Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_34337 Sequoiadendron giganteum HOM05D000147 ORTHO05D005311 6.0e-183 644.0 323 100.0
TAR381G0407 Trochodendron aralioides HOM05D000147 ORTHO05D005311 4.8e-92 342.0 276 60.5
Nn5g28890 Nelumbo nucifera HOM05D000147 ORTHO05D005311 6.3e-92 341.7 276 60.1
Aqoxy6G00466 Aquilegia oxysepala HOM05D000147 ORTHO05D005311 2.4e-91 339.7 266 61.7
GSVIVG01012038001 Vitis vinifera HOM05D000147 ORTHO05D005311 2.0e-90 336.7 268 62.3
Cc11_g00140 Coffea canephora HOM05D000147 ORTHO05D005311 2.7e-90 336.3 275 57.8
QL03p044068 Quercus lobata HOM05D000147 ORTHO05D005311 3.5e-90 335.9 276 59.4
Gorai.008G149300 Gossypium raimondii HOM05D000147 ORTHO05D005311 4.5e-90 335.5 275 58.5
vmacro10897 Vaccinium macrocarpon HOM05D000147 ORTHO05D005311 7.7e-90 334.7 278 56.8
RcHm_v2.0_Chr4g0446611 Rosa chinensis HOM05D000147 ORTHO05D005311 3.8e-89 332.4 276 57.2
Oeu016388.3 Olea europaea HOM05D000147 ORTHO05D005311 6.5e-89 331.6 275 58.5
Duzib132G0553 Durio zibethinus HOM05D000147 ORTHO05D005311 8.6e-89 331.3 276 58.3
Thecc.02G160800 Theobroma cacao HOM05D000147 ORTHO05D005311 1.5e-88 330.5 276 58.7
Actinidia04308 Actinidia chinensis HOM05D000147 ORTHO05D005311 2.5e-88 329.7 276 56.9
FAN12G4124 Fragaria x ananassa HOM05D000147 ORTHO05D005311 1.2e-87 327.4 276 56.9
FAN17G2876 Fragaria x ananassa HOM05D000147 ORTHO05D005311 2.1e-87 326.6 276 56.9
CANSAT64G1147 Cannabis sativa HOM05D000147 ORTHO05D005311 3.6e-87 325.9 306 52.6
ClCG09G004590 Citrullus lanatus HOM05D000147 ORTHO05D005311 8.0e-87 324.7 275 56.0
Duzib248G1409 Durio zibethinus HOM05D000147 ORTHO05D005311 1.4e-86 323.9 276 57.2
CiPaw.05G168400 Carya illinoinensis HOM05D000147 ORTHO05D005311 4.4e-85 318.9 268 57.5
ATR0564G231 Amborella trichopoda HOM05D000147 ORTHO05D005311 5.7e-85 318.5 256 61.7
Ciclev10030948m.g Citrus clementina HOM05D000147 ORTHO05D005311 5.7e-85 318.5 256 59.8
FAN07G2667 Fragaria x ananassa HOM05D000147 ORTHO05D005311 5.7e-85 318.5 276 56.5
Lj6C720G7 Lonicera japonica HOM05D000147 ORTHO05D005311 7.5e-85 318.2 299 53.2
Migut.I00007 Erythranthe guttata HOM05D000147 ORTHO05D005311 9.8e-85 317.8 313 51.1
Eucgr.G02569 Eucalyptus grandis HOM05D000147 ORTHO05D005311 2.8e-84 316.2 276 55.4
TWI77G0661 Tripterygium wilfordii HOM05D000147 ORTHO05D005311 4.9e-84 315.5 268 56.0
Hund08554 Selenicereus undatus HOM05D000147 ORTHO05D005311 1.1e-83 314.3 294 53.4
Cfa008733 Carpinus fangiana HOM05D000147 ORTHO05D005311 4.1e-83 312.4 255 58.0
