Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_34318 Sequoiadendron giganteum HOM05D005002 ORTHO05D006016 1.9e-62 242.3 120 100.0
COL.COLO4_19003 Corchorus olitorius HOM05D005002 ORTHO05D006016 1.6e-08 63.2 67 52.2
arahy.Tifrunner.gnm1.ann1.JDP7FN Arachis hypogaea HOM05D005002 ORTHO05D006016 2.8e-08 62.4 47 66.0
QL02p017669 Quercus lobata HOM05D005002 ORTHO05D006016 3.6e-08 62.0 43 74.4
TWI63G0754 Tripterygium wilfordii HOM05D005002 ORTHO05D006016 8.0e-08 60.8 42 71.4
Glyma.11G160400 Glycine max HOM05D005002 ORTHO05D006016 1.4e-07 60.1 41 70.7
Glyma.18G054400 Glycine max HOM05D005002 ORTHO05D006016 1.4e-07 60.1 41 70.7
Lj1g0025268 Lotus japonicus HOM05D005002 ORTHO05D006016 1.4e-07 60.1 41 70.7
Phvul.008G002400 Phaseolus vulgaris HOM05D005002 ORTHO05D006016 1.4e-07 60.1 41 70.7
PGR044G1228 Punica granatum HOM05D005002 ORTHO05D006016 1.4e-07 60.1 41 73.2
Thecc.09G010700 Theobroma cacao HOM05D005002 ORTHO05D006016 1.4e-07 60.1 41 73.2
VMungo1383G3578 Vigna mungo HOM05D005002 ORTHO05D006016 1.4e-07 60.1 41 70.7
arahy.Tifrunner.gnm1.ann1.1V29TX Arachis hypogaea HOM05D005002 ORTHO05D006016 1.8e-07 59.7 43 67.4
MSTRG.25811 Avicennia marina HOM05D005002 ORTHO05D006016 1.8e-07 59.7 41 70.7
CSS0010222 Camellia sinensis var. sinensis HOM05D005002 ORTHO05D006016 1.8e-07 59.7 41 73.2
CSS0022428 Camellia sinensis var. sinensis HOM05D005002 ORTHO05D006016 1.8e-07 59.7 41 73.2
CSS0031521 Camellia sinensis var. sinensis HOM05D005002 ORTHO05D006016 1.8e-07 59.7 41 73.2
CSS0035568 Camellia sinensis var. sinensis HOM05D005002 ORTHO05D006016 1.8e-07 59.7 41 73.2
Duzib168G1293 Durio zibethinus HOM05D005002 ORTHO05D006016 1.8e-07 59.7 65 52.3
Oeu008768.2 Olea europaea HOM05D005002 ORTHO05D006016 1.8e-07 59.7 41 70.7
QL12p013723 Quercus lobata HOM05D005002 ORTHO05D006016 1.8e-07 59.7 40 75.0
TPR.G15628 Trifolium pratense HOM05D005002 ORTHO05D006016 1.8e-07 59.7 41 68.3
ATR0691G047 Amborella trichopoda HOM05D005002 ORTHO05D006016 2.3e-07 59.3 41 73.2
AUR62020301 Chenopodium quinoa HOM05D005002 ORTHO05D006016 2.3e-07 59.3 41 70.7
AUR62037698 Chenopodium quinoa HOM05D005002 ORTHO05D006016 2.3e-07 59.3 41 70.7
QL01p029339 Quercus lobata HOM05D005002 ORTHO05D006016 2.3e-07 59.3 41 70.7
RcHm_v2.0_Chr6g0269591 Rosa chinensis HOM05D005002 ORTHO05D006016 2.3e-07 59.3 41 70.7
VMungo1383G2539 Vigna mungo HOM05D005002 ORTHO05D006016 2.3e-07 59.3 41 70.7
GSVIVG01023467001 Vitis vinifera HOM05D005002 ORTHO05D006016 2.3e-07 59.3 41 70.7
Actinidia03570 Actinidia chinensis HOM05D005002 ORTHO05D006016 3.0e-07 58.9 41 70.7
ClCG08G013890 Citrullus lanatus HOM05D005002 ORTHO05D006016 3.0e-07 58.9 41 70.7
