Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_34361 Sequoiadendron giganteum HOM05D003418 ORTHO05D004105 3.4e-68 261.5 132 100.0
SEGI_10840 Sequoiadendron giganteum HOM05D003418 ORTHO05D004105 2.9e-11 72.4 91 46.2
TAR629G2062 Trochodendron aralioides HOM05D003418 ORTHO05D004105 2.5e-10 69.3 105 40.0
MBI11_g22683_MAGBIO Magnolia biondii HOM05D003418 ORTHO05D004105 4.2e-10 68.6 96 45.8
Nitab4.5_0000067g0190 Nicotiana tabacum HOM05D003418 ORTHO05D004105 9.4e-10 67.4 103 44.7
TAR374G1678 Trochodendron aralioides HOM05D003418 ORTHO05D004105 9.4e-10 67.4 106 40.6
DCAR_024672 Daucus carota HOM05D003418 ORTHO05D004105 3.6e-09 65.5 95 42.1
Hma1.2p1_0065F.1_g035230 Hydrangea macrophylla HOM05D003418 ORTHO05D004105 3.6e-09 65.5 126 35.7
CAN.G7.14 Capsicum annuum HOM05D003418 ORTHO05D004105 6.1e-09 64.7 105 42.9
ATR0561G224 Amborella trichopoda HOM05D003418 ORTHO05D004105 1.8e-08 63.2 104 37.5
Phvul.L003346 Phaseolus vulgaris HOM05D003418 ORTHO05D004105 1.8e-08 63.2 97 42.3
Nn4g22281 Nelumbo nucifera HOM05D003418 ORTHO05D004105 2.3e-08 62.8 108 36.1
CSS0043963 Camellia sinensis var. sinensis HOM05D003418 ORTHO05D004105 4.0e-08 62.0 102 41.2
PGSC0003DMG400013209 Solanum tuberosum HOM05D003418 ORTHO05D004105 4.0e-08 62.0 104 43.3
VMungo0251G0083 Vigna mungo HOM05D003418 ORTHO05D004105 4.0e-08 62.0 97 42.3
Cc11_g17090 Coffea canephora HOM05D003418 ORTHO05D004105 5.2e-08 61.6 112 36.6
Sed0009671 Sechium edule HOM05D003418 ORTHO05D004105 5.2e-08 61.6 97 41.2
Ciclev10032970m.g Citrus clementina HOM05D003418 ORTHO05D004105 6.7e-08 61.2 103 39.8
Sc11g0000380 Simmondsia chinensis HOM05D003418 ORTHO05D004105 6.7e-08 61.2 112 36.6
MELO3C022314.2 Cucumis melo HOM05D003418 ORTHO05D004105 8.8e-08 60.8 97 39.2
Cc07_g00970 Coffea canephora HOM05D003418 ORTHO05D004105 1.2e-07 60.5 98 32.7
Lsat_1_v5_gn_2_93281 Lactuca sativa HOM05D003418 ORTHO05D004105 1.2e-07 60.5 109 36.7
Nn3g16424 Nelumbo nucifera HOM05D003418 ORTHO05D004105 1.2e-07 60.5 100 37.0
Psat7g077520 Pisum sativum HOM05D003418 ORTHO05D004105 1.2e-07 60.5 104 38.5
CsaV3_6G008230 Cucumis sativus L. HOM05D003418 ORTHO05D004105 1.5e-07 60.1 97 39.2
Glyma.05G148600 Glycine max HOM05D003418 ORTHO05D004105 1.5e-07 60.1 96 41.7
Manes.13G009900 Manihot esculenta HOM05D003418 ORTHO05D004105 1.5e-07 60.1 101 38.6
Lsat_1_v5_gn_4_781 Lactuca sativa HOM05D003418 ORTHO05D004105 2.0e-07 59.7 101 40.6
HanXRQChr06g0174711 Helianthus annuus HOM05D003418 ORTHO05D004105 2.6e-07 59.3 98 39.8
Nitab4.5_0012747g0020 Nicotiana tabacum HOM05D003418 ORTHO05D004105 3.3e-07 58.9 98 43.9
Sed0026789 Sechium edule HOM05D003418 ORTHO05D004105 3.3e-07 58.9 96 39.6
PSO478G1430 Papaver somniferum HOM05D003418 ORTHO05D004105 5.7e-07 58.2 114 33.3
