.1e-77 293.1 139 100.0
Nn5g26960 Nelumbo nucifera HOM05D007025 ORTHO05D008862 3.6e-12 75.5 45 66.7
Lj1A680T12 Lonicera japonica HOM05D007025 ORTHO05D008862 1.8e-11 73.2 43 65.1
PGR102G0249 Punica granatum HOM05D007025 ORTHO05D008862 1.8e-11 73.2 43 67.4
TAR374G1462 Trochodendron aralioides HOM05D007025 ORTHO05D008862 2.4e-11 72.8 53 56.6
AUR62001808 Chenopodium quinoa HOM05D002150 ORTHO05D002191 6.9e-11 71.2 43 62.8
AUR62009594 Chenopodium quinoa HOM05D007025 ORTHO05D002191 6.9e-11 71.2 43 62.8
Lsat_1_v5_gn_2_83821 Lactuca sativa HOM05D007025 ORTHO05D008862 9.0e-11 70.9 97 38.1
Thecc.09G323800 Theobroma cacao HOM05D007025 ORTHO05D008862 1.2e-10 70.5 45 57.8
Nitab4.5_0004078g0030 Nicotiana tabacum HOM05D007025 ORTHO05D008862 1.5e-10 70.1 56 51.8
Peaxi162Scf00406g00059 Petunia axillaris HOM05D007025 ORTHO05D008862 1.5e-10 70.1 56 51.8
ATR0800G159 Amborella trichopoda HOM05D007025 ORTHO05D008862 2.0e-10 69.7 40 72.5
ClCG08G009640 Citrullus lanatus HOM05D007025 ORTHO05D008862 2.0e-10 69.7 43 60.5
Duzib168G1407 Durio zibethinus HOM05D007025 ORTHO05D008862 2.0e-10 69.7 56 51.8
Eucgr.J02059 Eucalyptus grandis HOM05D007025 ORTHO05D008862 2.0e-10 69.7 43 62.8
Nitab4.5_0001800g0060 Nicotiana tabacum HOM05D007025 ORTHO05D008862 2.0e-10 69.7 56 51.8
Solyc11g066070.2 Solanum lycopersicum HOM05D007025 ORTHO05D008862 2.0e-10 69.7 56 51.8
Sopen11g025810 Solanum pennellii HOM05D007025 ORTHO05D008862 2.0e-10 69.7 56 51.8
PGSC0003DMG400000442 Solanum tuberosum HOM05D007025 ORTHO05D008862 2.0e-10 69.7 56 51.8
Sed0024062 Sechium edule HOM05D007025 ORTHO05D008862 2.6e-10 69.3 45 55.6
Hma1.2p1_1888F.1_g306550 Hydrangea macrophylla HOM05D007025 ORTHO05D008862 3.4e-10 68.9 43 65.1
Solyc06g076010.3 Solanum lycopersicum HOM05D007025 ORTHO05D008862 3.4e-10 68.9 56 55.4
Sopen06g032420 Solanum pennellii HOM05D007025 ORTHO05D008862 3.4e-10 68.9 56 55.4
GSVIVG01024988001 Vitis vinifera HOM05D007025 ORTHO05D008862 3.4e-10 68.9 45 60.0
EL10Ac7g15997 Beta vulgaris HOM05D007025 ORTHO05D008862 4.4e-10 68.6 43 60.5
Ciclev10003169m.g Citrus clementina HOM05D007025 ORTHO05D008862 4.4e-10 68.6 42 61.9
CSS0049041 Camellia sinensis var. sinensis HOM05D007025 ORTHO05D008862 5.8e-10 68.2 43 60.5
CiPaw.14G069900 Carya illinoinensis HOM05D007025 ORTHO05D008862 5.8e-10 68.2 45 57.8
Gohir.A03G041000 Gossypium hirsutum HOM05D007025 ORTHO05D008862 5.8e-10 68.2 42 59.5
Gohir.D03G127100 Gossypium hirsutum HOM05D007025 ORTHO05D008862 5.8e-10 68.2 42 61.9
Gorai.003G133500 Gossypium raimondii HOM05D007025 ORTHO05D008862 5.8e-10 68.2 42 61.9
Lsat_1_v5_gn_5_79400 Lactuca sativa HOM05D007025 ORTHO05D008862 5.8e-10 68.2 43 58.1
QL10p005425 Quercus lobata HOM05D007025 ORTHO05D008862 5.8e-10 68.2 45 60.0
unitig_749.g14331 Utricularia gibba HOM05D007025 ORTHO05D008862 5.8e-10 68.2 45 57.8
