Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_34495 Sequoiadendron giganteum HOM05D007382 ORTHO05D009012 1.9e-98 362.5 179 100.0
Ciclev10012925m.g Citrus clementina HOM05D007382 ORTHO05D009012 3.1e-24 115.9 167 42.5
MBI04_g28758_MAGBIO Magnolia biondii HOM05D007382 ORTHO05D009012 1.3e-22 110.5 165 38.8
MBI04_g38440_MAGBIO Magnolia biondii HOM05D007382 ORTHO05D009012 1.7e-22 110.2 165 38.8
TAR369G0081 Trochodendron aralioides HOM05D007382 ORTHO05D009012 5.0e-22 108.6 163 42.3
Migut.J00393 Erythranthe guttata HOM05D007382 ORTHO05D009012 8.5e-22 107.8 157 38.9
Os01g0835600 Oryza sativa ssp. japonica HOM05D007382 ORTHO05D009012 8.5e-22 107.8 139 46.0
AUR62042292 Chenopodium quinoa HOM05D002855 ORTHO05D009012 1.1e-21 107.5 126 46.0
Thecc.05G050100 Theobroma cacao HOM05D007382 ORTHO05D009012 3.2e-21 105.9 134 44.8
Eucgr.A01209 Eucalyptus grandis HOM05D007382 ORTHO05D009012 7.2e-21 104.8 160 41.2
Potri.006G216000 Populus trichocarpa HOM05D007382 ORTHO05D009012 9.4e-21 104.4 150 42.7
Prupe.6G245200 Prunus persica HOM05D007382 ORTHO05D009012 9.4e-21 104.4 166 41.6
Phvul.001G173000 Phaseolus vulgaris HOM05D007382 ORTHO05D009012 1.6e-20 103.6 125 44.0
Duzib093G1372 Durio zibethinus HOM05D007382 ORTHO05D009012 2.1e-20 103.2 157 40.8
Sabra06G0166500 Salix brachista HOM05D007382 ORTHO05D009012 2.1e-20 103.2 168 41.1
CANSAT80G2903 Cannabis sativa HOM05D007382 ORTHO05D009012 4.7e-20 102.1 152 42.8
Haze_20685 Corylus avellana HOM05D007382 ORTHO05D009012 6.1e-20 101.7 168 37.5
Lsat_1_v5_gn_2_110741 Lactuca sativa HOM05D007382 ORTHO05D009012 6.1e-20 101.7 150 41.3
Oeu029114.1 Olea europaea HOM05D007382 ORTHO05D009012 6.1e-20 101.7 175 39.4
Cfa017470 Carpinus fangiana HOM05D007382 ORTHO05D009012 8.0e-20 101.3 168 37.5
Lsat_1_v5_gn_2_111101 Lactuca sativa HOM05D007382 ORTHO05D009012 1.0e-19 100.9 150 41.3
Glyma.03G175900 Glycine max HOM05D007382 ORTHO05D009012 1.4e-19 100.5 162 38.9
Hma1.2p1_0111F.1_g053520 Hydrangea macrophylla HOM05D007382 ORTHO05D009012 1.8e-19 100.1 170 38.8
CiPaw.10G139200 Carya illinoinensis HOM05D007382 ORTHO05D009012 2.3e-19 99.8 172 37.8
COL.COLO4_10307 Corchorus olitorius HOM05D007382 ORTHO05D009012 2.3e-19 99.8 156 39.1
CSS0017861 Camellia sinensis var. sinensis HOM05D007382 ORTHO05D009012 3.0e-19 99.4 132 46.2
Manes.09G071800 Manihot esculenta HOM05D007382 ORTHO05D009012 3.0e-19 99.4 173 36.4
Nn3g20330 Nelumbo nucifera HOM05D007382 ORTHO05D009012 3.0e-19 99.4 137 42.3
