Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_34049 Sequoiadendron giganteum HOM05D004297 ORTHO05D005213 1.3e-122 443.0 214 100.0
TPR.G37786 Trifolium pratense HOM05D004297 ORTHO05D005213 7.0e-31 138.3 88 78.4
Medtr7g078170 Medicago truncatula HOM05D004297 ORTHO05D005213 1.6e-30 137.1 88 77.3
Psat3g107280 Pisum sativum HOM05D004297 ORTHO05D005213 1.6e-30 137.1 88 77.3
COL.COLO4_12744 Corchorus olitorius HOM05D004297 ORTHO05D005213 3.5e-30 136.0 85 81.2
Gohir.A07G141200 Gossypium hirsutum HOM05D004297 ORTHO05D005213 4.6e-30 135.6 85 80.0
Gohir.D07G146700 Gossypium hirsutum HOM05D004297 ORTHO05D005213 4.6e-30 135.6 85 80.0
Gorai.001G159200 Gossypium raimondii HOM05D004297 ORTHO05D005213 4.6e-30 135.6 85 80.0
Dinv43843 Davidia involucrata HOM05D004297 ORTHO05D005213 6.0e-30 135.2 85 81.2
PSO063G5582 Papaver somniferum HOM05D004297 ORTHO05D005213 6.0e-30 135.2 85 81.2
Thecc.01G355600 Theobroma cacao HOM05D004297 ORTHO05D005213 6.0e-30 135.2 85 81.2
Glyma.09G256700 Glycine max HOM05D004297 ORTHO05D005213 1.3e-29 134.0 87 75.9
Potri.002G162000 Populus trichocarpa HOM05D004297 ORTHO05D005213 1.3e-29 134.0 85 78.8
Atru.chr5.535 Acer truncatum HOM05D004297 ORTHO05D005213 1.7e-29 133.7 85 78.8
Haze_15540 Corylus avellana HOM05D004297 ORTHO05D005213 1.7e-29 133.7 84 81.0
Duzib133G0964 Durio zibethinus HOM05D004297 ORTHO05D005213 1.7e-29 133.7 85 77.6
Duzib138G1153 Durio zibethinus HOM05D004297 ORTHO05D005213 1.7e-29 133.7 84 81.0
Actinidia20884 Actinidia chinensis HOM05D004297 ORTHO05D005213 3.0e-29 132.9 82 81.7
Cfa003893 Carpinus fangiana HOM05D004297 ORTHO05D005213 3.9e-29 132.5 85 80.0
Sc23g0002720 Simmondsia chinensis HOM05D004297 ORTHO05D005213 3.9e-29 132.5 85 77.6
Lalb_Chr03g0038271 Lupinus albus HOM05D004297 ORTHO05D005213 5.0e-29 132.1 87 75.9
CSS0008006 Camellia sinensis var. sinensis HOM05D004297 ORTHO05D005213 6.6e-29 131.7 85 77.6
Lj1g0026001 Lotus japonicus HOM05D004297 ORTHO05D005213 6.6e-29 131.7 88 71.6
QL04p054287 Quercus lobata HOM05D004297 ORTHO05D005213 6.6e-29 131.7 85 80.0
CiPaw.02G033500 Carya illinoinensis HOM05D004297 ORTHO05D005213 8.6e-29 131.3 85 78.8
Glyma.18G235800 Glycine max HOM05D004297 ORTHO05D005213 8.6e-29 131.3 87 74.7
Potri.014G087900 Populus trichocarpa HOM05D004297 ORTHO05D005213 8.6e-29 131.3 85 78.8
Aqoxy5G04078 Aquilegia oxysepala HOM05D004297 ORTHO05D005213 1.1e-28 131.0 82 80.5
arahy.Tifrunner.gnm1.ann1.0F1BT2 Arachis hypogaea HOM05D004297 ORTHO05D005213 1.1e-28 131.0 87 72.4