MELO3C011321.2 Cucumis melo HOM05D005002 ORTHO05D006016 3.0e-07 58.9 41 70.7
Dinv03977 Davidia involucrata HOM05D005002 ORTHO05D006016 3.0e-07 58.9 41 70.7
Duzib168G1591 Durio zibethinus HOM05D005002 ORTHO05D006016 3.0e-07 58.9 63 52.4
Medtr7g080740 Medicago truncatula HOM05D005002 ORTHO05D006016 3.0e-07 58.9 41 68.3
Psat0s2083g0280 Pisum sativum HOM05D005002 ORTHO05D006016 3.0e-07 58.9 41 68.3
Dinv03972 Davidia involucrata HOM05D005002 ORTHO05D006016 4.0e-07 58.5 41 70.7
Migut.A00405 Erythranthe guttata HOM05D005002 ORTHO05D006016 4.0e-07 58.5 41 68.3
Hma1.2p1_0192F.1_g083460 Hydrangea macrophylla HOM05D005002 ORTHO05D006016 4.0e-07 58.5 41 70.7
Lalb_Chr10g0091021 Lupinus albus HOM05D005002 ORTHO05D006016 4.0e-07 58.5 43 67.4
Ciclev10009813m.g Citrus clementina HOM05D005002 ORTHO05D006016 5.2e-07 58.2 39 71.8
Eucgr.B03202 Eucalyptus grandis HOM05D005002 ORTHO05D006016 5.2e-07 58.2 41 70.7
Gohir.A07G034400 Gossypium hirsutum HOM05D005002 ORTHO05D006016 5.2e-07 58.2 65 50.8
Gohir.D07G038000 Gossypium hirsutum HOM05D005002 ORTHO05D006016 5.2e-07 58.2 65 50.8
Gorai.001G039800 Gossypium raimondii HOM05D005002 ORTHO05D006016 5.2e-07 58.2 65 50.8
Lalb_Chr08g0234011 Lupinus albus HOM05D005002 ORTHO05D006016 5.2e-07 58.2 41 68.3
MD08G1049200 Malus domestica HOM05D005002 ORTHO05D006016 5.2e-07 58.2 41 68.3
Prupe.1G399400 Prunus persica HOM05D005002 ORTHO05D006016 5.2e-07 58.2 41 68.3
RcHm_v2.0_Chr2g0161711 Rosa chinensis HOM05D005002 ORTHO05D006016 5.2e-07 58.2 39 71.8
Solyc12g096470.2 Solanum lycopersicum HOM05D005002 ORTHO05D006016 5.2e-07 58.2 56 57.1
Sopen12g032300 Solanum pennellii HOM05D005002 ORTHO05D006016 5.2e-07 58.2 56 57.1
PGSC0003DMG400029278 Solanum tuberosum HOM05D005002 ORTHO05D006016 5.2e-07 58.2 56 57.1
TAR622G0454 Trochodendron aralioides HOM05D005002 ORTHO05D006016 5.2e-07 58.2 41 70.7
Cfa017847 Carpinus fangiana HOM05D005002 ORTHO05D006016 6.8e-07 57.8 55 58.2
FvH4_2g11240 Fragaria vesca HOM05D005002 ORTHO05D006016 6.8e-07 57.8 41 68.3
FAN15G1411 Fragaria x ananassa HOM05D000348 ORTHO05D000244 6.8e-07 57.8 41 68.3
FAN24G1669 Fragaria x ananassa HOM05D005002 ORTHO05D006016 6.8e-07 57.8 41 68.3
unitig_93.g30701 Utricularia gibba HOM05D005002 ORTHO05D006016 6.8e-07 57.8 42 64.3
vmacro05092 Vaccinium macrocarpon HOM05D005002 ORTHO05D006016 6.8e-07 57.8 41 68.3
GSVIVG01023464001 Vitis vinifera HOM05D005002 ORTHO05D006016 6.8e-07 57.8 41 68.3
Actinidia14152 Actinidia chinensis HOM05D005002 ORTHO05D006016 8.9e-07 57.4 41 68.3
Gohir.A05G062833 Gossypium hirsutum HOM05D005002 ORTHO05D006016 8.9e-07 57.4 41 68.3