SalBow8G1362 Salvia bowleyana HOM05D003418 ORTHO05D004105 7.5e-07 57.8 93 37.6
Glyma.11G252200 Glycine max HOM05D003418 ORTHO05D004105 9.7e-07 57.4 88 44.3
PSO017G5034 Papaver somniferum HOM05D003418 ORTHO05D004105 9.7e-07 57.4 114 33.3
SGA_v2.0_scaffold87G27173 Striga asiatica HOM05D003418 ORTHO05D004105 9.7e-07 57.4 98 39.8
Zm00001eb102460 Zea mays HOM05D003418 ORTHO05D004105 9.7e-07 57.4 87 37.9
Glyma.18G004900 Glycine max HOM05D003418 ORTHO05D004105 1.3e-06 57.0 96 40.6
HanXRQChr05g0128721 Helianthus annuus HOM05D003418 ORTHO05D004105 1.3e-06 57.0 97 37.1
Hma1.2p1_0275F.1_g110610 Hydrangea macrophylla HOM05D003418 ORTHO05D004105 1.3e-06 57.0 106 35.8
TPR.G17100 Trifolium pratense HOM05D003418 ORTHO05D004105 1.3e-06 57.0 97 40.2
Aqoxy3G01580 Aquilegia oxysepala HOM05D003418 ORTHO05D004105 1.7e-06 56.6 118 33.1
EL10Ac6g13525 Beta vulgaris HOM05D003418 ORTHO05D004105 1.7e-06 56.6 98 38.8
Oeu056671.1 Olea europaea HOM05D003418 ORTHO05D004105 2.2e-06 56.2 100 39.0
Phvul.001G263300 Phaseolus vulgaris HOM05D003418 ORTHO05D004105 2.2e-06 56.2 95 41.1
CiPaw.03G057000 Carya illinoinensis HOM05D003418 ORTHO05D004105 2.8e-06 55.8 101 38.6
MELO3C017764.2 Cucumis melo HOM05D003418 ORTHO05D004105 2.8e-06 55.8 94 41.5
Dinv11681 Davidia involucrata HOM05D003418 ORTHO05D004105 2.8e-06 55.8 110 34.5
Lsat_1_v5_gn_3_30720 Lactuca sativa HOM05D000660 ORTHO05D000766 2.8e-06 55.8 97 41.2
MBI07_g11273_MAGBIO Magnolia biondii HOM05D003418 ORTHO05D004105 2.8e-06 55.8 85 42.4
TWI18G0155 Tripterygium wilfordii HOM05D003418 ORTHO05D004105 2.8e-06 55.8 105 38.1
ClCG07G015190 Citrullus lanatus HOM05D003418 ORTHO05D004105 3.7e-06 55.5 100 44.0
Dinv17578 Davidia involucrata HOM05D003418 ORTHO05D004105 3.7e-06 55.5 110 37.3
Lalb_Chr07g0187041 Lupinus albus HOM05D003418 ORTHO05D004105 3.7e-06 55.5 97 37.1
Potri.001G058100 Populus trichocarpa HOM05D003418 ORTHO05D004105 3.7e-06 55.5 100 38.0
CANSAT01G2188 Cannabis sativa HOM05D003418 ORTHO05D004105 4.8e-06 55.1 106 39.6
CsaV3_4G002780 Cucumis sativus L. HOM05D003418 ORTHO05D004105 4.8e-06 55.1 94 41.5
Actinidia08059 Actinidia chinensis HOM05D003418 ORTHO05D004105 6.3e-06 54.7 108 37.0
CARHR026860 Cardamine hirsuta HOM05D003418 ORTHO05D004105 6.3e-06 54.7 108 36.1
Lalb_Chr12g0206031 Lupinus albus HOM05D003418 ORTHO05D004105 6.3e-06 54.7 97 39.2
Carub.0001s2582 Capsella rubella HOM05D003418 ORTHO05D004105 8.2e-06 54.3 112 36.6
Haze_12439 Corylus avellana HOM05D003418 ORTHO05D004105 8.2e-06 54.3 106 36.8
Oeu004464.1 Olea europaea HOM05D003418 ORTHO05D004105 8.2e-06 54.3 104 40.4
Prupe.1G223700 Prunus persica HOM05D003418 ORTHO05D004105 8.2e-06 54.3 104 36.5


User provided reference genes

Program Settings