Dinv37282 Davidia involucrata HOM05D007382 ORTHO05D009012 4.0e-19 99.0 156 41.7
HanXRQChr07g0195861 Helianthus annuus HOM05D007382 ORTHO05D009012 5.2e-19 98.6 168 38.1
MD12G1130200 Malus domestica HOM05D007382 ORTHO05D009012 5.2e-19 98.6 173 39.3
AUR62036838 Chenopodium quinoa HOM05D007382 ORTHO05D009012 6.8e-19 98.2 175 40.0
VMungo1383G3160 Vigna mungo HOM05D007382 ORTHO05D009012 8.8e-19 97.8 140 40.0
Glyma.19G176400 Glycine max HOM05D007382 ORTHO05D009012 1.5e-18 97.1 163 38.0
Lsat_1_v5_gn_2_110841 Lactuca sativa HOM05D007382 ORTHO05D009012 1.5e-18 97.1 148 40.5
Sp5g04630 Schrenkiella parvula HOM05D007382 ORTHO05D009012 1.5e-18 97.1 123 43.1
Zm00001eb148770 Zea mays HOM05D007382 ORTHO05D009012 1.5e-18 97.1 139 41.7
Gohir.D04G117000 Gossypium hirsutum HOM05D007382 ORTHO05D009012 2.0e-18 96.7 159 37.7
Gorai.009G421900 Gossypium raimondii HOM05D007382 ORTHO05D009012 2.0e-18 96.7 159 37.7
MSTRG.19120 Avicennia marina HOM05D007382 ORTHO05D009012 2.6e-18 96.3 148 39.2
Aa31LG10G12820 Aethionema arabicum HOM05D007382 ORTHO05D009012 3.4e-18 95.9 136 39.7
Ca_08808_v3 Cicer arietinum L. HOM05D007382 ORTHO05D009012 3.4e-18 95.9 166 35.5
GSVIVG01025574001 Vitis vinifera HOM05D002855 ORTHO05D009676 3.4e-18 95.9 170 38.2
Nitab4.5_0007103g0020 Nicotiana tabacum HOM05D007382 ORTHO05D009012 5.7e-18 95.1 144 41.0
Gohir.A04G077800 Gossypium hirsutum HOM05D007382 ORTHO05D009012 7.5e-18 94.7 159 37.7
Hma1.2p1_0111F.1_g053480 Hydrangea macrophylla HOM05D007382 ORTHO05D009012 7.5e-18 94.7 170 37.1
ATR0709G053 Amborella trichopoda HOM05D007382 ORTHO05D009012 9.8e-18 94.4 107 47.7
CAN.G435.4 Capsicum annuum HOM05D007382 ORTHO05D009012 9.8e-18 94.4 117 45.3
Cc06_g15490 Coffea canephora HOM05D007382 ORTHO05D009012 9.8e-18 94.4 135 41.5
Nn2g10574 Nelumbo nucifera HOM05D007382 ORTHO05D009012 9.8e-18 94.4 145 40.0
TWI77G0838 Tripterygium wilfordii HOM05D007382 ORTHO05D009012 1.7e-17 93.6 123 43.1
Ah.08g212080 Amaranthus hybridus HOM05D007382 ORTHO05D009012 2.8e-17 92.8 153 41.2
HanXRQChr10g0297271 Helianthus annuus HOM05D007382 ORTHO05D009012 2.8e-17 92.8 145 40.0
QL07p045887 Quercus lobata HOM05D007382 ORTHO05D009012 2.8e-17 92.8 164 36.6
BcaB02g08277 Brassica carinata HOM05D007382 ORTHO05D009012 3.7e-17 92.4 119 43.7
AL5G39780 Arabidopsis lyrata HOM05D007382 ORTHO05D009012 4.8e-17 92.0 122 40.2
BcaC02g09988 Brassica carinata HOM05D007382 ORTHO05D009012 6.3e-17 91.7 117 42.7
PSO384G2862 Papaver somniferum HOM05D007382 ORTHO05D009012 6.3e-17 91.7 195 34.4