CsaV3_7G030550 Cucumis sativus L. HOM05D000147 ORTHO05D005311 4.1e-83 312.4 294 51.7
PGR142G0037 Punica granatum HOM05D000147 ORTHO05D005311 4.1e-83 312.4 294 50.0
Sc10g0006770 Simmondsia chinensis HOM05D000147 ORTHO05D005311 2.0e-82 310.1 265 55.1
Gohir.A12G134200 Gossypium hirsutum HOM05D000147 ORTHO05D005311 3.5e-82 309.3 265 56.6
CDE04G2917 Ceratophyllum demersum HOM05D000147 ORTHO05D005311 5.9e-82 308.5 264 56.8
TAR628G0689 Trochodendron aralioides HOM05D000147 ORTHO05D005311 5.9e-82 308.5 255 58.0
arahy.Tifrunner.gnm1.ann1.6GN5UX Arachis hypogaea HOM05D000147 ORTHO05D005311 7.8e-82 308.1 292 53.1
Phvul.011G030700 Phaseolus vulgaris HOM05D000147 ORTHO05D005311 1.7e-81 307.0 284 53.2
AL1G57780 Arabidopsis lyrata HOM05D000147 ORTHO05D005311 2.3e-81 306.6 294 52.4
Aa31LG8G6540 Aethionema arabicum HOM05D000147 ORTHO05D005311 2.9e-81 306.2 286 53.8
Glyma.12G027500 Glycine max HOM05D000147 ORTHO05D005311 2.9e-81 306.2 276 54.0
Gohir.D12G137800 Gossypium hirsutum HOM05D000147 ORTHO05D005311 3.8e-81 305.8 265 55.8
FvH4_4g36860 Fragaria vesca HOM05D000147 ORTHO05D005311 5.0e-81 305.4 255 56.9
TPR.G32339 Trifolium pratense HOM05D000147 ORTHO05D005311 8.6e-81 304.7 277 53.1
Carub.0001s3929 Capsella rubella HOM05D000147 ORTHO05D005311 4.3e-80 302.4 276 54.3
Manes.02G219800 Manihot esculenta HOM05D000147 ORTHO05D005311 5.6e-80 302.0 255 56.1
CiPaw.06G059800 Carya illinoinensis HOM05D000147 ORTHO05D005311 7.3e-80 301.6 255 55.7
THA.LOC104826507 Tarenaya hassleriana HOM05D000147 ORTHO05D005311 7.3e-80 301.6 287 53.7
BolC3t21264H Brassica oleracea HOM05D000147 ORTHO05D005311 1.2e-79 300.8 294 52.0
Lj3g0018243 Lotus japonicus HOM05D000147 ORTHO05D005311 1.2e-79 300.8 276 54.3
Sopen02g003380 Solanum pennellii HOM05D000147 ORTHO05D005311 1.2e-79 300.8 255 55.7
MSTRG.23131 Avicennia marina HOM05D000147 ORTHO05D005311 1.6e-79 300.4 260 55.8
A08p03310 Brassica napus HOM05D000147 ORTHO05D005311 1.6e-79 300.4 294 51.7
BraA08t32364Z Brassica rapa HOM05D000147 ORTHO05D005311 1.6e-79 300.4 294 51.7
CAN.G157.20 Capsicum annuum HOM05D000147 ORTHO05D005311 2.8e-79 299.7 255 56.1
C03p89500 Brassica napus HOM05D000147 ORTHO05D005311 3.6e-79 299.3 294 51.7
ECA246G2622 Erigeron canadensis HOM05D000147 ORTHO05D005311 8.0e-79 298.1 267 54.3
Potri.007G069800 Populus trichocarpa HOM05D000147 ORTHO05D005311 1.8e-78 297.0 254 55.5
Thhalv10011206m.g Eutrema salsugineum HOM05D000147 ORTHO05D005311 3.0e-78 296.2 294 50.3