arahy.Tifrunner.gnm1.ann1.553FBT Arachis hypogaea HOM05D004297 ORTHO05D005213 1.1e-28 131.0 87 72.4
FvH4_5g28900 Fragaria vesca HOM05D004297 ORTHO05D005213 1.1e-28 131.0 83 77.1
FAN13G2415 Fragaria x ananassa HOM05D004297 ORTHO05D005213 1.1e-28 131.0 83 77.1
FAN18G0188 Fragaria x ananassa HOM05D004297 ORTHO05D005213 1.1e-28 131.0 83 77.1
TAR629G2795 Trochodendron aralioides HOM05D004297 ORTHO05D005213 1.1e-28 131.0 84 79.8
Actinidia10047 Actinidia chinensis HOM05D004297 ORTHO05D005213 1.5e-28 130.6 82 80.5
PGR042G3632 Punica granatum HOM05D004297 ORTHO05D005213 1.5e-28 130.6 85 75.3
vmacro13256 Vaccinium macrocarpon HOM05D004297 ORTHO05D005213 1.5e-28 130.6 82 80.5
CANSAT56G3337 Cannabis sativa HOM05D004297 ORTHO05D005213 1.9e-28 130.2 86 76.7
Sopen01g038660 Solanum pennellii HOM05D004297 ORTHO05D005213 1.9e-28 130.2 85 74.1
CAN.G78.102 Capsicum annuum HOM05D004297 ORTHO05D005213 2.5e-28 129.8 85 72.9
Ciclev10018597m.g Citrus clementina HOM05D004297 ORTHO05D005213 2.5e-28 129.8 88 73.9
Zm00001eb257250 Zea mays HOM05D004297 ORTHO05D005213 2.5e-28 129.8 85 78.8
CiPaw.01G064500 Carya illinoinensis HOM05D004297 ORTHO05D005213 3.3e-28 129.4 88 75.0
Nitab4.5_0006942g0020 Nicotiana tabacum HOM05D004297 ORTHO05D005213 3.3e-28 129.4 90 70.0
Os02g0786000 Oryza sativa ssp. japonica HOM05D004297 ORTHO05D005213 3.3e-28 129.4 85 77.6
Prupe.2G174200 Prunus persica HOM05D004297 ORTHO05D005213 3.3e-28 129.4 86 76.7
Sabra14G0063700 Salix brachista HOM05D004297 ORTHO05D005213 3.3e-28 129.4 85 76.5
Manes.01G254400 Manihot esculenta HOM05D004297 ORTHO05D005213 4.3e-28 129.0 85 76.5
Nitab4.5_0000583g0330 Nicotiana tabacum HOM05D004297 ORTHO05D005213 4.3e-28 129.0 85 72.9
Solyc01g094880.3 Solanum lycopersicum HOM05D004297 ORTHO05D005213 4.3e-28 129.0 85 72.9
Rhsim07G0012700 Rhododendron simsii HOM05D004297 ORTHO05D005213 5.6e-28 128.6 82 79.3
RcHm_v2.0_Chr7g0221211 Rosa chinensis HOM05D004297 ORTHO05D005213 7.3e-28 128.3 83 75.9
Sabra02G0129100 Salix brachista HOM05D004297 ORTHO05D005213 7.3e-28 128.3 83 75.9
Cc02_g38370 Coffea canephora HOM05D004297 ORTHO05D005213 9.5e-28 127.9 82 78.0
Nn6g33322 Nelumbo nucifera HOM05D004297 ORTHO05D005213 9.5e-28 127.9 85 74.1
VMungo1383G1290 Vigna mungo HOM05D004297 ORTHO05D005213 9.5e-28 127.9 87 72.4
Lsat_1_v5_gn_7_3220 Lactuca sativa HOM05D004297 ORTHO05D005213 1.2e-27 127.5 87 75.9
Lj9C586G6 Lonicera japonica HOM05D004297 ORTHO05D005213 1.2e-27 127.5 85 75.3