CAN.G764.4 Capsicum annuum HOM05D007025 ORTHO05D008862 7.6e-10 67.8 56 50.0
SGA_v2.0_scaffold118G32439 Striga asiatica HOM05D007025 ORTHO05D008862 7.6e-10 67.8 56 50.0
CsaV3_6G031770 Cucumis sativus L. HOM05D007025 ORTHO05D008862 1.3e-09 67.0 45 55.6
PSO384G2653 Papaver somniferum HOM05D007025 ORTHO05D008862 1.3e-09 67.0 46 56.5
Hund04979 Selenicereus undatus HOM05D007025 ORTHO05D008862 1.7e-09 66.6 43 60.5
CiPaw.09G091100 Carya illinoinensis HOM05D007025 ORTHO05D008862 2.2e-09 66.2 43 58.1
QL06p002232 Quercus lobata HOM05D007025 ORTHO05D008862 2.2e-09 66.2 45 55.6
TWI79G0521 Tripterygium wilfordii HOM05D007025 ORTHO05D008862 2.2e-09 66.2 56 48.2
MELO3C026555.2 Cucumis melo HOM05D007025 ORTHO05D008862 2.9e-09 65.9 45 55.6
Rhsim09G0044100 Rhododendron simsii HOM05D007025 ORTHO05D008862 2.9e-09 65.9 45 53.3
vmacro00530 Vaccinium macrocarpon HOM05D007025 ORTHO05D008862 3.8e-09 65.5 42 57.1
Cc01_g12710 Coffea canephora HOM05D007025 ORTHO05D008862 4.9e-09 65.1 43 60.5
ECA238G2407 Erigeron canadensis HOM05D007025 ORTHO05D008862 4.9e-09 65.1 43 55.8
SGA_v2.0_scaffold24G10508 Striga asiatica HOM05D007025 ORTHO05D008862 4.9e-09 65.1 41 61.0
Aqoxy1G00724 Aquilegia oxysepala HOM05D007025 ORTHO05D008862 1.1e-08 63.9 43 55.8
CiPaw.13G095900 Carya illinoinensis HOM05D007025 ORTHO05D008862 1.1e-08 63.9 43 55.8
Aqoxy7G01971 Aquilegia oxysepala HOM05D007025 ORTHO05D008862 1.4e-08 63.5 43 55.8
COL.COLO4_20470 Corchorus olitorius HOM05D007025 ORTHO05D008862 1.9e-08 63.2 45 51.1
SEGI_24734 Sequoiadendron giganteum HOM05D000824 ORTHO05D002221 1.9e-08 63.2 38 73.7
Manes.04G033800 Manihot esculenta HOM05D007025 ORTHO05D008862 2.4e-08 62.8 42 57.1
Cpa.g.sc840.2 Carica papaya HOM05D007025 ORTHO05D008862 3.2e-08 62.4 42 59.5
CANSAT54G1063 Cannabis sativa HOM05D007025 ORTHO05D008862 7.1e-08 61.2 43 55.8
Prupe.6G079900 Prunus persica HOM05D007025 ORTHO05D008862 7.1e-08 61.2 43 55.8
Lalb_Chr12g0209151 Lupinus albus HOM05D007025 ORTHO05D008862 9.3e-08 60.8 56 46.4
MD11G1111500 Malus domestica HOM05D007025 ORTHO05D008862 9.3e-08 60.8 41 61.0
Lalb_Chr12g0209181 Lupinus albus HOM05D007025 ORTHO05D008862 1.2e-07 60.5 56 46.4
Atru.chr3.3859 Acer truncatum HOM05D007025 ORTHO05D008862 1.6e-07 60.1 56 44.6
Migut.C01196 Erythranthe guttata HOM05D007025 ORTHO05D008862 1.6e-07 60.1 56 46.4
SHI05954 Sapria himalayana HOM05D007025 ORTHO05D008862 1.6e-07 60.1 41 58.5
Cfa003375 Carpinus fangiana HOM05D007025 ORTHO05D008862 2.1e-07 59.7 56 44.6
Haze_24077 Corylus avellana HOM05D007025 ORTHO05D008862 2.1e-07 59.7 56 44.6
RcHm_v2.0_Chr5g0006711 Rosa chinensis HOM05D007025 ORTHO05D008862 2.1e-07 59.7 45 57.8
RcHm_v2.0_Chr5g0063941 Rosa chinensis HOM05D007025 ORTHO05D008862 2.1e-07 59.7 45 57.8
FAN24G0628 Fragaria x ananassa HOM05D007025 ORTHO05D008862 2.7e-07 59.3 112 35.7
Thhalv10011908m.g Eutrema salsugineum HOM05D007025 ORTHO05D008862 3.5e-07 58.9 81 40.7