Solyc02g014350.4 Solanum lycopersicum HOM05D000147 ORTHO05D005311 3.0e-78 296.2 255 54.9
CSS0012305 Camellia sinensis var. sinensis HOM05D000147 ORTHO05D005311 4.0e-78 295.8 254 54.7
Psat7g173240 Pisum sativum HOM05D000147 ORTHO05D005311 4.0e-78 295.8 251 55.8
Sp1g37010 Schrenkiella parvula HOM05D000147 ORTHO05D005311 6.8e-78 295.0 294 51.4
Potri.005G093300 Populus trichocarpa HOM05D000147 ORTHO05D005311 8.9e-78 294.7 254 55.1
CARHR040190 Cardamine hirsuta HOM05D000147 ORTHO05D005311 1.2e-77 294.3 276 52.9
Ca_19029_v3 Cicer arietinum L. HOM05D000147 ORTHO05D005311 2.6e-77 293.1 253 54.9
Sed0001066 Sechium edule HOM05D000147 ORTHO05D005311 2.6e-77 293.1 253 55.3
Sed0010099 Sechium edule HOM05D000147 ORTHO05D005311 5.7e-77 292.0 253 56.5
Aa31LG10G4010 Aethionema arabicum HOM05D000147 ORTHO05D005311 1.3e-76 290.8 294 50.3
Atru.chr11.1175 Acer truncatum HOM05D000147 ORTHO05D005311 1.7e-76 290.4 269 55.4
Prupe.1G346700 Prunus persica HOM05D000147 ORTHO05D005311 3.7e-76 289.3 265 54.3
Lalb_Chr19g0139371 Lupinus albus HOM05D000147 ORTHO05D005311 6.4e-76 288.5 253 53.4
arahy.Tifrunner.gnm1.ann1.7MKI8I Arachis hypogaea HOM05D000147 ORTHO05D005311 8.3e-76 288.1 265 53.6
Medtr4g074920 Medicago truncatula HOM05D000147 ORTHO05D005311 1.1e-75 287.7 243 55.1
MD13G1006500 Malus domestica HOM05D000147 ORTHO05D005311 1.8e-75 287.0 255 54.5
Lsat_1_v5_gn_2_97540 Lactuca sativa HOM05D000147 ORTHO05D005311 2.4e-75 286.6 247 53.8
PSO675G6018 Papaver somniferum HOM05D000147 ORTHO05D005311 3.2e-75 286.2 275 52.4
TWI74G0983 Tripterygium wilfordii HOM05D000147 ORTHO05D005311 5.4e-75 285.4 256 52.7
C01p44370 Brassica napus HOM05D000147 ORTHO05D005311 9.2e-75 284.6 244 54.1
BolC1t04402H Brassica oleracea HOM05D000147 ORTHO05D005311 9.2e-75 284.6 244 54.1
Carub.0003s1961 Capsella rubella HOM05D000147 ORTHO05D005311 9.2e-75 284.6 245 57.6
MELO3C023601.2 Cucumis melo HOM05D000147 ORTHO05D005311 1.6e-74 283.9 269 50.6
Sabra05G0077400 Salix brachista HOM05D000147 ORTHO05D005311 1.6e-74 283.9 254 53.5
Glyma.11G101600 Glycine max HOM05D000147 ORTHO05D005311 2.0e-74 283.5 253 53.4
MD16G1001500 Malus domestica HOM05D000147 ORTHO05D005311 2.0e-74 283.5 259 52.9
Ah.01g001490 Amaranthus hybridus HOM05D000147 ORTHO05D005311 2.7e-74 283.1 255 55.7
EL10Ac9g22954 Beta vulgaris HOM05D000147 ORTHO05D005311 2.7e-74 283.1 251 56.2
PSO541G5327 Papaver somniferum HOM05D000147 ORTHO05D005311 2.7e-74 283.1 275 51.6
VMungo1127G1912 Vigna mungo HOM05D000147 ORTHO05D005311 2.7e-74 283.1 243 56.0