SGA_v2.0_scaffold126G33863 Striga asiatica HOM05D007382 ORTHO05D009012 6.3e-17 91.7 161 37.3
Hund10951 Selenicereus undatus HOM05D007382 ORTHO05D009012 8.3e-17 91.3 170 39.4
Sc01g0003740 Simmondsia chinensis HOM05D007382 ORTHO05D009012 1.1e-16 90.9 158 39.9
Carub.0005s2494 Capsella rubella HOM05D007382 ORTHO05D009012 1.4e-16 90.5 123 39.0
ECA238G1385 Erigeron canadensis HOM05D007382 ORTHO05D009012 1.4e-16 90.5 138 39.9
Peaxi162Scf00472g00081 Petunia axillaris HOM05D007382 ORTHO05D009012 1.8e-16 90.1 146 41.8
FvH4_6g14870 Fragaria vesca HOM05D007382 ORTHO05D009012 3.1e-16 89.4 156 41.7
FAN05G3594 Fragaria x ananassa HOM05D007382 ORTHO05D009012 3.1e-16 89.4 176 39.2
FAN14G4413 Fragaria x ananassa HOM05D002855 ORTHO05D009012 3.1e-16 89.4 156 41.7
Solyc07g014660.3 Solanum lycopersicum HOM05D007382 ORTHO05D009012 3.1e-16 89.4 131 40.5
AT3G58090 Arabidopsis thaliana HOM05D000180 ORTHO05D000099 4.1e-16 89.0 111 41.4
Psat7g058560 Pisum sativum HOM05D007382 ORTHO05D009012 4.1e-16 89.0 138 39.9
Sopen07g005520 Solanum pennellii HOM05D007382 ORTHO05D009012 4.1e-16 89.0 131 40.5
Sed0019756 Sechium edule HOM05D007382 ORTHO05D009012 5.4e-16 88.6 151 41.1
EL10Ac7g17270 Beta vulgaris HOM05D007382 ORTHO05D009012 7.0e-16 88.2 173 35.8
RcHm_v2.0_Chr3g0468081 Rosa chinensis HOM05D007382 ORTHO05D009012 9.1e-16 87.8 162 37.7
Sopen10g033880 Solanum pennellii HOM05D007382 ORTHO05D009012 9.1e-16 87.8 131 40.5
PGSC0003DMG401010988 Solanum tuberosum HOM05D007382 ORTHO05D009012 9.1e-16 87.8 145 40.0
HPP92_019795 Vanilla planifolia HOM05D007382 ORTHO05D009012 9.1e-16 87.8 137 36.5
Nitab4.5_0000202g0370 Nicotiana tabacum HOM05D007382 ORTHO05D009012 1.2e-15 87.4 158 38.0
CARHR168440 Cardamine hirsuta HOM05D007382 ORTHO05D009012 1.6e-15 87.0 107 41.1
FAN09G0189 Fragaria x ananassa HOM05D007382 ORTHO05D009012 2.7e-15 86.3 154 40.3
FAN09G4246 Fragaria x ananassa HOM05D005749 ORTHO05D007208 2.7e-15 86.3 154 40.3
Medtr7g100230 Medicago truncatula HOM05D007382 ORTHO05D009012 2.7e-15 86.3 169 35.5
Solyc10g084440.3 Solanum lycopersicum HOM05D007382 ORTHO05D009012 3.5e-15 85.9 146 38.4
BolC4t24990H Brassica oleracea HOM05D000180 ORTHO05D000099 4.5e-15 85.5 106 43.4
MELO3C003080.2 Cucumis melo HOM05D007382 ORTHO05D009012 4.5e-15 85.5 148 37.2
CsaV3_4G024470 Cucumis sativus L. HOM05D007382 ORTHO05D009012 4.5e-15 85.5 148 37.2
PGSC0003DMG400038088 Solanum tuberosum HOM05D007382 ORTHO05D009012 4.5e-15 85.5 117 43.6
C04p34300 Brassica napus HOM05D000180 ORTHO05D000099 5.9e-15 85.1 106 43.4