Glyma.05G134100 Glycine max HOM05D007025 ORTHO05D008862 3.5e-07 58.9 56 42.9
MD02G1271300 Malus domestica HOM05D007025 ORTHO05D008862 3.5e-07 58.9 41 58.5
THA.LOC104810785 Tarenaya hassleriana HOM05D007025 ORTHO05D008862 3.5e-07 58.9 49 51.0
AL1G53430 Arabidopsis lyrata HOM05D007025 ORTHO05D008862 4.6e-07 58.5 49 51.0
AT1G47278 Arabidopsis thaliana HOM05D007025 ORTHO05D008862 4.6e-07 58.5 49 51.0
Carub.0001s3607 Capsella rubella HOM05D007025 ORTHO05D008862 4.6e-07 58.5 41 56.1
arahy.Tifrunner.gnm1.ann1.UND1EB Arachis hypogaea HOM05D007025 ORTHO05D008862 6.0e-07 58.2 49 46.9
Lj1g0011371 Lotus japonicus HOM05D007025 ORTHO05D008862 6.0e-07 58.2 49 49.0
Lj4g0013158 Lotus japonicus HOM05D007025 ORTHO05D008862 6.0e-07 58.2 49 49.0
FvH4_3g35770 Fragaria vesca HOM05D007025 ORTHO05D008862 1.0e-06 57.4 45 55.6
FAN11G3513 Fragaria x ananassa HOM05D007025 ORTHO05D008862 1.0e-06 57.4 45 55.6
FAN16G3493 Fragaria x ananassa HOM05D007025 ORTHO05D008862 1.0e-06 57.4 45 55.6
FAN25G2181 Fragaria x ananassa HOM05D007025 ORTHO05D008862 1.0e-06 57.4 45 55.6
Glyma.08G088800 Glycine max HOM05D007025 ORTHO05D008862 1.0e-06 57.4 56 41.1
arahy.Tifrunner.gnm1.ann1.XVFR0N Arachis hypogaea HOM05D007025 ORTHO05D008862 1.3e-06 57.0 49 44.9
Aa31sc152G30 Aethionema arabicum HOM05D007025 ORTHO05D008862 2.3e-06 56.2 41 51.2
CARHR036850 Cardamine hirsuta HOM05D007025 ORTHO05D008862 2.3e-06 56.2 42 57.1
CDE11G0504 Ceratophyllum demersum HOM05D007025 ORTHO05D008862 2.3e-06 56.2 45 51.1
Medtr4g094750 Medicago truncatula HOM05D007025 ORTHO05D008862 2.3e-06 56.2 49 44.9
Psat7g087480 Pisum sativum HOM05D007025 ORTHO05D008862 2.3e-06 56.2 49 44.9
Phvul.002G188200 Phaseolus vulgaris HOM05D007025 ORTHO05D008862 3.0e-06 55.8 56 41.1
Sp1g34420 Schrenkiella parvula HOM05D007025 ORTHO05D008862 3.9e-06 55.5 41 56.1
TAR583G0002 Trochodendron aralioides HOM05D000047 ORTHO05D000044 3.9e-06 55.5 43 55.8
BcaB04g17532 Brassica carinata HOM05D007025 ORTHO05D008862 5.1e-06 55.1 81 38.3
BcaC07g37223 Brassica carinata HOM05D007025 ORTHO05D008862 5.1e-06 55.1 81 38.3
A08p05760 Brassica napus HOM05D007025 ORTHO05D008862 5.1e-06 55.1 81 38.3
C08p06430 Brassica napus HOM05D007025 ORTHO05D008862 5.1e-06 55.1 81 38.3
BraA08t32579Z Brassica rapa HOM05D007025 ORTHO05D008862 5.1e-06 55.1 81 38.3
SEGI_09850 Sequoiadendron giganteum HOM05D000047 ORTHO05D000044 5.1e-06 55.1 38 65.8
FAN21G1635 Fragaria x ananassa HOM05D007025 ORTHO05D008862 6.6e-06 54.7 45 53.3
Os08g0422300 Oryza sativa ssp. japonica HOM05D007025 ORTHO05D008862 6.6e-06 54.7 44 50.0
Os03g0276700 Oryza sativa ssp. japonica HOM05D007025 ORTHO05D008862 8.7e-06 54.3 44 50.0
PSO210G2489 Papaver somniferum HOM05D000047 ORTHO05D000044 8.7e-06 54.3 43 58.1


User provided reference genes

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