MSTRG.11456 Avicennia marina HOM05D000147 ORTHO05D005311 6.0e-74 282.0 255 52.9
A01p34960 Brassica napus HOM05D000147 ORTHO05D005311 6.0e-74 282.0 245 53.1
Sp3g17770 Schrenkiella parvula HOM05D000147 ORTHO05D005311 1.0e-73 281.2 245 53.9
Lalb_Chr03g0024801 Lupinus albus HOM05D000147 ORTHO05D005311 1.3e-73 280.8 255 52.9
AL3G33200 Arabidopsis lyrata HOM05D000147 ORTHO05D005311 3.0e-73 279.6 245 55.5
CARHR095260 Cardamine hirsuta HOM05D000147 ORTHO05D005311 3.0e-73 279.6 245 56.3
HanXRQChr06g0171471 Helianthus annuus HOM05D000147 ORTHO05D005311 5.0e-73 278.9 247 53.8
BcaC01g01214 Brassica carinata HOM05D000147 ORTHO05D005311 6.6e-73 278.5 288 50.7
BraA01t03579Z Brassica rapa HOM05D000147 ORTHO05D005311 6.6e-73 278.5 244 52.5
COL.COLO4_08994 Corchorus olitorius HOM05D000147 ORTHO05D005311 2.5e-72 276.6 298 49.0
Nitab4.5_0000739g0020 Nicotiana tabacum HOM05D000147 ORTHO05D005311 4.3e-72 275.8 276 51.4
Nitab4.5_0008057g0020 Nicotiana tabacum HOM05D000147 ORTHO05D005311 4.3e-72 275.8 276 51.4
AT1G50140 Arabidopsis thaliana HOM05D000147 ORTHO05D005311 9.5e-72 274.6 253 52.6
Ah.01g012370 Amaranthus hybridus HOM05D000147 ORTHO05D005311 1.2e-71 274.2 276 51.8
AT3G19740 Arabidopsis thaliana HOM05D000147 ORTHO05D005311 2.1e-71 273.5 245 55.1
Thhalv10019988m.g Eutrema salsugineum HOM05D000147 ORTHO05D005311 3.6e-71 272.7 245 53.9
Zm00001eb194420 Zea mays HOM05D000147 ORTHO05D005311 8.0e-71 271.6 303 46.2
HanXRQChr15g0472181 Helianthus annuus HOM05D000147 ORTHO05D005311 2.3e-70 270.0 245 53.1
Peaxi162Scf00363g00615 Petunia axillaris HOM05D000147 ORTHO05D005311 1.3e-68 264.2 229 55.5
AUR62017703 Chenopodium quinoa HOM05D000147 ORTHO05D005311 1.3e-65 254.2 264 50.4
SGA_v2.0_scaffold90G27912 Striga asiatica HOM05D000147 ORTHO05D005311 1.1e-64 251.1 303 46.9
PSO170G3341 Papaver somniferum HOM05D000147 ORTHO05D005311 3.3e-64 249.6 253 50.6
PSO210G5900 Papaver somniferum HOM05D000147 ORTHO05D005311 5.6e-64 248.8 253 49.8
DCAR_002570 Daucus carota HOM05D000147 ORTHO05D005311 7.3e-64 248.4 258 49.2
AUR62032985 Chenopodium quinoa HOM05D000147 ORTHO05D005311 1.4e-51 207.6 255 43.5
SHI31059 Sapria himalayana HOM05D000147 ORTHO05D005311 7.1e-51 205.3 219 48.9
Rhsim09G0074800 Rhododendron simsii HOM05D000147 ORTHO05D005311 9.2e-51 204.9 164 57.3
Sabra07G0057300 Salix brachista HOM05D000147 ORTHO05D005311 6.2e-47 192.2 206 48.1
Lj3g0004493 Lotus japonicus HOM05D000147 ORTHO05D025190 2.0e-45 187.2 259 44.0