Eucgr.E00109 Eucalyptus grandis HOM05D004297 ORTHO05D005213 1.6e-27 127.1 85 74.1
Hund27256 Selenicereus undatus HOM05D004297 ORTHO05D005213 1.6e-27 127.1 83 77.1
DCAR_006941 Daucus carota HOM05D004297 ORTHO05D005213 2.1e-27 126.7 82 75.6
CDE04G3641 Ceratophyllum demersum HOM05D004297 ORTHO05D005213 2.8e-27 126.3 86 73.3
Migut.B01779 Erythranthe guttata HOM05D004297 ORTHO05D005213 2.8e-27 126.3 87 70.1
Zm00001eb192800 Zea mays HOM05D004297 ORTHO05D005213 2.8e-27 126.3 85 76.5
ECA236G0245 Erigeron canadensis HOM05D004297 ORTHO05D005213 4.7e-27 125.6 89 71.9
Oeu036598.1 Olea europaea HOM05D004297 ORTHO05D005213 4.7e-27 125.6 85 75.3
Phvul.008G060200 Phaseolus vulgaris HOM05D004297 ORTHO05D005213 4.7e-27 125.6 87 71.3
HanXRQChr04g0121341 Helianthus annuus HOM05D004297 ORTHO05D005213 6.2e-27 125.2 89 71.9
GSVIVG01026995001 Vitis vinifera HOM05D004297 ORTHO05D005213 6.2e-27 125.2 85 75.3
arahy.Tifrunner.gnm1.ann1.K3XHZI Arachis hypogaea HOM05D004297 ORTHO05D005213 1.4e-26 124.0 84 71.4
THA.LOC104817308 Tarenaya hassleriana HOM05D004297 ORTHO05D005213 2.3e-26 123.2 88 68.2
TWI59G0377 Tripterygium wilfordii HOM05D004297 ORTHO05D005213 2.3e-26 123.2 87 72.4
MD11G1239400 Malus domestica HOM05D004297 ORTHO05D005213 4.0e-26 122.5 79 77.2
HPP92_012670 Vanilla planifolia HOM05D004297 ORTHO05D005213 4.0e-26 122.5 86 70.9
Aa31LG1G27480 Aethionema arabicum HOM05D004297 ORTHO05D005213 5.2e-26 122.1 86 69.8
unitig_749.g14347 Utricularia gibba HOM05D004297 ORTHO05D005213 1.2e-25 120.9 83 72.3
BcaC07g40648 Brassica carinata HOM05D004297 ORTHO05D005213 2.6e-25 119.8 86 69.8
A09p53530 Brassica napus HOM05D004297 ORTHO05D005213 2.6e-25 119.8 86 69.8
C08p36360 Brassica napus HOM05D004297 ORTHO05D005213 2.6e-25 119.8 86 69.8
BolC8t51219H Brassica oleracea HOM05D004297 ORTHO05D005213 2.6e-25 119.8 86 69.8
MSTRG.17286 Avicennia marina HOM05D004297 ORTHO05D005213 3.4e-25 119.4 83 73.5
BraA09t40777Z Brassica rapa HOM05D004297 ORTHO05D005213 5.8e-25 118.6 86 68.6
AUR62022597 Chenopodium quinoa HOM05D004297 ORTHO05D005213 5.8e-25 118.6 105 62.9
Thhalv10005756m.g Eutrema salsugineum HOM05D004297 ORTHO05D005213 5.8e-25 118.6 86 69.8
SGA_v2.0_scaffold78G25411 Striga asiatica HOM05D004297 ORTHO05D005213 7.5e-25 118.2 81 71.6
SMO367G0176 Selaginella moellendorffii HOM05D004297 ORTHO05D005213 9.8e-25 117.9 83 67.5
AL5G43840 Arabidopsis lyrata HOM05D004297 ORTHO05D005213 2.2e-24 116.7 86 68.6