ClCG04G008690 Citrullus lanatus HOM05D007382 ORTHO05D009012 1.0e-14 84.3 154 39.0
Aqoxy5G00351 Aquilegia oxysepala HOM05D007382 ORTHO05D009012 1.3e-14 84.0 152 34.9
Lj1g0005181 Lotus japonicus HOM05D007382 ORTHO05D009012 1.7e-14 83.6 162 34.6
Sopen09g026050 Solanum pennellii HOM05D007382 ORTHO05D009012 1.7e-14 83.6 131 39.7
A04p02730 Brassica napus HOM05D000180 ORTHO05D000099 1.1e-13 80.9 141 37.6
BraA04t15999Z Brassica rapa HOM05D000180 ORTHO05D000099 1.1e-13 80.9 141 37.6
TPR.G21464 Trifolium pratense HOM05D007382 ORTHO05D009012 1.5e-13 80.5 181 32.0
Sed0025265 Sechium edule HOM05D007382 ORTHO05D009012 1.9e-13 80.1 151 37.7
CDE05G2022 Ceratophyllum demersum HOM05D007382 ORTHO05D009012 3.2e-13 79.3 160 36.2
PGSC0003DMG400037466 Solanum tuberosum HOM05D007382 ORTHO05D009012 1.6e-12 77.0 127 37.8
Medtr7g100200 Medicago truncatula HOM05D007382 ORTHO05D009012 4.7e-12 75.5 149 36.2
VMungo1080G1211 Vigna mungo HOM05D007382 ORTHO05D009012 1.0e-11 74.3 66 50.0
CDE09G1151 Ceratophyllum demersum HOM05D007382 ORTHO05D009012 1.8e-11 73.6 142 35.2
PGSC0003DMG400035622 Solanum tuberosum HOM05D007382 ORTHO05D009012 4.0e-11 72.4 121 38.0
unitig_744.g24666 Utricularia gibba HOM05D007382 ORTHO05D009012 6.8e-11 71.6 146 34.2
SMO147G0006 Selaginella moellendorffii HOM05D016889 ORTHO05D026570 1.5e-10 70.5 120 35.8
CiPaw.15G123900 Carya illinoinensis HOM05D007382 ORTHO05D009012 7.5e-10 68.2 154 33.8
Lalb_Chr20g0113021 Lupinus albus HOM05D007382 ORTHO05D009012 7.5e-10 68.2 92 41.3
Lalb_Chr25g0289341 Lupinus albus HOM05D007382 ORTHO05D009012 8.3e-09 64.7 83 41.0
AUR62043938 Chenopodium quinoa HOM05D002855 ORTHO05D004406 1.4e-08 63.9 121 34.7
Pp3c14_21840 Physcomitrium patens HOM05D016889 ORTHO05D009012 1.4e-08 63.9 101 41.6
SEGI_03776 Sequoiadendron giganteum HOM05D016889 ORTHO05D009012 3.1e-08 62.8 75 41.3
ATR0665G317 Amborella trichopoda HOM05D007382 ORTHO05D009012 4.1e-08 62.4 134 35.1
Pp3c17_18030 Physcomitrium patens HOM05D016889 ORTHO05D026570 4.1e-08 62.4 90 37.8
SEGI_22784 Sequoiadendron giganteum HOM05D016889 ORTHO05D009012 5.4e-08 62.0 55 47.3
CDE12G0689 Ceratophyllum demersum HOM05D007382 ORTHO05D009012 1.6e-07 60.5 96 38.5
ATR0829G079 Amborella trichopoda HOM05D016889 ORTHO05D026570 3.5e-07 59.3 57 49.1
CBR_g41746 Chara braunii HOM05D007382 ORTHO05D009012 4.5e-07 58.9 94 41.5
TAR633G0943 Trochodendron aralioides HOM05D007382 ORTHO05D009012 5.0e-06 55.5 111 36.9


User provided reference genes

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