Haze_11747 Corylus avellana HOM05D000147 ORTHO05D025190 3.5e-42 176.4 174 48.9
HPP92_013075 Vanilla planifolia HOM05D000147 ORTHO05D005311 3.5e-42 176.4 295 39.3
Migut.D01933 Erythranthe guttata HOM05D000147 ORTHO05D005311 1.3e-41 174.5 242 40.5
Lj3g0009641 Lotus japonicus HOM05D000147 ORTHO05D005311 6.6e-41 172.2 247 41.7
Lj3g0002274 Lotus japonicus HOM05D000147 ORTHO05D025190 1.9e-35 154.1 224 43.8
LjContig00460g0026987 Lotus japonicus HOM05D000147 ORTHO05D025190 2.4e-35 153.7 214 44.4
Migut.D01932 Erythranthe guttata HOM05D000147 ORTHO05D005311 8.7e-33 145.2 223 38.1
unitig_26.g9622 Utricularia gibba HOM05D000147 ORTHO05D005311 4.0e-30 136.3 179 41.3
SalBow2G1925 Salvia bowleyana HOM05D000147 ORTHO05D005311 3.4e-29 133.3 257 36.2
SGA_v2.0_scaffold7G04135 Striga asiatica HOM05D000147 ORTHO05D406079 9.9e-29 131.7 248 34.7
LjContig00430g0004045 Lotus japonicus HOM05D000147 ORTHO05D025190 3.2e-27 126.7 157 44.6
Pp3c5_8900 Physcomitrium patens HOM05D000147 ORTHO05D005311 4.2e-27 126.3 275 31.6
Rhsim09G0074700 Rhododendron simsii HOM05D000147 ORTHO05D048307 9.3e-27 125.2 95 62.1
Lsat_1_v5_gn_5_32401 Lactuca sativa HOM05D000147 ORTHO05D005311 4.6e-26 122.9 175 39.4
vmacro14249 Vaccinium macrocarpon HOM05D000147 ORTHO05D426508 2.8e-23 113.6 194 37.1
Mapoly0092s0039 Marchantia polymorpha HOM05D000147 ORTHO05D005311 3.7e-23 113.2 252 32.5
Pp3c18_15920 Physcomitrium patens HOM05D000147 ORTHO05D005311 1.9e-19 100.9 180 32.8
Lsat_1_v5_gn_3_18480 Lactuca sativa HOM05D000147 ORTHO05D005311 9.3e-19 98.6 154 35.1
SMO358G0619 Selaginella moellendorffii HOM05D000147 ORTHO05D005311 2.3e-17 94.0 158 32.3
HanXRQChr04g0096721 Helianthus annuus HOM05D001137 ORTHO05D048307 3.7e-15 86.7 77 53.2
Lsat_1_v5_gn_8_102480 Lactuca sativa HOM05D001455 ORTHO05D005311 4.8e-15 86.3 99 42.4
Haze_11745 Corylus avellana HOM05D000147 ORTHO05D005311 1.5e-13 81.3 52 71.2
SMO198G0041 Selaginella moellendorffii HOM05D000147 ORTHO05D377854 2.1e-10 70.9 243 27.2
SMO203G0080 Selaginella moellendorffii HOM05D000147 ORTHO05D005311 1.1e-08 65.1 137 27.7
Mapoly0024s0066 Marchantia polymorpha HOM05D000147 ORTHO05D001254 6.3e-07 59.3 265 25.3
CiPaw.11G008700 Carya illinoinensis HOM05D000147 ORTHO05D001254 8.2e-07 58.9 250 23.6
Ah.08g213180 Amaranthus hybridus HOM05D000147 ORTHO05D001254 4.1e-06 56.6 325 21.2
Oeu023481.1 Olea europaea HOM05D000147 ORTHO05D001254 9.1e-06 55.5 93 35.5


User provided reference genes

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