Gohir.A05G062900 Gossypium hirsutum HOM05D005002 ORTHO05D006016 8.9e-07 57.4 41 68.3
Gohir.D05G065400 Gossypium hirsutum HOM05D005002 ORTHO05D006016 8.9e-07 57.4 41 68.3
Gorai.009G066200 Gossypium raimondii HOM05D005002 ORTHO05D006016 8.9e-07 57.4 41 68.3
RcHm_v2.0_Chr2g0161651 Rosa chinensis HOM05D005002 ORTHO05D006016 8.9e-07 57.4 41 68.3
CANSAT25G2804 Cannabis sativa HOM05D005002 ORTHO05D006016 1.2e-06 57.0 67 46.3
Haze_18362 Corylus avellana HOM05D005002 ORTHO05D006016 1.2e-06 57.0 41 68.3
Peaxi162Scf00459g00833 Petunia axillaris HOM05D005002 ORTHO05D006016 1.2e-06 57.0 41 68.3
TPR.G12644 Trifolium pratense HOM05D005002 ORTHO05D006016 1.2e-06 57.0 41 63.4
TWI34G0825 Tripterygium wilfordii HOM05D005002 ORTHO05D006016 1.2e-06 57.0 41 70.7
unitig_92.g28144 Utricularia gibba HOM05D003482 ORTHO05D004194 1.2e-06 57.0 41 65.9
CAN.G566.59 Capsicum annuum HOM05D005002 ORTHO05D006016 1.5e-06 56.6 65 49.2
Nitab4.5_0001110g0170 Nicotiana tabacum HOM05D005002 ORTHO05D006016 1.5e-06 56.6 65 49.2
MSTRG.9875 Avicennia marina HOM05D005002 ORTHO05D006016 2.0e-06 56.2 39 69.2
Ca_06528_v3 Cicer arietinum L. HOM05D005002 ORTHO05D006016 2.0e-06 56.2 41 68.3
Cc00_g22050 Coffea canephora HOM05D005002 ORTHO05D006016 2.0e-06 56.2 41 65.9
COL.COLO4_21113 Corchorus olitorius HOM05D005002 ORTHO05D006016 2.0e-06 56.2 63 52.4
Manes.03G005700 Manihot esculenta HOM05D005002 ORTHO05D006016 2.0e-06 56.2 41 65.9
DCAR_020711 Daucus carota HOM05D004285 ORTHO05D006016 2.6e-06 55.8 41 68.3
DCAR_020712 Daucus carota HOM05D005002 ORTHO05D006016 2.6e-06 55.8 41 68.3
Nn3g17630 Nelumbo nucifera HOM05D005002 ORTHO05D006016 2.6e-06 55.8 41 65.9
Potri.018G013300 Populus trichocarpa HOM05D005002 ORTHO05D006016 3.4e-06 55.5 41 65.9
Sabra18G0017200 Salix brachista HOM05D005002 ORTHO05D006016 3.4e-06 55.5 41 65.9
Sed0003546 Sechium edule HOM05D005002 ORTHO05D006016 3.4e-06 55.5 41 65.9
Sed0020410 Sechium edule HOM05D005002 ORTHO05D006016 3.4e-06 55.5 41 65.9
CDE02G2218 Ceratophyllum demersum HOM05D002187 ORTHO05D002243 4.4e-06 55.1 41 65.9
CDE04G1191 Ceratophyllum demersum HOM05D005002 ORTHO05D006016 4.4e-06 55.1 41 65.9
Sc23g0006270 Simmondsia chinensis HOM05D005002 ORTHO05D006016 4.4e-06 55.1 41 63.4
Ah.09g224730 Amaranthus hybridus HOM05D005002 ORTHO05D006016 7.5e-06 54.3 39 66.7
EL10Ac2g02432 Beta vulgaris HOM05D005002 ORTHO05D006016 7.5e-06 54.3 41 65.9
Aqoxy7G00066 Aquilegia oxysepala HOM05D005002 ORTHO05D006016 9.8e-06 53.9 41 65.9
HanXRQChr14g0453401 Helianthus annuus HOM05D005002 ORTHO05D006016 9.8e-06 53.9 41 58.5


User provided reference genes

Program Settings