Carub.0005s2817 Capsella rubella HOM05D004297 ORTHO05D005213 2.9e-24 116.3 86 68.6
Dinv32504 Davidia involucrata HOM05D004297 ORTHO05D005213 2.9e-24 116.3 107 61.7
SalBow3G3037 Salvia bowleyana HOM05D004297 ORTHO05D005213 3.7e-24 115.9 82 70.7
AUR62004391 Chenopodium quinoa HOM05D004297 ORTHO05D005213 6.4e-24 115.2 104 62.5
CARHR171820 Cardamine hirsuta HOM05D004297 ORTHO05D005213 8.3e-24 114.8 86 67.4
Sed0013986 Sechium edule HOM05D004297 ORTHO05D005213 1.1e-23 114.4 85 70.6
AT3G61480 Arabidopsis thaliana HOM05D004297 ORTHO05D005213 1.4e-23 114.0 86 67.4
AT5G28350 Arabidopsis thaliana HOM05D004297 ORTHO05D005213 2.4e-23 113.2 86 67.4
ClCG06G003500 Citrullus lanatus HOM05D004297 ORTHO05D005213 2.4e-23 113.2 82 72.0
CsaV3_6G000810 Cucumis sativus L. HOM05D004297 ORTHO05D005213 2.4e-23 113.2 82 72.0
MELO3C021189.2 Cucumis melo HOM05D004297 ORTHO05D005213 4.1e-23 112.5 82 72.0
Mapoly0027s0035 Marchantia polymorpha HOM05D004297 ORTHO05D005213 2.3e-21 106.7 81 63.0
Peaxi162Scf41243g00005 Petunia axillaris HOM05D004297 ORTHO05D005213 6.6e-21 105.1 61 83.6
Cpa.g.sc11.37 Carica papaya HOM05D004297 ORTHO05D005213 8.6e-21 104.8 61 83.6
Ca_00827_v3 Cicer arietinum L. HOM05D000005 ORTHO05D005213 1.5e-20 104.0 63 79.4
Pp3c2_4880 Physcomitrium patens HOM05D004297 ORTHO05D005213 4.3e-20 102.4 82 64.6
AagrBONN_evm.TU.Sc2ySwM_344.3195 Anthoceros agrestis HOM05D004297 ORTHO05D005213 6.8e-18 95.1 78 56.4
CBR_g36279 Chara braunii HOM05D004297 ORTHO05D005213 2.0e-17 93.6 86 53.5
AL5G43780 Arabidopsis lyrata HOM05D004297 ORTHO05D005213 3.4e-17 92.8 60 75.0
ATR0661G292 Amborella trichopoda HOM05D004297 ORTHO05D005213 1.1e-15 87.8 83 63.9
EL10Ac1g00379 Beta vulgaris HOM05D004297 ORTHO05D005213 2.4e-15 86.7 83 61.4
Pp3c14_21590 Physcomitrium patens HOM05D004297 ORTHO05D005213 2.3e-13 80.1 83 51.8
TAR636G0349 Trochodendron aralioides HOM05D004297 ORTHO05D005213 1.8e-10 70.5 41 85.4
Peaxi162Scf00020g01027 Petunia axillaris HOM05D004297 ORTHO05D005213 5.2e-10 68.9 40 82.5
MD01G1068000 Malus domestica HOM05D004297 ORTHO05D005213 1.7e-08 63.9 40 77.5
arahy.Tifrunner.gnm1.ann1.ABA0S6 Arachis hypogaea HOM05D004297 ORTHO05D005213 8.4e-08 61.6 46 63.0
arahy.Tifrunner.gnm1.ann1.19V8U8 Arachis hypogaea HOM05D000005 ORTHO05D000012 2.1e-06 57.0 47 59.6
SHI13402 Sapria himalayana HOM05D004297 ORTHO05D005213 2.7e-06 56.6 66 47.0


User provided reference genes

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